Wall clock time and date at job start Tue Mar 31 2020 11:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30836 * 125.89646 * 2 1 4 4 N 1.40087 * 108.20407 * 180.25846 * 3 2 1 5 5 H 0.97002 * 126.03617 * 179.70180 * 4 3 2 6 6 C 1.34944 * 107.92189 * 359.71754 * 4 3 2 7 7 C 1.35308 * 107.74827 * 0.02562 * 6 4 3 8 8 C 1.50706 * 126.03993 * 180.02562 * 7 6 4 9 9 N 1.46900 * 109.46958 * 260.01978 * 8 7 6 10 10 C 1.46896 * 111.00195 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47382 * 179.97438 * 10 9 8 12 12 C 1.38280 * 119.97205 * 270.02476 * 11 10 9 13 13 C 1.38255 * 120.11174 * 179.97438 * 12 11 10 14 14 C 1.38163 * 120.05063 * 359.76900 * 13 12 11 15 15 C 1.38710 * 119.94702 * 0.48231 * 14 13 12 16 16 O 1.35900 * 120.05544 * 179.76528 * 15 14 13 17 17 C 1.42898 * 117.00172 * 359.72769 * 16 15 14 18 18 C 1.52997 * 109.47319 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00362 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99850 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47052 * 89.99717 * 23 21 19 25 25 H 1.48495 * 109.47307 * 209.99656 * 23 21 19 26 26 H 1.48500 * 109.47143 * 330.00164 * 23 21 19 27 27 C 1.38129 * 119.97079 * 90.00085 * 11 10 9 28 28 H 1.08999 * 109.47202 * 270.21012 * 1 2 3 29 29 H 1.09001 * 109.47351 * 30.21063 * 1 2 3 30 30 H 1.09000 * 109.47037 * 150.20842 * 1 2 3 31 31 H 1.08005 * 126.12248 * 179.97438 * 6 4 3 32 32 H 1.08996 * 109.47105 * 140.01685 * 8 7 6 33 33 H 1.09006 * 109.46860 * 20.01880 * 8 7 6 34 34 H 1.00903 * 110.99490 * 56.04413 * 9 8 7 35 35 H 1.09005 * 109.46944 * 59.99947 * 10 9 8 36 36 H 1.09002 * 109.47398 * 300.00389 * 10 9 8 37 37 H 1.08000 * 119.95034 * 0.02562 * 12 11 10 38 38 H 1.07991 * 119.97457 * 180.02562 * 13 12 11 39 39 H 1.08006 * 120.02763 * 180.24929 * 14 13 12 40 40 H 1.09002 * 109.47259 * 300.00149 * 17 16 15 41 41 H 1.09001 * 109.47074 * 60.00171 * 17 16 15 42 42 H 1.09002 * 109.47153 * 300.00307 * 18 17 16 43 43 H 1.08998 * 109.47533 * 59.99936 * 18 17 16 44 44 H 0.96994 * 119.99814 * 180.02562 * 22 21 19 45 45 H 1.07998 * 120.02418 * 0.02613 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0060 5 1 4.3908 1.2080 -0.0114 6 6 3.6141 -0.7153 -0.0033 7 6 2.3271 -1.1329 0.0036 8 6 1.8599 -2.5657 0.0093 9 7 1.4737 -2.9602 -1.3520 10 6 1.0124 -4.3544 -1.3852 11 6 0.6252 -4.7220 -2.7944 12 6 -0.6729 -4.5243 -3.2281 13 6 -1.0312 -4.8600 -4.5205 14 6 -0.0913 -5.3897 -5.3836 15 6 1.2102 -5.5938 -4.9494 16 8 2.1353 -6.1191 -5.7950 17 6 1.6968 -6.4437 -7.1158 18 6 2.8681 -7.0178 -7.9154 19 6 2.4059 -7.3595 -9.3084 20 1 1.3794 -7.1844 -9.5949 21 6 3.2936 -7.8948 -10.2175 22 7 2.8903 -8.1926 -11.4334 23 14 5.0695 -8.1958 -9.7227 24 1 5.2021 -9.5647 -9.1624 25 1 5.9450 -8.0619 -10.9146 26 1 5.4732 -7.2003 -8.6974 27 6 1.5673 -5.2557 -3.6520 28 1 -0.3633 0.0038 1.0276 29 1 -0.3634 0.8881 -0.5171 30 1 -0.3633 -0.8919 -0.5106 31 1 4.4891 -1.3485 -0.0069 32 1 1.0017 -2.6654 0.6738 33 1 2.6669 -3.2096 0.3591 34 1 2.2338 -2.8155 -1.9997 35 1 0.1483 -4.4669 -0.7303 36 1 1.8137 -5.0105 -1.0453 37 1 -1.4080 -4.1061 -2.5564 38 1 -2.0455 -4.7043 -4.8570 39 1 -0.3706 -5.6481 -6.3944 40 1 0.8967 -7.1820 -7.0618 41 1 1.3281 -5.5436 -7.6077 42 1 3.6679 -6.2792 -7.9693 43 1 3.2374 -7.9178 -7.4237 44 1 3.5147 -8.5695 -12.0728 45 1 2.5810 -5.4099 -3.3128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171384239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:12 Heat of formation + Delta-G solvation = 48.970571 kcal Electronic energy + Delta-G solvation = -24373.473958 eV Core-core repulsion = 20778.281991 eV Total energy + Delta-G solvation = -3595.191967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.53386 -39.86404 -37.72527 -36.04425 -33.37892 -33.19828 -32.01302 -31.10440 -30.07767 -29.31435 -28.13421 -26.30440 -25.14803 -23.83611 -22.29673 -21.44563 -21.24012 -20.16657 -19.75009 -18.28902 -17.61862 -16.67530 -15.99201 -15.68579 -15.54944 -15.38954 -15.19584 -14.75382 -14.56558 -14.36741 -14.17343 -13.70003 -13.25336 -13.10496 -13.01573 -12.84915 -12.78174 -12.44460 -12.36031 -12.20125 -11.98862 -11.58057 -11.43440 -11.36968 -10.84548 -10.82359 -10.62950 -10.19334 -9.99925 -9.82897 -9.64604 -9.35825 -9.03207 -8.71635 -8.63785 -8.54362 -7.88531 -6.14852 -4.15765 1.39529 1.57853 1.67091 2.39990 2.57552 3.26934 3.34230 3.39456 3.72247 3.84807 4.26986 4.37522 4.45004 4.51097 4.71004 4.89408 4.94492 5.01730 5.10834 5.19138 5.22974 5.30178 5.40381 5.42328 5.45265 5.48359 5.61660 5.67809 5.75238 5.76245 5.80749 5.91435 5.96048 6.14944 6.37148 6.40982 6.51958 6.64331 6.67818 6.76953 6.90423 6.94769 7.10782 7.15898 7.21586 7.39473 7.61229 7.91859 8.37456 8.85943 9.45355 10.97651 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.002162 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.304509 B =12949.180270 C =13897.810200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.100 3.900 3 N -0.301 5.301 4 N -0.479 5.479 5 H 0.439 0.561 6 C 0.064 3.936 7 C -0.234 4.234 8 C 0.138 3.862 9 N -0.679 5.679 10 C 0.102 3.898 11 C -0.051 4.051 12 C -0.146 4.146 13 C -0.081 4.081 14 C -0.209 4.209 15 C 0.143 3.857 16 O -0.321 6.321 17 C 0.073 3.927 18 C -0.009 4.009 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.897 5.897 23 Si 0.881 3.119 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 C -0.156 4.156 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.174 0.826 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.345 0.655 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.027 0.973 43 H 0.023 0.977 44 H 0.266 0.734 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 13.417 26.910 30.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.067 4.067 3 N -0.125 5.125 4 N -0.186 5.186 5 H 0.283 0.717 6 C -0.084 4.084 7 C -0.246 4.246 8 C 0.008 3.992 9 N -0.311 5.311 10 C -0.027 4.027 11 C -0.051 4.051 12 C -0.165 4.165 13 C -0.099 4.099 14 C -0.228 4.228 15 C 0.096 3.904 16 O -0.235 6.235 17 C -0.001 4.001 18 C -0.046 4.046 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.131 4.131 22 N -0.535 5.535 23 Si 0.708 3.292 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.188 1.188 27 C -0.176 4.176 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.191 0.809 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.163 0.837 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.076 0.924 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.215 14.812 26.815 30.803 hybrid contribution 2.146 -1.290 -0.129 2.507 sum -1.069 13.522 26.687 29.936 Atomic orbital electron populations 1.20229 0.86521 1.04075 1.02645 1.22266 0.97127 0.89876 0.97458 1.77317 0.86644 1.22715 1.25868 1.46184 1.07419 1.05401 1.59618 0.71732 1.22433 0.99298 0.85518 1.01165 1.19880 0.91587 0.96165 1.16958 1.20108 0.98876 0.89655 0.90558 1.60545 1.42445 1.20825 1.07281 1.20843 0.99980 0.88477 0.93362 1.19388 0.93400 0.97566 0.94752 1.20779 0.95925 1.03534 0.96281 1.20920 0.98818 0.96805 0.93382 1.21413 0.93282 1.06533 1.01572 1.19096 0.88442 0.92437 0.90406 1.86109 1.36732 1.76006 1.24621 1.23068 1.00090 0.99094 0.77873 1.19580 0.93680 0.96425 0.94930 1.20840 0.98842 1.42954 0.93818 0.90735 1.24940 0.98867 0.94587 0.94662 1.69892 1.35739 1.43238 1.04667 0.86754 0.84809 0.79317 0.78359 1.20064 1.21175 1.18784 1.20251 1.00072 1.05492 0.91737 0.90871 0.91113 0.89217 0.80892 0.90234 0.94746 0.83709 0.90016 0.94325 0.86245 0.86093 0.85201 0.92536 0.92516 0.95464 0.95877 0.92444 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.26 36.01 0.37 -0.21 16 2 C 0.10 0.98 7.22 -82.41 -0.59 0.38 16 3 N -0.30 -3.23 12.70 33.67 0.43 -2.80 16 4 N -0.48 -3.68 7.36 30.44 0.22 -3.45 16 5 H 0.44 2.00 8.96 -182.61 -1.64 0.36 16 6 C 0.06 0.45 11.90 -17.23 -0.20 0.24 16 7 C -0.23 -1.96 5.61 -105.06 -0.59 -2.55 16 8 C 0.14 0.99 5.79 -4.97 -0.03 0.96 16 9 N -0.68 -5.88 6.48 -116.34 -0.75 -6.64 16 10 C 0.10 0.89 5.81 -4.98 -0.03 0.86 16 11 C -0.05 -0.59 5.39 -104.65 -0.56 -1.15 16 12 C -0.15 -1.71 9.70 -39.56 -0.38 -2.09 16 13 C -0.08 -1.03 10.04 -39.60 -0.40 -1.43 16 14 C -0.21 -3.18 9.04 -39.43 -0.36 -3.54 16 15 C 0.14 2.37 6.69 -39.22 -0.26 2.11 16 16 O -0.32 -6.25 10.14 -19.43 -0.20 -6.45 16 17 C 0.07 1.50 4.68 37.16 0.17 1.67 16 18 C -0.01 -0.21 4.41 -27.89 -0.12 -0.33 16 19 C -0.53 -14.82 9.66 -34.44 -0.33 -15.15 16 20 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 21 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 22 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 23 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 27 C -0.16 -2.19 9.64 -39.43 -0.38 -2.57 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.67 7.96 -51.93 -0.41 0.26 16 31 H 0.17 0.65 8.06 -52.48 -0.42 0.23 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.34 3.25 8.71 -39.29 -0.34 2.91 16 35 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 36 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.13 1.98 6.30 -52.48 -0.33 1.65 16 40 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 41 H 0.06 1.13 7.65 -51.93 -0.40 0.74 16 42 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 43 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -33.04 379.45 -10.37 -43.41 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.09 Total: 0.63 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -3.80 Total: -20.82 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.67 Total: -39.33 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.20 Total: -6.45 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.04 -10.37 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171384239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.382 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds