Wall clock time and date at job start Tue Mar 31 2020 11:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30836 * 125.89646 * 2 1 4 4 N 1.40087 * 108.20407 * 180.25846 * 3 2 1 5 5 H 0.97002 * 126.03617 * 179.70180 * 4 3 2 6 6 C 1.34944 * 107.92189 * 359.71754 * 4 3 2 7 7 C 1.35308 * 107.74827 * 0.02562 * 6 4 3 8 8 C 1.50706 * 126.03993 * 180.02562 * 7 6 4 9 9 N 1.46900 * 109.46958 * 260.01978 * 8 7 6 10 10 C 1.46896 * 111.00195 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47382 * 179.97438 * 10 9 8 12 12 C 1.38280 * 119.97205 * 270.02476 * 11 10 9 13 13 C 1.38255 * 120.11174 * 179.97438 * 12 11 10 14 14 C 1.38163 * 120.05063 * 359.76900 * 13 12 11 15 15 C 1.38710 * 119.94702 * 0.48231 * 14 13 12 16 16 O 1.35900 * 120.05544 * 179.76528 * 15 14 13 17 17 C 1.42898 * 117.00172 * 359.72769 * 16 15 14 18 18 C 1.52997 * 109.47319 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00362 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99850 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47052 * 89.99717 * 23 21 19 25 25 H 1.48495 * 109.47307 * 209.99656 * 23 21 19 26 26 H 1.48500 * 109.47143 * 330.00164 * 23 21 19 27 27 C 1.38129 * 119.97079 * 90.00085 * 11 10 9 28 28 H 1.08999 * 109.47202 * 270.21012 * 1 2 3 29 29 H 1.09001 * 109.47351 * 30.21063 * 1 2 3 30 30 H 1.09000 * 109.47037 * 150.20842 * 1 2 3 31 31 H 1.08005 * 126.12248 * 179.97438 * 6 4 3 32 32 H 1.08996 * 109.47105 * 140.01685 * 8 7 6 33 33 H 1.09006 * 109.46860 * 20.01880 * 8 7 6 34 34 H 1.00903 * 110.99490 * 56.04413 * 9 8 7 35 35 H 1.09005 * 109.46944 * 59.99947 * 10 9 8 36 36 H 1.09002 * 109.47398 * 300.00389 * 10 9 8 37 37 H 1.08000 * 119.95034 * 0.02562 * 12 11 10 38 38 H 1.07991 * 119.97457 * 180.02562 * 13 12 11 39 39 H 1.08006 * 120.02763 * 180.24929 * 14 13 12 40 40 H 1.09002 * 109.47259 * 300.00149 * 17 16 15 41 41 H 1.09001 * 109.47074 * 60.00171 * 17 16 15 42 42 H 1.09002 * 109.47153 * 300.00307 * 18 17 16 43 43 H 1.08998 * 109.47533 * 59.99936 * 18 17 16 44 44 H 0.96994 * 119.99814 * 180.02562 * 22 21 19 45 45 H 1.07998 * 120.02418 * 0.02613 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0060 5 1 4.3908 1.2080 -0.0114 6 6 3.6141 -0.7153 -0.0033 7 6 2.3271 -1.1329 0.0036 8 6 1.8599 -2.5657 0.0093 9 7 1.4737 -2.9602 -1.3520 10 6 1.0124 -4.3544 -1.3852 11 6 0.6252 -4.7220 -2.7944 12 6 -0.6729 -4.5243 -3.2281 13 6 -1.0312 -4.8600 -4.5205 14 6 -0.0913 -5.3897 -5.3836 15 6 1.2102 -5.5938 -4.9494 16 8 2.1353 -6.1191 -5.7950 17 6 1.6968 -6.4437 -7.1158 18 6 2.8681 -7.0178 -7.9154 19 6 2.4059 -7.3595 -9.3084 20 1 1.3794 -7.1844 -9.5949 21 6 3.2936 -7.8948 -10.2175 22 7 2.8903 -8.1926 -11.4334 23 14 5.0695 -8.1958 -9.7227 24 1 5.2021 -9.5647 -9.1624 25 1 5.9450 -8.0619 -10.9146 26 1 5.4732 -7.2003 -8.6974 27 6 1.5673 -5.2557 -3.6520 28 1 -0.3633 0.0038 1.0276 29 1 -0.3634 0.8881 -0.5171 30 1 -0.3633 -0.8919 -0.5106 31 1 4.4891 -1.3485 -0.0069 32 1 1.0017 -2.6654 0.6738 33 1 2.6669 -3.2096 0.3591 34 1 2.2338 -2.8155 -1.9997 35 1 0.1483 -4.4669 -0.7303 36 1 1.8137 -5.0105 -1.0453 37 1 -1.4080 -4.1061 -2.5564 38 1 -2.0455 -4.7043 -4.8570 39 1 -0.3706 -5.6481 -6.3944 40 1 0.8967 -7.1820 -7.0618 41 1 1.3281 -5.5436 -7.6077 42 1 3.6679 -6.2792 -7.9693 43 1 3.2374 -7.9178 -7.4237 44 1 3.5147 -8.5695 -12.0728 45 1 2.5810 -5.4099 -3.3128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171384239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:11 Heat of formation + Delta-G solvation = 27.113223 kcal Electronic energy + Delta-G solvation = -24374.421764 eV Core-core repulsion = 20778.281991 eV Total energy + Delta-G solvation = -3596.139773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.11628 -41.05004 -38.86999 -36.82288 -35.41420 -33.83922 -32.92593 -32.79363 -31.02120 -30.43986 -28.73191 -27.34361 -26.67589 -24.59431 -23.35528 -23.00794 -21.83472 -21.50267 -20.37488 -19.36807 -18.79230 -18.28099 -16.99803 -16.98295 -16.82901 -16.36578 -16.10955 -15.95506 -15.49482 -15.22244 -15.07345 -14.80882 -14.51029 -14.36232 -14.23973 -13.77289 -13.69347 -13.54798 -13.15468 -13.08547 -12.92962 -12.86551 -12.59819 -12.43360 -12.40357 -12.06882 -11.93245 -11.73650 -11.54940 -11.45513 -11.37746 -10.82680 -10.27587 -9.87284 -9.44930 -9.17723 -9.05715 -8.35915 -6.42887 0.38257 0.58507 1.00529 1.35151 1.36663 1.49438 1.77760 2.08805 2.32271 2.34937 2.83846 2.98838 3.60238 3.87738 3.90078 3.94619 4.01388 4.19644 4.21055 4.22865 4.33803 4.39457 4.50137 4.53057 4.59031 4.65404 4.65719 4.79369 4.84505 4.89064 4.90194 5.10020 5.11267 5.18148 5.19488 5.22189 5.28751 5.45270 5.49857 5.58555 5.71019 5.79143 5.93829 6.15068 6.18428 6.47181 6.50998 6.55469 6.62717 6.79552 7.22239 8.79791 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.002162 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.304509 B =12949.180270 C =13897.810200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.084 3.916 3 N -0.344 5.344 4 N -0.477 5.477 5 H 0.450 0.550 6 C 0.073 3.927 7 C -0.252 4.252 8 C 0.144 3.856 9 N -0.686 5.686 10 C 0.107 3.893 11 C -0.043 4.043 12 C -0.138 4.138 13 C -0.083 4.083 14 C -0.227 4.227 15 C 0.105 3.895 16 O -0.337 6.337 17 C 0.088 3.912 18 C -0.005 4.005 19 C -0.538 4.538 20 H 0.041 0.959 21 C 0.012 3.988 22 N -0.942 5.942 23 Si 0.950 3.050 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.250 1.250 27 C -0.160 4.160 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.207 0.793 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.339 0.661 35 H 0.099 0.901 36 H 0.048 0.952 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.119 0.881 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.270 0.730 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 13.648 29.786 32.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 N -0.169 5.169 4 N -0.185 5.185 5 H 0.295 0.705 6 C -0.076 4.076 7 C -0.264 4.264 8 C 0.015 3.985 9 N -0.317 5.317 10 C -0.021 4.021 11 C -0.044 4.044 12 C -0.157 4.157 13 C -0.101 4.101 14 C -0.246 4.246 15 C 0.060 3.940 16 O -0.251 6.251 17 C 0.014 3.986 18 C -0.043 4.043 19 C -0.575 4.575 20 H 0.059 0.941 21 C -0.186 4.186 22 N -0.582 5.582 23 Si 0.773 3.227 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.174 1.174 27 C -0.179 4.179 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.224 0.776 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.157 0.843 35 H 0.118 0.882 36 H 0.066 0.934 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.137 0.863 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.457 15.065 29.721 33.411 hybrid contribution 1.796 -1.279 -0.933 2.394 sum -0.661 13.786 28.787 31.925 Atomic orbital electron populations 1.20248 0.85682 1.03830 1.03402 1.22666 0.98030 0.90317 0.97291 1.77244 0.88060 1.23946 1.27639 1.46248 1.07045 1.06093 1.59127 0.70455 1.22990 1.00112 0.85376 0.99163 1.20101 0.91968 0.96439 1.17873 1.20094 0.99602 0.89093 0.89718 1.60543 1.42501 1.20546 1.08071 1.20851 1.01059 0.88758 0.91437 1.19737 0.92937 0.95884 0.95803 1.21191 0.96516 1.01909 0.96073 1.21226 0.99392 0.95928 0.93580 1.21479 0.93582 1.07718 1.01781 1.19444 0.88733 0.94691 0.91124 1.86015 1.37863 1.77253 1.23994 1.22627 0.98357 0.98833 0.78826 1.19436 0.94858 0.96677 0.93323 1.21109 0.97598 1.42805 0.96021 0.94094 1.25904 1.03926 0.94263 0.94498 1.70028 1.37658 1.44454 1.06018 0.85658 0.78682 0.79881 0.78484 1.18860 1.20442 1.17410 1.20460 1.01074 1.05408 0.90940 0.89601 0.91697 0.88995 0.77644 0.89601 0.93370 0.84343 0.88246 0.93432 0.83338 0.83792 0.86301 0.92572 0.92744 0.95468 0.95448 0.92082 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.26 71.24 0.73 -0.29 16 2 C 0.08 1.53 7.22 43.10 0.31 1.84 16 3 N -0.34 -7.15 12.70 -47.39 -0.60 -7.75 16 4 N -0.48 -6.66 7.36 -57.59 -0.42 -7.08 16 5 H 0.45 3.54 8.96 -213.33 -1.91 1.62 16 6 C 0.07 0.84 11.90 83.54 0.99 1.83 16 7 C -0.25 -3.69 5.61 -20.15 -0.11 -3.80 16 8 C 0.14 1.64 5.79 85.56 0.50 2.13 16 9 N -0.69 -9.84 6.48 -521.98 -3.38 -13.22 16 10 C 0.11 1.50 5.81 85.56 0.50 2.00 16 11 C -0.04 -0.89 5.39 -19.88 -0.11 -1.00 16 12 C -0.14 -2.80 9.70 22.28 0.22 -2.59 16 13 C -0.08 -1.97 10.04 22.26 0.22 -1.75 16 14 C -0.23 -6.89 9.04 22.36 0.20 -6.69 16 15 C 0.11 3.48 6.69 22.50 0.15 3.63 16 16 O -0.34 -13.22 10.14 -92.43 -0.94 -14.15 16 17 C 0.09 3.72 4.68 71.98 0.34 4.06 16 18 C -0.01 -0.27 4.41 29.85 0.13 -0.13 16 19 C -0.54 -31.07 9.66 25.60 0.25 -30.82 16 20 H 0.04 2.56 7.99 -2.91 -0.02 2.53 16 21 C 0.01 0.71 5.47 84.65 0.46 1.18 16 22 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 23 Si 0.95 44.20 27.47 68.60 1.88 46.08 16 24 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 27 C -0.16 -4.25 9.64 22.37 0.22 -4.03 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.21 7.96 -2.39 -0.02 1.19 16 31 H 0.21 0.82 8.06 -2.91 -0.02 0.80 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.34 5.56 8.71 -89.69 -0.78 4.77 16 35 H 0.10 1.09 8.08 -2.38 -0.02 1.07 16 36 H 0.05 0.61 8.09 -2.39 -0.02 0.59 16 37 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 38 H 0.14 2.66 8.06 -2.92 -0.02 2.64 16 39 H 0.12 3.76 6.30 -2.91 -0.02 3.74 16 40 H 0.06 2.32 7.67 -2.39 -0.02 2.30 16 41 H 0.05 2.27 7.65 -2.39 -0.02 2.25 16 42 H 0.03 1.31 7.20 -2.39 -0.02 1.30 16 43 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -72.77 379.45 0.09 -72.68 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -1.74 Total: 15.98 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 5.00 Total: -34.43 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -4.11 Total: -86.16 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.94 Total: -14.15 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Total: -72.77 0.09 -72.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171384239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.792 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds