Wall clock time and date at job start Tue Mar 31 2020 10:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38288 * 119.92811 * 2 1 4 4 C 1.38108 * 120.06953 * 180.28021 * 3 2 1 5 5 C 1.38871 * 119.93095 * 359.46806 * 4 3 2 6 6 N 1.39923 * 120.07155 * 180.30152 * 5 4 3 7 7 C 1.34776 * 119.99787 * 213.19358 * 6 5 4 8 8 O 1.21293 * 120.00270 * 5.20206 * 7 6 5 9 9 C 1.50707 * 120.00345 * 185.20399 * 7 6 5 10 10 N 1.46893 * 109.47459 * 179.97438 * 9 7 6 11 11 C 1.46897 * 110.99910 * 66.04470 * 10 9 7 12 12 C 1.46898 * 110.99883 * 189.99770 * 10 9 7 13 13 C 1.53004 * 109.47219 * 75.84891 * 12 10 9 14 14 H 1.09002 * 109.46620 * 305.35466 * 13 12 10 15 15 C 1.47192 * 109.47323 * 65.35101 * 13 12 10 16 16 N 9.15365 * 143.26385 * 177.16213 * 2 1 3 17 17 C 1.52999 * 109.47421 * 185.35822 * 13 12 10 18 18 C 1.50697 * 109.47488 * 174.99725 * 17 13 12 19 19 H 1.08001 * 119.99900 * 359.97438 * 18 17 13 20 20 C 1.37871 * 120.00277 * 179.97438 * 18 17 13 21 21 N 1.31512 * 120.00303 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99883 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47016 * 90.00161 * 22 20 18 24 24 H 1.48498 * 109.47121 * 209.99987 * 22 20 18 25 25 H 1.48499 * 109.47362 * 330.00376 * 22 20 18 26 26 C 1.38871 * 119.85985 * 0.27427 * 5 4 3 27 27 C 1.38117 * 119.92790 * 0.02562 * 26 5 4 28 28 H 1.09005 * 109.46709 * 270.23251 * 1 2 3 29 29 H 1.08998 * 109.47363 * 30.23101 * 1 2 3 30 30 H 1.09003 * 109.47051 * 150.23629 * 1 2 3 31 31 H 1.07995 * 119.96470 * 0.04205 * 3 2 1 32 32 H 1.08006 * 120.03805 * 179.74143 * 4 3 2 33 33 H 0.96999 * 120.00166 * 33.19395 * 6 5 4 34 34 H 1.09008 * 109.46465 * 300.00194 * 9 7 6 35 35 H 1.09000 * 109.47049 * 59.99014 * 9 7 6 36 36 H 1.09002 * 109.47214 * 53.89781 * 11 10 9 37 37 H 1.09000 * 109.46920 * 173.89269 * 11 10 9 38 38 H 1.09004 * 109.47281 * 293.88850 * 11 10 9 39 39 H 1.09001 * 109.47138 * 195.84263 * 12 10 9 40 40 H 1.08998 * 109.47565 * 315.84433 * 12 10 9 41 41 H 1.09005 * 109.46735 * 295.00144 * 17 13 12 42 42 H 1.09003 * 109.47241 * 54.99567 * 17 13 12 43 43 H 0.97001 * 120.00694 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.03947 * 180.02562 * 26 5 4 45 45 H 1.07997 * 119.96854 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0058 5 6 4.2739 0.0001 -0.0006 6 7 5.6731 0.0002 -0.0001 7 6 6.3472 -0.9792 -0.6348 8 8 5.7447 -1.8070 -1.2851 9 6 7.8496 -1.0459 -0.5365 10 7 8.3404 -2.1947 -1.3092 11 6 8.0920 -2.0080 -2.7450 12 6 9.7660 -2.4342 -1.0483 13 6 9.9295 -3.0979 0.3205 14 1 9.4399 -2.4888 1.0804 15 6 9.3160 -4.4356 0.2937 16 7 8.8427 -5.4684 0.2711 17 6 11.4180 -3.2259 0.6508 18 6 11.5778 -3.7659 2.0486 19 1 10.7051 -3.9945 2.6422 20 6 12.8382 -3.9681 2.5696 21 7 12.9777 -4.4399 3.7892 22 14 14.3477 -3.5734 1.5425 23 1 14.7490 -2.1626 1.7743 24 1 15.4613 -4.4752 1.9323 25 1 14.0330 -3.7686 0.1045 26 6 3.5781 -1.2017 0.0048 27 6 2.1970 -1.1984 0.0044 28 1 -0.3633 0.0042 1.0277 29 1 -0.3634 0.8879 -0.5174 30 1 -0.3633 -0.8921 -0.5102 31 1 1.6552 2.1327 0.0007 32 1 4.1163 2.1382 -0.0101 33 1 6.1579 0.7051 0.4570 34 1 8.2808 -0.1278 -0.9358 35 1 8.1406 -1.1597 0.5078 36 1 8.5139 -1.0556 -3.0659 37 1 8.5600 -2.8190 -3.3031 38 1 7.0181 -2.0112 -2.9314 39 1 10.1717 -3.0884 -1.8200 40 1 10.3018 -1.4850 -1.0583 41 1 11.8901 -3.9064 -0.0579 42 1 11.8907 -2.2460 0.5836 43 1 13.8644 -4.5818 4.1560 44 1 4.1164 -2.1380 0.0094 45 1 1.6552 -2.1326 0.0082 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194509146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:22 Heat of formation + Delta-G solvation = 20.202230 kcal Electronic energy + Delta-G solvation = -25122.894231 eV Core-core repulsion = 21526.454775 eV Total energy + Delta-G solvation = -3596.439456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.76205 -39.07763 -37.70712 -35.67411 -35.10100 -33.59444 -32.00370 -31.76915 -31.12842 -28.84723 -27.85164 -26.33122 -24.64691 -23.24068 -22.37329 -21.47783 -21.26619 -20.40063 -18.06356 -17.38743 -16.83049 -16.78217 -16.09544 -15.60449 -15.36610 -14.98782 -14.63282 -14.47525 -14.12983 -14.02734 -13.97979 -13.62787 -13.40086 -13.14768 -12.95950 -12.64454 -12.44986 -12.38929 -12.14699 -11.95517 -11.85018 -11.77044 -11.67144 -11.36561 -11.30637 -11.22203 -10.74744 -10.41526 -10.40110 -10.00307 -9.90345 -9.68551 -9.34233 -9.10962 -8.63956 -8.34958 -8.16504 -6.12484 -4.13375 1.04862 1.22390 2.46499 2.73793 3.23201 3.33008 3.33492 3.60051 3.70891 3.81076 3.94009 4.36083 4.46924 4.63194 4.68712 4.77595 4.82490 5.00845 5.05157 5.13126 5.18847 5.21309 5.23020 5.32681 5.37047 5.39488 5.53225 5.59277 5.65835 5.68439 5.78529 5.82866 6.05688 6.10850 6.13935 6.15336 6.24225 6.34334 6.43304 6.82783 6.87476 6.89210 6.98925 7.10313 7.21486 7.61496 7.99455 8.38870 8.58075 8.91367 9.47116 11.00583 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.002463 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.346053 B =11365.433233 C =11572.914718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.108 4.108 3 C -0.103 4.103 4 C -0.145 4.145 5 C 0.147 3.853 6 N -0.679 5.679 7 C 0.514 3.486 8 O -0.498 6.498 9 C 0.033 3.967 10 N -0.527 5.527 11 C 0.020 3.980 12 C 0.059 3.941 13 C 0.022 3.978 14 H 0.102 0.898 15 C 0.251 3.749 16 N -0.468 5.468 17 C -0.006 4.006 18 C -0.528 4.528 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.896 5.896 22 Si 0.877 3.123 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.264 1.264 26 C -0.116 4.116 27 C -0.100 4.100 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.411 0.589 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.021 0.979 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.026 0.974 42 H 0.032 0.968 43 H 0.265 0.735 44 H 0.137 0.863 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.993 17.027 -10.123 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.108 4.108 3 C -0.122 4.122 4 C -0.166 4.166 5 C 0.053 3.947 6 N -0.326 5.326 7 C 0.302 3.698 8 O -0.370 6.370 9 C -0.098 4.098 10 N -0.251 5.251 11 C -0.127 4.127 12 C -0.070 4.070 13 C 0.000 4.000 14 H 0.120 0.880 15 C -0.066 4.066 16 N -0.145 5.145 17 C -0.045 4.045 18 C -0.566 4.566 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.704 3.296 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.188 1.188 26 C -0.136 4.136 27 C -0.119 4.119 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.247 0.753 34 H 0.087 0.913 35 H 0.133 0.867 36 H 0.040 0.960 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.155 0.845 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.186 14.338 -10.363 26.098 hybrid contribution 1.880 1.643 -0.268 2.511 sum -17.307 15.981 -10.631 25.844 Atomic orbital electron populations 1.20754 0.91257 1.02627 1.02183 1.19905 0.96121 0.93157 1.01645 1.20781 0.93306 0.97568 1.00499 1.20859 0.94519 0.96378 1.04835 1.17728 0.82553 0.94064 1.00329 1.43596 1.04683 1.29286 1.55000 1.20873 0.90367 0.80376 0.78219 1.90701 1.69844 1.38109 1.38360 1.22086 0.90980 0.94414 1.02324 1.61638 1.17641 1.37954 1.07882 1.22565 1.03640 0.99527 0.87004 1.22366 0.86519 1.00313 0.97793 1.18952 0.98625 0.85809 0.96584 0.87995 1.28646 0.91680 0.94379 0.91923 1.81016 1.11247 1.12509 1.09690 1.19649 0.88278 0.97944 0.98591 1.21015 0.94303 1.43916 0.97317 0.90773 1.24995 0.98993 0.94383 0.94768 1.69902 1.23423 1.44876 1.15239 0.86821 0.82891 0.78509 0.81352 1.20081 1.21310 1.18841 1.21226 0.94209 0.97889 1.00306 1.20953 0.93603 0.97677 0.99652 0.91324 0.91733 0.91633 0.85872 0.85779 0.75340 0.91291 0.86653 0.96027 0.91322 0.89697 0.89697 0.92338 0.95590 0.94947 0.92549 0.84536 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.00 0.36 -0.36 16 2 C -0.11 -0.97 5.88 -104.59 -0.62 -1.59 16 3 C -0.10 -0.87 9.69 -39.61 -0.38 -1.25 16 4 C -0.15 -1.28 9.96 -39.39 -0.39 -1.67 16 5 C 0.15 1.59 6.28 -83.70 -0.53 1.06 16 6 N -0.68 -6.35 5.34 -9.86 -0.05 -6.40 16 7 C 0.51 6.10 7.33 -10.98 -0.08 6.02 16 8 O -0.50 -7.75 11.99 5.55 0.07 -7.69 16 9 C 0.03 0.34 5.28 -4.98 -0.03 0.32 16 10 N -0.53 -6.92 4.14 -244.37 -1.01 -7.93 16 11 C 0.02 0.24 9.19 60.06 0.55 0.79 16 12 C 0.06 0.78 4.36 -3.82 -0.02 0.76 16 13 C 0.02 0.39 2.27 -93.41 -0.21 0.17 16 14 H 0.10 1.63 6.66 -51.93 -0.35 1.29 16 15 C 0.25 5.28 13.68 -20.75 -0.28 5.00 16 16 N -0.47 -10.96 18.54 42.17 0.78 -10.18 16 17 C -0.01 -0.12 3.49 -27.89 -0.10 -0.21 16 18 C -0.53 -13.97 9.15 -34.44 -0.32 -14.28 16 19 H 0.07 2.17 7.84 -52.49 -0.41 1.76 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -26.79 13.96 55.43 0.77 -26.01 16 22 Si 0.88 20.28 27.47 -169.99 -4.67 15.61 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 26 C -0.12 -1.43 8.66 -39.39 -0.34 -1.77 16 27 C -0.10 -1.05 9.69 -39.61 -0.38 -1.44 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 33 H 0.41 2.41 8.82 -40.82 -0.36 2.05 16 34 H 0.07 0.52 8.06 -51.92 -0.42 0.10 16 35 H 0.12 1.11 6.57 -51.93 -0.34 0.77 16 36 H 0.02 0.21 8.06 -51.93 -0.42 -0.21 16 37 H 0.07 0.80 7.83 -51.93 -0.41 0.39 16 38 H 0.08 1.14 6.01 -51.93 -0.31 0.83 16 39 H 0.08 1.13 7.73 -51.93 -0.40 0.73 16 40 H 0.06 0.64 8.00 -51.93 -0.42 0.22 16 41 H 0.03 0.55 7.20 -51.93 -0.37 0.18 16 42 H 0.03 0.61 7.57 -51.93 -0.39 0.22 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.14 1.95 6.41 -52.49 -0.34 1.61 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -34.77 376.11 -7.93 -42.71 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.63 Total: 0.81 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -2.86 Total: -6.58 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.49 Total: -50.52 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.07 Total: -7.69 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.77 -7.93 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194509146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.909 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds