Wall clock time and date at job start Tue Mar 31 2020 10:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38288 * 119.92811 * 2 1 4 4 C 1.38108 * 120.06953 * 180.28021 * 3 2 1 5 5 C 1.38871 * 119.93095 * 359.46806 * 4 3 2 6 6 N 1.39923 * 120.07155 * 180.30152 * 5 4 3 7 7 C 1.34776 * 119.99787 * 213.19358 * 6 5 4 8 8 O 1.21293 * 120.00270 * 5.20206 * 7 6 5 9 9 C 1.50707 * 120.00345 * 185.20399 * 7 6 5 10 10 N 1.46893 * 109.47459 * 179.97438 * 9 7 6 11 11 C 1.46897 * 110.99910 * 66.04470 * 10 9 7 12 12 C 1.46898 * 110.99883 * 189.99770 * 10 9 7 13 13 C 1.53004 * 109.47219 * 75.84891 * 12 10 9 14 14 H 1.09002 * 109.46620 * 305.35466 * 13 12 10 15 15 C 1.47192 * 109.47323 * 65.35101 * 13 12 10 16 16 N 9.15365 * 143.26385 * 177.16213 * 2 1 3 17 17 C 1.52999 * 109.47421 * 185.35822 * 13 12 10 18 18 C 1.50697 * 109.47488 * 174.99725 * 17 13 12 19 19 H 1.08001 * 119.99900 * 359.97438 * 18 17 13 20 20 C 1.37871 * 120.00277 * 179.97438 * 18 17 13 21 21 N 1.31512 * 120.00303 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99883 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47016 * 90.00161 * 22 20 18 24 24 H 1.48498 * 109.47121 * 209.99987 * 22 20 18 25 25 H 1.48499 * 109.47362 * 330.00376 * 22 20 18 26 26 C 1.38871 * 119.85985 * 0.27427 * 5 4 3 27 27 C 1.38117 * 119.92790 * 0.02562 * 26 5 4 28 28 H 1.09005 * 109.46709 * 270.23251 * 1 2 3 29 29 H 1.08998 * 109.47363 * 30.23101 * 1 2 3 30 30 H 1.09003 * 109.47051 * 150.23629 * 1 2 3 31 31 H 1.07995 * 119.96470 * 0.04205 * 3 2 1 32 32 H 1.08006 * 120.03805 * 179.74143 * 4 3 2 33 33 H 0.96999 * 120.00166 * 33.19395 * 6 5 4 34 34 H 1.09008 * 109.46465 * 300.00194 * 9 7 6 35 35 H 1.09000 * 109.47049 * 59.99014 * 9 7 6 36 36 H 1.09002 * 109.47214 * 53.89781 * 11 10 9 37 37 H 1.09000 * 109.46920 * 173.89269 * 11 10 9 38 38 H 1.09004 * 109.47281 * 293.88850 * 11 10 9 39 39 H 1.09001 * 109.47138 * 195.84263 * 12 10 9 40 40 H 1.08998 * 109.47565 * 315.84433 * 12 10 9 41 41 H 1.09005 * 109.46735 * 295.00144 * 17 13 12 42 42 H 1.09003 * 109.47241 * 54.99567 * 17 13 12 43 43 H 0.97001 * 120.00694 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.03947 * 180.02562 * 26 5 4 45 45 H 1.07997 * 119.96854 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0058 5 6 4.2739 0.0001 -0.0006 6 7 5.6731 0.0002 -0.0001 7 6 6.3472 -0.9792 -0.6348 8 8 5.7447 -1.8070 -1.2851 9 6 7.8496 -1.0459 -0.5365 10 7 8.3404 -2.1947 -1.3092 11 6 8.0920 -2.0080 -2.7450 12 6 9.7660 -2.4342 -1.0483 13 6 9.9295 -3.0979 0.3205 14 1 9.4399 -2.4888 1.0804 15 6 9.3160 -4.4356 0.2937 16 7 8.8427 -5.4684 0.2711 17 6 11.4180 -3.2259 0.6508 18 6 11.5778 -3.7659 2.0486 19 1 10.7051 -3.9945 2.6422 20 6 12.8382 -3.9681 2.5696 21 7 12.9777 -4.4399 3.7892 22 14 14.3477 -3.5734 1.5425 23 1 14.7490 -2.1626 1.7743 24 1 15.4613 -4.4752 1.9323 25 1 14.0330 -3.7686 0.1045 26 6 3.5781 -1.2017 0.0048 27 6 2.1970 -1.1984 0.0044 28 1 -0.3633 0.0042 1.0277 29 1 -0.3634 0.8879 -0.5174 30 1 -0.3633 -0.8921 -0.5102 31 1 1.6552 2.1327 0.0007 32 1 4.1163 2.1382 -0.0101 33 1 6.1579 0.7051 0.4570 34 1 8.2808 -0.1278 -0.9358 35 1 8.1406 -1.1597 0.5078 36 1 8.5139 -1.0556 -3.0659 37 1 8.5600 -2.8190 -3.3031 38 1 7.0181 -2.0112 -2.9314 39 1 10.1717 -3.0884 -1.8200 40 1 10.3018 -1.4850 -1.0583 41 1 11.8901 -3.9064 -0.0579 42 1 11.8907 -2.2460 0.5836 43 1 13.8644 -4.5818 4.1560 44 1 4.1164 -2.1380 0.0094 45 1 1.6552 -2.1326 0.0082 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194509146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:21 Heat of formation + Delta-G solvation = -3.320681 kcal Electronic energy + Delta-G solvation = -25123.914261 eV Core-core repulsion = 21526.454775 eV Total energy + Delta-G solvation = -3597.459486 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59251 -39.91037 -38.86773 -37.04870 -36.00831 -35.38514 -33.65492 -32.61414 -31.86708 -29.76504 -29.27999 -27.04815 -25.96215 -24.02466 -23.30251 -23.22449 -22.11621 -21.24358 -18.93374 -18.88309 -18.19783 -18.10580 -16.96612 -16.52788 -16.32013 -15.95703 -15.88276 -15.71728 -15.25881 -14.97443 -14.73891 -14.64342 -14.55643 -14.33773 -14.19269 -13.97923 -13.77468 -13.35443 -13.27655 -13.08891 -12.96575 -12.80659 -12.67594 -12.66019 -12.50776 -12.28898 -12.01502 -12.00321 -11.62190 -11.54921 -11.26076 -11.19171 -10.71331 -10.69377 -9.86885 -9.21690 -8.92147 -8.22017 -6.27783 0.29374 0.46733 1.44413 1.48799 1.58565 1.62655 1.96547 2.06846 2.15610 2.43671 2.85543 3.00390 3.14731 3.35130 3.69967 3.97082 4.03558 4.04005 4.13549 4.26418 4.36464 4.38726 4.45185 4.50451 4.62280 4.63980 4.67327 4.75332 4.79973 4.86016 4.87538 4.92685 5.08969 5.15277 5.18948 5.26617 5.37518 5.41449 5.47274 5.59142 5.66414 5.71465 5.98501 6.08368 6.12550 6.29457 6.50363 6.80206 6.93191 7.20617 7.36682 8.95038 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.002463 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.346053 B =11365.433233 C =11572.914718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.111 4.111 3 C -0.103 4.103 4 C -0.140 4.140 5 C 0.129 3.871 6 N -0.665 5.665 7 C 0.509 3.491 8 O -0.544 6.544 9 C 0.034 3.966 10 N -0.557 5.557 11 C 0.028 3.972 12 C 0.071 3.929 13 C 0.025 3.975 14 H 0.116 0.884 15 C 0.262 3.738 16 N -0.523 5.523 17 C -0.003 4.003 18 C -0.530 4.530 19 H 0.026 0.974 20 C 0.001 3.999 21 N -0.956 5.956 22 Si 0.950 3.050 23 H -0.253 1.253 24 H -0.299 1.299 25 H -0.236 1.236 26 C -0.145 4.145 27 C -0.117 4.117 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.428 0.572 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.264 0.736 44 H 0.104 0.896 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.362 21.102 -12.023 29.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.112 4.112 3 C -0.122 4.122 4 C -0.160 4.160 5 C 0.035 3.965 6 N -0.313 5.313 7 C 0.298 3.702 8 O -0.420 6.420 9 C -0.096 4.096 10 N -0.282 5.282 11 C -0.119 4.119 12 C -0.058 4.058 13 C 0.003 3.997 14 H 0.133 0.867 15 C -0.055 4.055 16 N -0.201 5.201 17 C -0.041 4.041 18 C -0.568 4.568 19 H 0.044 0.956 20 C -0.196 4.196 21 N -0.597 5.597 22 Si 0.773 3.227 23 H -0.178 1.178 24 H -0.226 1.226 25 H -0.159 1.159 26 C -0.165 4.165 27 C -0.136 4.136 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.172 0.828 32 H 0.172 0.828 33 H 0.267 0.733 34 H 0.128 0.872 35 H 0.141 0.859 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.122 0.878 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.576 18.466 -12.265 28.923 hybrid contribution 1.522 0.367 0.412 1.619 sum -17.055 18.833 -11.854 28.037 Atomic orbital electron populations 1.20802 0.89344 1.03517 1.03016 1.20249 0.97613 0.92779 1.00575 1.21214 0.93440 0.98454 0.99057 1.21199 0.94910 0.96577 1.03295 1.17910 0.83199 0.94286 1.01105 1.43453 1.04329 1.29173 1.54298 1.21293 0.91214 0.80039 0.77659 1.90696 1.70817 1.39926 1.40582 1.22195 0.89634 0.95236 1.02570 1.61439 1.17695 1.40183 1.08881 1.22437 1.02341 1.00810 0.86331 1.22235 0.87228 1.01678 0.94632 1.19163 0.96316 0.84166 1.00011 0.86671 1.29598 0.90658 0.94971 0.90235 1.81009 1.12948 1.14359 1.11758 1.19602 0.90740 0.99255 0.94551 1.21401 0.92646 1.43021 0.99704 0.95571 1.26073 1.03116 0.94425 0.95968 1.70098 1.24190 1.47505 1.17891 0.85667 0.77471 0.78965 0.80615 1.17759 1.22627 1.15901 1.21133 0.95099 0.97513 1.02774 1.21092 0.93188 0.98851 1.00441 0.90418 0.90055 0.91575 0.82838 0.82774 0.73250 0.87221 0.85942 0.93298 0.91644 0.91921 0.89609 0.88269 0.95528 0.91158 0.92740 0.87831 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 71.23 0.71 -0.52 16 2 C -0.11 -1.90 5.88 -19.84 -0.12 -2.02 16 3 C -0.10 -1.48 9.69 22.25 0.22 -1.27 16 4 C -0.14 -2.14 9.96 22.39 0.22 -1.91 16 5 C 0.13 2.73 6.28 38.15 0.24 2.97 16 6 N -0.66 -11.67 5.34 -303.49 -1.62 -13.29 16 7 C 0.51 11.78 7.33 87.66 0.64 12.42 16 8 O -0.54 -17.67 11.99 -3.07 -0.04 -17.70 16 9 C 0.03 0.61 5.28 85.56 0.45 1.06 16 10 N -0.56 -13.41 4.14 -927.04 -3.84 -17.25 16 11 C 0.03 0.62 9.19 127.69 1.17 1.79 16 12 C 0.07 1.61 4.36 86.31 0.38 1.99 16 13 C 0.03 0.83 2.27 -12.60 -0.03 0.80 16 14 H 0.12 3.47 6.66 -2.39 -0.02 3.45 16 15 C 0.26 11.09 13.68 89.44 1.22 12.31 16 16 N -0.52 -25.31 18.54 20.01 0.37 -24.94 16 17 C 0.00 -0.10 3.49 29.85 0.10 0.01 16 18 C -0.53 -28.11 9.15 25.60 0.23 -27.88 16 19 H 0.03 1.59 7.84 -2.91 -0.02 1.56 16 20 C 0.00 0.03 5.47 84.65 0.46 0.49 16 21 N -0.96 -58.87 13.96 21.44 0.30 -58.57 16 22 Si 0.95 40.51 27.47 68.60 1.88 42.39 16 23 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 24 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.24 -8.94 6.54 99.48 0.65 -8.29 16 26 C -0.14 -3.80 8.66 22.39 0.19 -3.60 16 27 C -0.12 -2.59 9.69 22.25 0.22 -2.37 16 28 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.08 0.65 8.09 -2.39 -0.02 0.63 16 30 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 31 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.43 4.00 8.82 -92.71 -0.82 3.18 16 34 H 0.11 1.10 8.06 -2.38 -0.02 1.09 16 35 H 0.12 2.01 6.57 -2.39 -0.02 2.00 16 36 H 0.05 0.78 8.06 -2.39 -0.02 0.76 16 37 H 0.06 1.42 7.83 -2.39 -0.02 1.41 16 38 H 0.06 1.67 6.01 -2.38 -0.01 1.66 16 39 H 0.09 1.98 7.73 -2.39 -0.02 1.96 16 40 H 0.10 1.53 8.00 -2.39 -0.02 1.51 16 41 H 0.03 1.04 7.20 -2.38 -0.02 1.02 16 42 H 0.07 2.27 7.57 -2.39 -0.02 2.25 16 43 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 44 H 0.10 3.34 6.41 -2.91 -0.02 3.32 16 45 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -81.90 376.11 3.52 -78.38 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.13 Total: 16.71 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 6.32 Total: -5.73 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -4.79 Total: -114.04 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.04 Total: -17.70 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.88 Total: 42.39 kcal Total: -81.90 3.52 -78.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194509146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.060 kcal (2) G-P(sol) polarization free energy of solvation -81.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds