Wall clock time and date at job start Tue Mar 31 2020 10:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38834 * 119.66774 * 2 1 4 4 C 1.36628 * 120.53209 * 179.97438 * 3 2 1 5 5 C 1.39629 * 119.76327 * 359.97438 * 4 3 2 6 6 C 1.46482 * 134.03481 * 179.97438 * 5 4 3 7 7 C 1.50695 * 126.50522 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.47058 * 84.99511 * 7 6 5 9 9 N 1.46505 * 109.47269 * 180.02562 * 8 7 6 10 10 C 1.34770 * 120.00238 * 180.02562 * 9 8 7 11 11 O 1.21588 * 120.00039 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00079 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99808 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46721 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.46919 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99695 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00163 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00024 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00316 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46765 * 60.00249 * 19 17 15 21 21 H 1.48494 * 109.46912 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46908 * 300.00254 * 19 17 15 23 23 C 1.34241 * 106.99890 * 180.02562 * 6 5 4 24 24 N 1.36833 * 109.93022 * 0.02562 * 23 6 5 25 25 H 0.97000 * 125.06652 * 179.97438 * 24 23 6 26 26 C 1.37688 * 109.87243 * 0.02562 * 24 23 6 27 27 C 1.37747 * 119.66772 * 180.16408 * 2 1 3 28 28 H 1.09002 * 109.46470 * 90.00378 * 1 2 3 29 29 H 1.08999 * 109.47076 * 210.00108 * 1 2 3 30 30 H 1.08992 * 109.47445 * 330.00428 * 1 2 3 31 31 H 1.07999 * 119.73036 * 359.96944 * 3 2 1 32 32 H 1.07997 * 120.11684 * 179.97438 * 4 3 2 33 33 H 1.08991 * 109.47667 * 204.99791 * 7 6 5 34 34 H 1.09003 * 109.47274 * 325.00323 * 7 6 5 35 35 H 1.09004 * 109.47560 * 300.00204 * 8 7 6 36 36 H 1.09002 * 109.47136 * 60.00475 * 8 7 6 37 37 H 0.96998 * 119.99840 * 359.97438 * 9 8 7 38 38 H 0.96998 * 119.99999 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.46728 * 299.99198 * 13 12 10 40 40 H 1.08988 * 109.47542 * 59.99489 * 13 12 10 41 41 H 1.08999 * 109.47033 * 299.99218 * 14 13 12 42 42 H 1.09001 * 109.47024 * 59.99408 * 14 13 12 43 43 H 0.96993 * 120.00316 * 179.97438 * 18 17 15 44 44 H 1.08002 * 125.03847 * 180.02562 * 23 6 5 45 45 H 1.08001 * 120.11380 * 359.83731 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2269 0.0005 5 6 4.2717 0.0254 0.0016 6 6 5.6966 -0.3142 0.0019 7 6 6.8495 0.6562 0.0016 8 6 7.1584 1.0816 1.4385 9 7 8.2789 2.0255 1.4382 10 6 8.7290 2.5375 2.6007 11 8 8.2049 2.2165 3.6498 12 7 9.7594 3.4063 2.6003 13 6 10.2491 3.9624 3.8642 14 6 11.4150 4.9130 3.5853 15 6 11.9183 5.4856 4.8852 16 1 11.4527 5.2004 5.8171 17 6 12.9730 6.3736 4.8850 18 7 13.5396 6.7213 3.7502 19 14 13.5964 7.0840 6.4963 20 1 14.0561 5.9813 7.3784 21 1 14.7281 8.0065 6.2255 22 1 12.5001 7.8292 7.1657 23 6 5.7807 -1.6540 0.0026 24 7 4.5260 -2.2001 0.0021 25 1 4.3319 -3.1505 0.0020 26 6 3.5801 -1.1996 0.0005 27 6 2.1888 -1.1969 -0.0034 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 1.6444 2.1359 -0.0005 32 1 4.0881 2.1692 0.0001 33 1 7.7273 0.1775 -0.4323 34 1 6.5854 1.5340 -0.5882 35 1 6.2806 1.5604 1.8725 36 1 7.4225 0.2039 2.0284 37 1 8.6973 2.2813 0.6013 38 1 10.1773 3.6627 1.7634 39 1 9.4445 4.5085 4.3567 40 1 10.5874 3.1528 4.5106 41 1 12.2195 4.3666 3.0930 42 1 11.0770 5.7227 2.9386 43 1 14.2813 7.3463 3.7499 44 1 6.7021 -2.2174 0.0033 45 1 1.6453 -2.1301 -0.0034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273069039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:56 Heat of formation + Delta-G solvation = 2.957049 kcal Electronic energy + Delta-G solvation = -24173.069551 eV Core-core repulsion = 20575.882288 eV Total energy + Delta-G solvation = -3597.187263 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55121 -39.45282 -37.66536 -35.71711 -34.57859 -33.13724 -32.71933 -31.77618 -30.16951 -29.52004 -28.09710 -26.37049 -24.72902 -23.10381 -23.00331 -21.18885 -20.97867 -20.54143 -19.56565 -18.17059 -17.64163 -16.56089 -16.34001 -15.82348 -15.54796 -15.31663 -14.81429 -14.56931 -14.47284 -14.25656 -13.99042 -13.95836 -13.65360 -13.54620 -13.16241 -12.74788 -12.54999 -12.38645 -12.22395 -12.07393 -11.95505 -11.50036 -11.33242 -11.14884 -11.00670 -10.94896 -10.61547 -10.25549 -9.87665 -9.75135 -9.50087 -9.23010 -8.91172 -8.43601 -8.38580 -8.16886 -7.86622 -6.05471 -4.07927 0.87130 1.38386 2.35972 2.82741 3.19598 3.34255 3.37727 3.41919 3.64430 3.69641 4.42633 4.43199 4.50872 4.62503 4.71875 4.85644 4.92816 4.99831 5.05953 5.11685 5.23173 5.29341 5.31464 5.41478 5.44495 5.53010 5.62301 5.67359 5.82998 6.01403 6.02564 6.29756 6.36336 6.37386 6.45962 6.48040 6.53265 6.71946 6.83903 6.92112 7.08080 7.23612 7.33134 7.62021 7.68334 7.93978 8.30864 8.52719 8.97150 9.09429 9.56520 11.06147 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.027601 B = 0.001790 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.219876 B =15642.095831 C =16136.979968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 C -0.146 4.146 4 C -0.063 4.063 5 C -0.104 4.104 6 C -0.163 4.163 7 C -0.054 4.054 8 C 0.146 3.854 9 N -0.755 5.755 10 C 0.697 3.303 11 O -0.599 6.599 12 N -0.740 5.740 13 C 0.140 3.860 14 C 0.013 3.987 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.055 3.945 24 N -0.596 5.596 25 H 0.415 0.585 26 C 0.099 3.901 27 C -0.135 4.135 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.393 0.607 38 H 0.393 0.607 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.262 0.738 44 H 0.171 0.829 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.363 -18.134 -14.731 32.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.068 4.068 3 C -0.165 4.165 4 C -0.082 4.082 5 C -0.109 4.109 6 C -0.171 4.171 7 C -0.092 4.092 8 C 0.022 3.978 9 N -0.412 5.412 10 C 0.397 3.603 11 O -0.478 6.478 12 N -0.394 5.394 13 C 0.017 3.983 14 C -0.025 4.025 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.071 4.071 24 N -0.199 5.199 25 H 0.252 0.748 26 C -0.008 4.008 27 C -0.156 4.156 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.227 0.773 38 H 0.226 0.774 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.188 0.812 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -22.691 -18.443 -13.783 32.327 hybrid contribution 0.786 0.141 0.036 0.800 sum -21.905 -18.302 -13.747 31.683 Atomic orbital electron populations 1.20769 0.91095 1.02764 1.02212 1.19549 0.95710 0.92286 0.99262 1.20539 0.93951 0.97370 1.04645 1.20306 0.93615 0.96557 0.97715 1.19066 0.92542 0.92521 1.06733 1.19980 0.92234 0.92886 1.12016 1.20069 0.95095 0.97719 0.96367 1.21090 0.88620 0.92193 0.95926 1.45153 1.37931 1.50188 1.07925 1.16071 0.80761 0.79625 0.83825 1.90889 1.61195 1.65090 1.30605 1.45531 1.34852 1.47302 1.11669 1.21573 0.97415 0.96558 0.82727 1.19325 0.91595 0.93582 0.97974 1.21028 1.16053 1.25996 0.92858 0.92274 1.24993 0.96441 0.96363 0.96508 1.69947 1.23924 1.34071 1.25439 0.86569 0.78340 0.78964 0.83632 1.20130 1.21283 1.20124 1.21645 0.87692 0.93691 1.04063 1.41707 1.04655 1.07964 1.65548 0.74833 1.18213 0.90714 0.88019 1.03850 1.19819 0.89855 0.98110 1.07768 0.91251 0.91754 0.91364 0.86035 0.85902 0.90565 0.90519 0.91833 0.91978 0.77348 0.77435 0.92834 0.92863 0.95972 0.95960 0.92850 0.81217 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 9.99 36.01 0.36 -0.29 16 2 C -0.07 -0.57 5.88 -104.58 -0.61 -1.19 16 3 C -0.15 -1.34 9.62 -39.94 -0.38 -1.72 16 4 C -0.06 -0.65 10.05 -39.64 -0.40 -1.05 16 5 C -0.10 -1.12 6.35 -105.14 -0.67 -1.78 16 6 C -0.16 -1.55 5.57 -102.72 -0.57 -2.12 16 7 C -0.05 -0.46 5.86 -27.88 -0.16 -0.63 16 8 C 0.15 1.75 5.66 -4.04 -0.02 1.72 16 9 N -0.76 -9.86 5.56 -65.22 -0.36 -10.23 16 10 C 0.70 12.73 8.57 -86.92 -0.74 11.99 16 11 O -0.60 -13.55 16.34 5.29 0.09 -13.47 16 12 N -0.74 -13.51 5.56 -65.23 -0.36 -13.87 16 13 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 14 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 15 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 16 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 19 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.06 0.42 11.73 -16.73 -0.20 0.23 16 24 N -0.60 -4.38 6.07 -10.65 -0.06 -4.44 16 25 H 0.42 1.76 8.96 -40.82 -0.37 1.40 16 26 C 0.10 0.96 7.28 -83.98 -0.61 0.35 16 27 C -0.13 -1.17 9.71 -39.43 -0.38 -1.55 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.39 3.88 8.49 -40.82 -0.35 3.53 16 38 H 0.39 6.10 8.49 -40.82 -0.35 5.75 16 39 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.05 1.23 8.14 -51.94 -0.42 0.81 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -35.40 382.86 -11.13 -46.53 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.94 Total: 4.90 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -4.97 Total: -6.19 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.05 Total: -54.13 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.47 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.40 -11.13 -46.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273069039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.487 kcal (2) G-P(sol) polarization free energy of solvation -35.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds