Wall clock time and date at job start Tue Mar 31 2020 10:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38834 * 119.66774 * 2 1 4 4 C 1.36628 * 120.53209 * 179.97438 * 3 2 1 5 5 C 1.39629 * 119.76327 * 359.97438 * 4 3 2 6 6 C 1.46482 * 134.03481 * 179.97438 * 5 4 3 7 7 C 1.50695 * 126.50522 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.47058 * 84.99511 * 7 6 5 9 9 N 1.46505 * 109.47269 * 180.02562 * 8 7 6 10 10 C 1.34770 * 120.00238 * 180.02562 * 9 8 7 11 11 O 1.21588 * 120.00039 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00079 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99808 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46721 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.46919 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99695 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00163 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00024 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00316 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46765 * 60.00249 * 19 17 15 21 21 H 1.48494 * 109.46912 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46908 * 300.00254 * 19 17 15 23 23 C 1.34241 * 106.99890 * 180.02562 * 6 5 4 24 24 N 1.36833 * 109.93022 * 0.02562 * 23 6 5 25 25 H 0.97000 * 125.06652 * 179.97438 * 24 23 6 26 26 C 1.37688 * 109.87243 * 0.02562 * 24 23 6 27 27 C 1.37747 * 119.66772 * 180.16408 * 2 1 3 28 28 H 1.09002 * 109.46470 * 90.00378 * 1 2 3 29 29 H 1.08999 * 109.47076 * 210.00108 * 1 2 3 30 30 H 1.08992 * 109.47445 * 330.00428 * 1 2 3 31 31 H 1.07999 * 119.73036 * 359.96944 * 3 2 1 32 32 H 1.07997 * 120.11684 * 179.97438 * 4 3 2 33 33 H 1.08991 * 109.47667 * 204.99791 * 7 6 5 34 34 H 1.09003 * 109.47274 * 325.00323 * 7 6 5 35 35 H 1.09004 * 109.47560 * 300.00204 * 8 7 6 36 36 H 1.09002 * 109.47136 * 60.00475 * 8 7 6 37 37 H 0.96998 * 119.99840 * 359.97438 * 9 8 7 38 38 H 0.96998 * 119.99999 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.46728 * 299.99198 * 13 12 10 40 40 H 1.08988 * 109.47542 * 59.99489 * 13 12 10 41 41 H 1.08999 * 109.47033 * 299.99218 * 14 13 12 42 42 H 1.09001 * 109.47024 * 59.99408 * 14 13 12 43 43 H 0.96993 * 120.00316 * 179.97438 * 18 17 15 44 44 H 1.08002 * 125.03847 * 180.02562 * 23 6 5 45 45 H 1.08001 * 120.11380 * 359.83731 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2269 0.0005 5 6 4.2717 0.0254 0.0016 6 6 5.6966 -0.3142 0.0019 7 6 6.8495 0.6562 0.0016 8 6 7.1584 1.0816 1.4385 9 7 8.2789 2.0255 1.4382 10 6 8.7290 2.5375 2.6007 11 8 8.2049 2.2165 3.6498 12 7 9.7594 3.4063 2.6003 13 6 10.2491 3.9624 3.8642 14 6 11.4150 4.9130 3.5853 15 6 11.9183 5.4856 4.8852 16 1 11.4527 5.2004 5.8171 17 6 12.9730 6.3736 4.8850 18 7 13.5396 6.7213 3.7502 19 14 13.5964 7.0840 6.4963 20 1 14.0561 5.9813 7.3784 21 1 14.7281 8.0065 6.2255 22 1 12.5001 7.8292 7.1657 23 6 5.7807 -1.6540 0.0026 24 7 4.5260 -2.2001 0.0021 25 1 4.3319 -3.1505 0.0020 26 6 3.5801 -1.1996 0.0005 27 6 2.1888 -1.1969 -0.0034 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 1.6444 2.1359 -0.0005 32 1 4.0881 2.1692 0.0001 33 1 7.7273 0.1775 -0.4323 34 1 6.5854 1.5340 -0.5882 35 1 6.2806 1.5604 1.8725 36 1 7.4225 0.2039 2.0284 37 1 8.6973 2.2813 0.6013 38 1 10.1773 3.6627 1.7634 39 1 9.4445 4.5085 4.3567 40 1 10.5874 3.1528 4.5106 41 1 12.2195 4.3666 3.0930 42 1 11.0770 5.7227 2.9386 43 1 14.2813 7.3463 3.7499 44 1 6.7021 -2.2174 0.0033 45 1 1.6453 -2.1301 -0.0034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273069039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:55 Heat of formation + Delta-G solvation = -20.188448 kcal Electronic energy + Delta-G solvation = -24174.073215 eV Core-core repulsion = 20575.882288 eV Total energy + Delta-G solvation = -3598.190927 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.17771 -40.92237 -38.28914 -36.98994 -36.19574 -34.81106 -33.89679 -32.55905 -31.40731 -30.67961 -29.03905 -27.02292 -26.54362 -24.16722 -23.67657 -22.82015 -21.98450 -21.81143 -20.36816 -19.27613 -18.57119 -18.35241 -17.23539 -17.20007 -16.76127 -16.47788 -16.07497 -15.63286 -15.58324 -15.24382 -15.11696 -15.02201 -14.73808 -14.53341 -14.25515 -14.14678 -13.57747 -13.26898 -13.18791 -12.93005 -12.91844 -12.87908 -12.64194 -12.51830 -12.22287 -12.11398 -12.02896 -11.68029 -11.63260 -11.48931 -11.19932 -10.58181 -10.41792 -10.31202 -9.67494 -9.04630 -8.50321 -8.21939 -6.32142 0.21727 0.69828 1.43059 1.45663 1.53332 1.63716 1.92686 2.20321 2.29899 2.43353 2.95148 3.12632 3.44819 3.81772 3.91315 4.06841 4.16592 4.21514 4.27893 4.42680 4.51178 4.52566 4.54569 4.56133 4.67705 4.79685 4.87524 4.88739 4.93836 4.95239 5.04397 5.12871 5.25485 5.32721 5.34247 5.53596 5.56477 5.62019 5.64081 5.72353 5.81206 5.83583 5.86910 6.10909 6.19675 6.27549 6.75008 6.80571 7.19076 7.36938 7.64421 8.89652 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.027601 B = 0.001790 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.219876 B =15642.095831 C =16136.979968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.078 4.078 3 C -0.155 4.155 4 C -0.087 4.087 5 C -0.131 4.131 6 C -0.195 4.195 7 C -0.038 4.038 8 C 0.150 3.850 9 N -0.731 5.731 10 C 0.696 3.304 11 O -0.644 6.644 12 N -0.733 5.733 13 C 0.160 3.840 14 C 0.024 3.976 15 C -0.548 4.548 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.965 3.035 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.269 1.269 23 C 0.068 3.932 24 N -0.587 5.587 25 H 0.430 0.570 26 C 0.080 3.920 27 C -0.140 4.140 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.052 0.948 37 H 0.413 0.587 38 H 0.408 0.592 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.266 0.734 44 H 0.203 0.797 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.630 -19.301 -15.293 33.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.080 4.080 3 C -0.174 4.174 4 C -0.105 4.105 5 C -0.135 4.135 6 C -0.202 4.202 7 C -0.076 4.076 8 C 0.026 3.974 9 N -0.388 5.388 10 C 0.395 3.605 11 O -0.527 6.527 12 N -0.388 5.388 13 C 0.036 3.964 14 C -0.014 4.014 15 C -0.586 4.586 16 H 0.076 0.924 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.789 3.211 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.194 1.194 23 C -0.059 4.059 24 N -0.191 5.191 25 H 0.269 0.731 26 C -0.027 4.027 27 C -0.161 4.161 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.139 0.861 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.249 0.751 38 H 0.243 0.757 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.074 0.926 44 H 0.220 0.780 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.973 -19.639 -14.419 33.487 hybrid contribution 0.812 0.448 0.157 0.941 sum -22.161 -19.191 -14.262 32.601 Atomic orbital electron populations 1.20799 0.89209 1.03497 1.03048 1.19906 0.97201 0.92032 0.98821 1.20797 0.93860 0.98403 1.04381 1.20466 0.94313 0.96735 0.99010 1.19416 0.93654 0.93133 1.07345 1.20131 0.91872 0.93921 1.14302 1.19935 0.95882 0.98045 0.93746 1.21146 0.86949 0.91012 0.98276 1.44963 1.37537 1.49160 1.07151 1.16214 0.80352 0.79417 0.84500 1.90859 1.62527 1.66562 1.32733 1.45206 1.35151 1.47379 1.11071 1.21063 0.95847 0.95435 0.84092 1.19131 0.92105 0.93453 0.96683 1.21443 1.16662 1.26658 0.93878 0.92367 1.25860 0.96532 0.96599 1.00130 1.70049 1.24360 1.34568 1.27507 0.85502 0.77922 0.78351 0.79285 1.19367 1.20517 1.19444 1.22171 0.88694 0.93445 1.01566 1.41758 1.04236 1.08512 1.64582 0.73086 1.18461 0.91442 0.88406 1.04421 1.20132 0.89779 0.99069 1.07082 0.90263 0.90746 0.90927 0.84901 0.86061 0.88150 0.90125 0.94149 0.92910 0.75052 0.75663 0.94060 0.93924 0.97129 0.97231 0.92555 0.78031 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.99 71.24 0.71 -0.42 16 2 C -0.08 -1.29 5.88 -19.84 -0.12 -1.41 16 3 C -0.16 -2.89 9.62 22.04 0.21 -2.68 16 4 C -0.09 -1.84 10.05 22.23 0.22 -1.62 16 5 C -0.13 -2.81 6.35 -20.20 -0.13 -2.94 16 6 C -0.19 -3.49 5.57 -18.63 -0.10 -3.60 16 7 C -0.04 -0.59 5.86 29.85 0.17 -0.42 16 8 C 0.15 3.51 5.66 86.38 0.49 4.00 16 9 N -0.73 -18.34 5.56 -478.52 -2.66 -21.00 16 10 C 0.70 25.23 8.57 179.06 1.53 26.76 16 11 O -0.64 -29.57 16.34 -3.99 -0.07 -29.64 16 12 N -0.73 -26.58 5.56 -478.54 -2.66 -29.24 16 13 C 0.16 7.18 5.61 86.38 0.48 7.66 16 14 C 0.02 1.22 5.09 29.85 0.15 1.37 16 15 C -0.55 -31.07 9.11 25.60 0.23 -30.84 16 16 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 17 C 0.01 0.43 5.46 84.65 0.46 0.89 16 18 N -0.93 -54.46 13.29 21.45 0.28 -54.18 16 19 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 C 0.07 0.90 11.73 83.00 0.97 1.87 16 24 N -0.59 -7.62 6.07 -187.60 -1.14 -8.76 16 25 H 0.43 2.74 8.96 -92.71 -0.83 1.91 16 26 C 0.08 1.49 7.28 39.03 0.28 1.78 16 27 C -0.14 -2.30 9.71 22.37 0.22 -2.09 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.62 8.08 -2.39 -0.02 0.60 16 30 H 0.07 0.68 8.08 -2.39 -0.02 0.66 16 31 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.12 2.41 8.06 -2.91 -0.02 2.38 16 33 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 35 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.41 7.30 8.49 -92.71 -0.79 6.51 16 38 H 0.41 12.30 8.49 -92.71 -0.79 11.52 16 39 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 45 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -76.99 382.86 0.20 -76.78 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -1.38 Total: 21.65 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 5.80 Total: -1.65 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -6.18 Total: -113.18 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.07 Total: -29.64 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -76.99 0.20 -76.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273069039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.594 kcal (2) G-P(sol) polarization free energy of solvation -76.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds