Wall clock time and date at job start Tue Mar 31 2020 11:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35319 * 126.13117 * 2 1 4 4 C 1.39867 * 107.92152 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.89664 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47303 * 324.99541 * 5 4 3 7 7 C 1.53001 * 109.47491 * 84.99375 * 5 4 3 8 8 N 1.46903 * 109.47113 * 204.99772 * 5 4 3 9 9 C 1.46896 * 110.99987 * 155.00087 * 8 5 4 10 10 C 1.50701 * 109.47050 * 179.97438 * 9 8 5 11 11 C 1.38302 * 119.93101 * 89.99407 * 10 9 8 12 12 C 1.38105 * 120.06695 * 180.02562 * 11 10 9 13 13 C 1.38871 * 119.93200 * 359.97438 * 12 11 10 14 14 O 1.35753 * 120.07178 * 180.02562 * 13 12 11 15 15 C 1.34831 * 116.99766 * 354.46580 * 14 13 12 16 16 H 1.08005 * 119.99910 * 5.05947 * 15 14 13 17 17 C 1.38653 * 120.00325 * 185.05796 * 15 14 13 18 18 N 1.31555 * 119.99726 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00359 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47111 * 59.99485 * 19 17 15 21 21 H 1.48495 * 109.47007 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47035 * 299.99958 * 19 17 15 23 23 C 1.38880 * 119.86456 * 0.27348 * 13 12 11 24 24 C 1.38102 * 119.92774 * 359.49328 * 23 13 12 25 25 N 1.30833 * 108.20512 * 0.25761 * 4 3 2 26 26 N 1.34945 * 126.12814 * 180.02562 * 2 1 3 27 27 C 1.46505 * 126.03446 * 359.97165 * 26 2 1 28 28 H 1.09005 * 109.47286 * 89.97725 * 1 2 3 29 29 H 1.08991 * 109.47653 * 209.98133 * 1 2 3 30 30 H 1.09000 * 109.47107 * 329.98600 * 1 2 3 31 31 H 1.08004 * 126.03424 * 0.05088 * 3 2 1 32 32 H 1.09000 * 109.46961 * 179.97438 * 7 5 4 33 33 H 1.09003 * 109.47094 * 300.00086 * 7 5 4 34 34 H 1.08999 * 109.46850 * 60.00097 * 7 5 4 35 35 H 1.00895 * 111.00134 * 31.04257 * 8 5 4 36 36 H 1.08992 * 109.47420 * 59.99615 * 9 8 5 37 37 H 1.09000 * 109.46921 * 299.99445 * 9 8 5 38 38 H 1.08001 * 119.96675 * 0.02562 * 11 10 9 39 39 H 1.07996 * 120.03107 * 179.97438 * 12 11 10 40 40 H 0.97003 * 120.00171 * 179.97438 * 18 17 15 41 41 H 1.08001 * 120.03810 * 179.72208 * 23 13 12 42 42 H 1.07994 * 119.96815 * 180.22560 * 24 23 13 43 43 H 1.09005 * 109.47284 * 89.99975 * 27 26 2 44 44 H 1.08994 * 109.46928 * 209.99638 * 27 26 2 45 45 H 1.08993 * 109.47156 * 329.99929 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6334 0.6559 -0.0006 5 6 4.8543 1.5394 -0.0003 6 1 4.6550 2.4348 -0.5891 7 6 5.1940 1.9394 1.4369 8 7 5.9868 0.8100 -0.5863 9 6 6.9781 1.7385 -1.1458 10 6 8.1226 0.9556 -1.7360 11 6 8.0804 0.5652 -3.0621 12 6 9.1275 -0.1528 -3.6057 13 6 10.2237 -0.4823 -2.8194 14 8 11.2547 -1.1875 -3.3509 15 6 11.1029 -1.6363 -4.6133 16 1 10.2274 -1.3608 -5.1826 17 6 12.0706 -2.4513 -5.1805 18 7 13.1372 -2.7863 -4.4871 19 14 11.8606 -3.0724 -6.9296 20 1 11.7753 -1.9168 -7.8584 21 1 13.0239 -3.9189 -7.2973 22 1 10.6151 -3.8757 -7.0234 23 6 10.2608 -0.0933 -1.4867 24 6 9.2128 0.6287 -0.9502 25 7 3.6333 -0.6525 -0.0065 26 7 2.3025 -1.0900 -0.0005 27 6 1.8538 -2.4846 -0.0005 28 1 -0.3634 0.0004 -1.0277 29 1 -0.3634 -0.8900 0.5135 30 1 -0.3633 0.8899 0.5141 31 1 1.9740 2.1211 0.0008 32 1 6.0773 2.5781 1.4371 33 1 4.3537 2.4807 1.8717 34 1 5.3933 1.0441 2.0258 35 1 5.6716 0.1535 -1.2846 36 1 7.3527 2.3894 -0.3559 37 1 6.5114 2.3427 -1.9238 38 1 7.2278 0.8221 -3.6732 39 1 9.0937 -0.4577 -4.6411 40 1 13.8141 -3.3568 -4.8838 41 1 11.1099 -0.3519 -0.8714 42 1 9.2426 0.9346 0.0850 43 1 1.7421 -2.8303 -1.0282 44 1 2.5899 -3.1031 0.5128 45 1 0.8956 -2.5579 0.5137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282166279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:25 Heat of formation + Delta-G solvation = 73.540412 kcal Electronic energy + Delta-G solvation = -24857.262489 eV Core-core repulsion = 21263.135950 eV Total energy + Delta-G solvation = -3594.126539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.46281 -39.01057 -37.34707 -36.06130 -33.46467 -32.26258 -32.23332 -30.98632 -30.07066 -28.46966 -27.22207 -26.77119 -25.50842 -24.26524 -22.38275 -21.87072 -20.59121 -20.22361 -19.09715 -17.91126 -17.04607 -16.74452 -15.91407 -15.66978 -15.05200 -14.70419 -14.51154 -14.31592 -14.12455 -13.91325 -13.59586 -13.53301 -13.42547 -13.36926 -12.80718 -12.70586 -12.62290 -12.51476 -12.39735 -12.26943 -11.86752 -11.82104 -11.58085 -11.21758 -11.07589 -10.75778 -10.63372 -10.59053 -10.44880 -10.37047 -9.27417 -9.24020 -8.78353 -8.65452 -8.24031 -8.07856 -7.10695 -6.40053 -3.98779 1.69829 2.31075 2.32200 2.36564 2.62439 3.15644 3.16993 3.19628 4.00664 4.16752 4.24658 4.43981 4.66193 4.72338 4.78870 4.88435 5.08269 5.12120 5.14939 5.16481 5.29794 5.37141 5.39859 5.44993 5.48801 5.55436 5.57204 5.73781 5.81616 5.82951 5.89370 5.97396 6.04615 6.25088 6.29905 6.50031 6.51096 6.79226 6.84286 6.98335 7.09525 7.18726 7.34805 7.43900 7.50690 7.57194 7.71427 7.91370 8.05202 9.05563 9.76945 10.78094 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.002443 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.493636 B =11460.490269 C =12512.893769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.077 3.923 3 C -0.269 4.269 4 C 0.073 3.927 5 C 0.165 3.835 6 H 0.059 0.941 7 C -0.132 4.132 8 N -0.674 5.674 9 C 0.117 3.883 10 C -0.181 4.181 11 C -0.066 4.066 12 C -0.234 4.234 13 C 0.156 3.844 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.194 4.194 24 C -0.051 4.051 25 N -0.268 5.268 26 N -0.376 5.376 27 C 0.100 3.900 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.348 0.652 36 H 0.072 0.928 37 H 0.027 0.973 38 H 0.102 0.898 39 H 0.125 0.875 40 H 0.270 0.730 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.051 6.878 8.969 27.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C -0.299 4.299 4 C -0.094 4.094 5 C 0.053 3.947 6 H 0.077 0.923 7 C -0.191 4.191 8 N -0.307 5.307 9 C -0.011 4.011 10 C -0.183 4.183 11 C -0.085 4.085 12 C -0.254 4.254 13 C 0.102 3.898 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.196 1.196 23 C -0.214 4.214 24 C -0.070 4.070 25 N -0.089 5.089 26 N -0.159 5.159 27 C -0.041 4.041 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.162 0.838 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.168 0.832 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.120 0.880 39 H 0.143 0.857 40 H 0.080 0.920 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.622 5.372 9.607 26.061 hybrid contribution -1.169 0.533 -1.774 2.190 sum -24.791 5.904 7.834 26.662 Atomic orbital electron populations 1.20428 0.87506 1.03675 1.03243 1.21058 0.94563 0.87448 1.01985 1.21043 0.91581 0.98930 1.18370 1.22335 0.95239 0.91873 0.99982 1.19921 0.85031 0.92461 0.97254 0.92334 1.21743 1.00994 1.01700 0.94653 1.60583 1.12606 1.18001 1.39489 1.20701 0.90929 0.92909 0.96591 1.19103 0.96983 1.07907 0.94259 1.20586 0.96957 0.96641 0.94268 1.21100 0.96194 1.06966 1.01121 1.19398 0.87498 0.90786 0.92134 1.83980 1.34218 1.60108 1.29933 1.21266 1.08178 1.30118 0.87187 0.89212 1.25274 0.94999 0.96202 1.00066 1.70031 1.08765 1.34016 1.37083 0.85795 0.78193 0.78963 0.80548 1.19552 1.20299 1.19559 1.20225 1.01134 1.06621 0.93383 1.20464 0.92437 0.96062 0.98001 1.77522 0.95326 1.12187 1.23910 1.48548 1.04069 1.05934 1.57364 1.21826 1.00839 0.78059 1.03386 0.90274 0.91263 0.89718 0.83771 0.91916 0.92639 0.91799 0.83215 0.90981 0.95497 0.88035 0.85734 0.92033 0.86596 0.87012 0.90758 0.89091 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 10.12 36.00 0.36 -0.10 16 2 C 0.08 0.73 6.93 -82.27 -0.57 0.16 16 3 C -0.27 -2.88 10.65 -40.01 -0.43 -3.31 16 4 C 0.07 0.93 5.96 -82.41 -0.49 0.44 16 5 C 0.17 1.99 3.09 -68.86 -0.21 1.77 16 6 H 0.06 0.64 7.80 -51.92 -0.40 0.23 16 7 C -0.13 -1.43 9.40 37.16 0.35 -1.08 16 8 N -0.67 -9.70 6.19 -109.22 -0.68 -10.37 16 9 C 0.12 1.67 5.61 -4.98 -0.03 1.64 16 10 C -0.18 -3.24 5.40 -104.57 -0.56 -3.80 16 11 C -0.07 -1.26 9.69 -39.61 -0.38 -1.64 16 12 C -0.23 -5.29 9.17 -39.40 -0.36 -5.65 16 13 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 14 O -0.18 -5.25 9.76 0.04 0.00 -5.25 16 15 C -0.39 -11.20 9.49 30.89 0.29 -10.91 16 16 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -25.82 13.67 55.48 0.76 -25.07 16 19 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 C -0.19 -4.30 9.99 -39.39 -0.39 -4.69 16 24 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 25 N -0.27 -3.83 12.04 33.67 0.41 -3.43 16 26 N -0.38 -4.18 4.01 -63.89 -0.26 -4.44 16 27 C 0.10 0.71 11.27 59.85 0.67 1.38 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.26 7.08 -51.93 -0.37 -0.10 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 32 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.35 5.49 8.04 -39.29 -0.32 5.18 16 36 H 0.07 0.95 7.38 -51.93 -0.38 0.57 16 37 H 0.03 0.36 8.00 -51.93 -0.42 -0.06 16 38 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.12 2.81 5.64 -52.49 -0.30 2.51 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 42 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.34 7.05 -51.93 -0.37 -0.02 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -33.95 378.18 -8.16 -42.10 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.57 Total: 7.33 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -2.49 Total: -22.50 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.23 Total: -43.30 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.00 Total: -5.25 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.95 -8.16 -42.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282166279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.644 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds