Wall clock time and date at job start Tue Mar 31 2020 11:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35319 * 126.13117 * 2 1 4 4 C 1.39867 * 107.92152 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.89664 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47303 * 324.99541 * 5 4 3 7 7 C 1.53001 * 109.47491 * 84.99375 * 5 4 3 8 8 N 1.46903 * 109.47113 * 204.99772 * 5 4 3 9 9 C 1.46896 * 110.99987 * 155.00087 * 8 5 4 10 10 C 1.50701 * 109.47050 * 179.97438 * 9 8 5 11 11 C 1.38302 * 119.93101 * 89.99407 * 10 9 8 12 12 C 1.38105 * 120.06695 * 180.02562 * 11 10 9 13 13 C 1.38871 * 119.93200 * 359.97438 * 12 11 10 14 14 O 1.35753 * 120.07178 * 180.02562 * 13 12 11 15 15 C 1.34831 * 116.99766 * 354.46580 * 14 13 12 16 16 H 1.08005 * 119.99910 * 5.05947 * 15 14 13 17 17 C 1.38653 * 120.00325 * 185.05796 * 15 14 13 18 18 N 1.31555 * 119.99726 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00359 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47111 * 59.99485 * 19 17 15 21 21 H 1.48495 * 109.47007 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47035 * 299.99958 * 19 17 15 23 23 C 1.38880 * 119.86456 * 0.27348 * 13 12 11 24 24 C 1.38102 * 119.92774 * 359.49328 * 23 13 12 25 25 N 1.30833 * 108.20512 * 0.25761 * 4 3 2 26 26 N 1.34945 * 126.12814 * 180.02562 * 2 1 3 27 27 C 1.46505 * 126.03446 * 359.97165 * 26 2 1 28 28 H 1.09005 * 109.47286 * 89.97725 * 1 2 3 29 29 H 1.08991 * 109.47653 * 209.98133 * 1 2 3 30 30 H 1.09000 * 109.47107 * 329.98600 * 1 2 3 31 31 H 1.08004 * 126.03424 * 0.05088 * 3 2 1 32 32 H 1.09000 * 109.46961 * 179.97438 * 7 5 4 33 33 H 1.09003 * 109.47094 * 300.00086 * 7 5 4 34 34 H 1.08999 * 109.46850 * 60.00097 * 7 5 4 35 35 H 1.00895 * 111.00134 * 31.04257 * 8 5 4 36 36 H 1.08992 * 109.47420 * 59.99615 * 9 8 5 37 37 H 1.09000 * 109.46921 * 299.99445 * 9 8 5 38 38 H 1.08001 * 119.96675 * 0.02562 * 11 10 9 39 39 H 1.07996 * 120.03107 * 179.97438 * 12 11 10 40 40 H 0.97003 * 120.00171 * 179.97438 * 18 17 15 41 41 H 1.08001 * 120.03810 * 179.72208 * 23 13 12 42 42 H 1.07994 * 119.96815 * 180.22560 * 24 23 13 43 43 H 1.09005 * 109.47284 * 89.99975 * 27 26 2 44 44 H 1.08994 * 109.46928 * 209.99638 * 27 26 2 45 45 H 1.08993 * 109.47156 * 329.99929 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6334 0.6559 -0.0006 5 6 4.8543 1.5394 -0.0003 6 1 4.6550 2.4348 -0.5891 7 6 5.1940 1.9394 1.4369 8 7 5.9868 0.8100 -0.5863 9 6 6.9781 1.7385 -1.1458 10 6 8.1226 0.9556 -1.7360 11 6 8.0804 0.5652 -3.0621 12 6 9.1275 -0.1528 -3.6057 13 6 10.2237 -0.4823 -2.8194 14 8 11.2547 -1.1875 -3.3509 15 6 11.1029 -1.6363 -4.6133 16 1 10.2274 -1.3608 -5.1826 17 6 12.0706 -2.4513 -5.1805 18 7 13.1372 -2.7863 -4.4871 19 14 11.8606 -3.0724 -6.9296 20 1 11.7753 -1.9168 -7.8584 21 1 13.0239 -3.9189 -7.2973 22 1 10.6151 -3.8757 -7.0234 23 6 10.2608 -0.0933 -1.4867 24 6 9.2128 0.6287 -0.9502 25 7 3.6333 -0.6525 -0.0065 26 7 2.3025 -1.0900 -0.0005 27 6 1.8538 -2.4846 -0.0005 28 1 -0.3634 0.0004 -1.0277 29 1 -0.3634 -0.8900 0.5135 30 1 -0.3633 0.8899 0.5141 31 1 1.9740 2.1211 0.0008 32 1 6.0773 2.5781 1.4371 33 1 4.3537 2.4807 1.8717 34 1 5.3933 1.0441 2.0258 35 1 5.6716 0.1535 -1.2846 36 1 7.3527 2.3894 -0.3559 37 1 6.5114 2.3427 -1.9238 38 1 7.2278 0.8221 -3.6732 39 1 9.0937 -0.4577 -4.6411 40 1 13.8141 -3.3568 -4.8838 41 1 11.1099 -0.3519 -0.8714 42 1 9.2426 0.9346 0.0850 43 1 1.7421 -2.8303 -1.0282 44 1 2.5899 -3.1031 0.5128 45 1 0.8956 -2.5579 0.5137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282166279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:24 Heat of formation + Delta-G solvation = 50.975777 kcal Electronic energy + Delta-G solvation = -24858.240965 eV Core-core repulsion = 21263.135950 eV Total energy + Delta-G solvation = -3595.105015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.23021 -40.78526 -38.81124 -37.41322 -34.53916 -34.10342 -32.84160 -32.18687 -31.75226 -29.80415 -27.87140 -27.56005 -27.35860 -25.59237 -23.60242 -23.37772 -21.92850 -21.21841 -19.96765 -19.79632 -18.85188 -17.61295 -16.85418 -16.60224 -16.42806 -16.31019 -15.91862 -15.62730 -15.46587 -15.22268 -15.01198 -14.69963 -14.37941 -14.21817 -13.99874 -13.85081 -13.67272 -13.49862 -13.32059 -13.27487 -13.01849 -12.96289 -12.81941 -12.62600 -12.39273 -12.31330 -12.15885 -11.97996 -11.95351 -11.42034 -11.17440 -10.78865 -10.04377 -9.76696 -9.42509 -9.29435 -8.89373 -8.47083 -6.15433 0.61477 0.68643 0.95548 1.33505 1.44679 1.50228 1.66421 1.81498 2.17569 2.77971 3.08938 3.40488 3.53471 3.54643 3.83900 4.00073 4.06094 4.08333 4.21480 4.30952 4.33861 4.39888 4.45318 4.55467 4.63107 4.63502 4.72385 4.76347 4.77333 4.81876 4.84694 4.99631 5.00500 5.08784 5.10878 5.15178 5.28055 5.31627 5.39837 5.58656 5.70785 5.71648 5.82881 6.02850 6.13459 6.20928 6.26720 6.40570 6.86213 6.97227 7.78736 8.76096 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.002443 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.493636 B =11460.490269 C =12512.893769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.081 3.919 3 C -0.288 4.288 4 C 0.060 3.940 5 C 0.166 3.834 6 H 0.076 0.924 7 C -0.126 4.126 8 N -0.685 5.685 9 C 0.121 3.879 10 C -0.156 4.156 11 C -0.064 4.064 12 C -0.243 4.243 13 C 0.113 3.887 14 O -0.233 6.233 15 C -0.415 4.415 16 H 0.100 0.900 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.019 2.981 20 H -0.256 1.256 21 H -0.270 1.270 22 H -0.259 1.259 23 C -0.206 4.206 24 C -0.046 4.046 25 N -0.322 5.322 26 N -0.385 5.385 27 C 0.092 3.908 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.164 0.836 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.339 0.661 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.134 0.866 39 H 0.117 0.883 40 H 0.273 0.727 41 H 0.112 0.888 42 H 0.145 0.855 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.002 8.555 9.103 31.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C -0.318 4.318 4 C -0.107 4.107 5 C 0.055 3.945 6 H 0.094 0.906 7 C -0.185 4.185 8 N -0.317 5.317 9 C -0.007 4.007 10 C -0.157 4.157 11 C -0.082 4.082 12 C -0.262 4.262 13 C 0.063 3.937 14 O -0.140 6.140 15 C -0.491 4.491 16 H 0.117 0.883 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.838 3.162 20 H -0.181 1.181 21 H -0.195 1.195 22 H -0.183 1.183 23 C -0.225 4.225 24 C -0.065 4.065 25 N -0.145 5.145 26 N -0.168 5.168 27 C -0.048 4.048 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.181 0.819 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.157 0.843 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.152 0.848 39 H 0.135 0.865 40 H 0.082 0.918 41 H 0.130 0.870 42 H 0.162 0.838 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -27.620 7.087 9.778 30.144 hybrid contribution -0.232 0.171 -1.576 1.602 sum -27.852 7.258 8.202 29.927 Atomic orbital electron populations 1.20584 0.84289 1.05271 1.04417 1.21768 0.96467 0.86673 0.99815 1.21363 0.90903 1.00320 1.19175 1.22553 0.96301 0.91747 1.00052 1.20013 0.84086 0.92611 0.97768 0.90591 1.21704 1.02131 1.00967 0.93692 1.60538 1.13798 1.18293 1.39108 1.20726 0.89686 0.92518 0.97751 1.19625 0.97342 1.05209 0.93523 1.20932 0.96676 0.95358 0.95284 1.21205 0.96580 1.07654 1.00797 1.19934 0.88151 0.91940 0.93674 1.83942 1.36649 1.62724 1.30642 1.21775 1.08946 1.30746 0.87620 0.88274 1.26610 0.94321 0.96051 1.05150 1.70183 1.10215 1.35861 1.39673 0.84646 0.78641 0.78712 0.74186 1.18056 1.19474 1.18320 1.20476 1.02281 1.07249 0.92537 1.20851 0.91421 0.94623 0.99587 1.77415 0.97709 1.13246 1.26084 1.48852 1.03426 1.07469 1.57025 1.22107 1.02045 0.76425 1.04264 0.89125 0.89593 0.88232 0.81888 0.91015 0.90886 0.93992 0.84315 0.88984 0.93549 0.84805 0.86488 0.91828 0.86998 0.83757 0.90048 0.89958 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.12 71.23 0.72 0.13 16 2 C 0.08 1.35 6.93 41.40 0.29 1.64 16 3 C -0.29 -5.50 10.65 21.99 0.23 -5.26 16 4 C 0.06 1.43 5.96 43.10 0.26 1.69 16 5 C 0.17 3.58 3.09 44.17 0.14 3.72 16 6 H 0.08 1.38 7.80 -2.38 -0.02 1.36 16 7 C -0.13 -2.42 9.40 71.98 0.68 -1.74 16 8 N -0.69 -18.06 6.19 -499.46 -3.09 -21.15 16 9 C 0.12 3.01 5.61 85.56 0.48 3.49 16 10 C -0.16 -5.18 5.40 -19.83 -0.11 -5.29 16 11 C -0.06 -2.34 9.69 22.25 0.22 -2.12 16 12 C -0.24 -11.15 9.17 22.39 0.21 -10.95 16 13 C 0.11 5.94 6.65 22.58 0.15 6.09 16 14 O -0.23 -14.58 9.76 -22.78 -0.22 -14.81 16 15 C -0.41 -25.00 9.49 67.92 0.64 -24.36 16 16 H 0.10 5.50 5.20 -2.91 -0.02 5.48 16 17 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 18 N -0.92 -58.00 13.67 21.61 0.30 -57.70 16 19 Si 1.02 44.02 29.55 68.60 2.03 46.05 16 20 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 C -0.21 -9.34 9.99 22.39 0.22 -9.12 16 24 C -0.05 -1.68 9.69 22.25 0.22 -1.46 16 25 N -0.32 -8.98 12.04 -47.39 -0.57 -9.55 16 26 N -0.38 -7.99 4.01 -356.04 -1.43 -9.42 16 27 C 0.09 1.15 11.27 127.77 1.44 2.59 16 28 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.09 0.31 7.08 -2.39 -0.02 0.30 16 30 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.07 1.22 7.45 -2.39 -0.02 1.20 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.34 10.12 8.04 -89.70 -0.72 9.40 16 36 H 0.09 1.99 7.38 -2.39 -0.02 1.98 16 37 H 0.05 1.02 8.00 -2.39 -0.02 1.00 16 38 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.12 5.44 5.64 -2.91 -0.02 5.42 16 40 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 41 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 42 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.12 0.63 7.05 -2.39 -0.02 0.61 16 Total: -1.00 -79.81 378.18 3.53 -76.28 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.28 Total: 32.21 kcal Atomic # 6 Polarization: -48.15 SS G_CDS: 6.25 Total: -41.90 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -4.80 Total: -97.82 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.22 Total: -14.81 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -79.81 3.53 -76.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282166279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.251 kcal (2) G-P(sol) polarization free energy of solvation -79.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds