Wall clock time and date at job start Tue Mar 31 2020 11:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 126.03791 * 2 1 4 4 N 1.30838 * 108.20062 * 180.02562 * 3 2 1 5 5 N 1.40085 * 108.20433 * 359.77414 * 4 3 2 6 6 C 1.46499 * 126.03515 * 180.23489 * 5 4 3 7 7 C 1.34945 * 107.92737 * 0.37009 * 5 4 3 8 8 C 1.50703 * 126.12986 * 179.90201 * 7 5 4 9 9 N 1.46502 * 109.47002 * 89.68776 * 8 7 5 10 10 C 1.39663 * 119.99806 * 180.02562 * 9 8 7 11 11 C 1.38973 * 120.04649 * 0.02562 * 10 9 8 12 12 C 1.38116 * 120.03003 * 179.97438 * 11 10 9 13 13 C 1.38216 * 120.13578 * 359.74695 * 12 11 10 14 14 C 1.38779 * 120.08401 * 0.51068 * 13 12 11 15 15 O 1.35897 * 120.00949 * 179.76812 * 14 13 12 16 16 C 1.42898 * 117.00481 * 359.71829 * 15 14 13 17 17 C 1.52997 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46838 * 89.99826 * 22 20 18 24 24 H 1.48497 * 109.47419 * 209.99978 * 22 20 18 25 25 H 1.48499 * 109.47011 * 330.00539 * 22 20 18 26 26 C 1.38609 * 119.96517 * 359.48769 * 14 13 12 27 27 H 1.09001 * 109.47036 * 269.97841 * 1 2 3 28 28 H 1.08997 * 109.47334 * 29.97717 * 1 2 3 29 29 H 1.09000 * 109.47338 * 149.97792 * 1 2 3 30 30 H 1.08000 * 125.90177 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47021 * 270.15327 * 6 5 4 32 32 H 1.08993 * 109.47514 * 30.15609 * 6 5 4 33 33 H 1.09002 * 109.47041 * 150.15980 * 6 5 4 34 34 H 1.09001 * 109.46841 * 329.68897 * 8 7 5 35 35 H 1.09000 * 109.46773 * 209.68541 * 8 7 5 36 36 H 0.97001 * 119.99801 * 359.97438 * 9 8 7 37 37 H 1.07996 * 119.98294 * 0.02562 * 11 10 9 38 38 H 1.08007 * 119.92769 * 180.02562 * 12 11 10 39 39 H 1.07991 * 119.95689 * 180.26971 * 13 12 11 40 40 H 1.09002 * 109.47259 * 300.00417 * 16 15 14 41 41 H 1.09001 * 109.47074 * 60.00439 * 16 15 14 42 42 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 43 43 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 44 44 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 45 45 H 1.08006 * 120.06150 * 180.23058 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 -0.0006 5 7 3.5844 -0.6706 0.0043 6 6 4.7745 -1.5248 0.0103 7 6 2.3031 -1.0942 -0.0005 8 6 1.8416 -2.5288 0.0001 9 7 1.6932 -2.9934 1.3816 10 6 1.2733 -4.3007 1.6373 11 6 0.9966 -5.1617 0.5821 12 6 0.5820 -6.4545 0.8354 13 6 0.4462 -6.8971 2.1377 14 6 0.7160 -6.0401 3.1954 15 8 0.5774 -6.4755 4.4753 16 6 0.1444 -7.8249 4.6583 17 6 0.0469 -8.1308 6.1543 18 6 -0.4090 -9.5541 6.3474 19 1 -0.6089 -10.1783 5.4889 20 6 -0.5701 -10.0598 7.6199 21 7 -0.3263 -9.2999 8.6652 22 14 -1.1360 -11.8239 7.8592 23 1 0.0472 -12.7191 7.9213 24 1 -1.9040 -11.9299 9.1258 25 1 -2.0009 -12.2251 6.7207 26 6 1.1324 -4.7419 2.9456 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8901 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 1.9951 2.1578 -0.0004 31 1 5.0739 -1.7379 -1.0159 32 1 5.5865 -1.0130 0.5268 33 1 4.5486 -2.4591 0.5243 34 1 2.5771 -3.1473 -0.5142 35 1 0.8826 -2.6021 -0.5129 36 1 1.8872 -2.3933 2.1186 37 1 1.1067 -4.8199 -0.4364 38 1 0.3678 -7.1224 0.0140 39 1 0.1260 -7.9099 2.3324 40 1 -0.8336 -7.9587 4.1960 41 1 0.8613 -8.5026 4.1946 42 1 1.0247 -7.9969 6.6170 43 1 -0.6701 -7.4532 6.6177 44 1 -0.4393 -9.6558 9.5605 45 1 1.3463 -4.0747 3.7676 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285469656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:49 Heat of formation + Delta-G solvation = 56.439107 kcal Electronic energy + Delta-G solvation = -24612.343806 eV Core-core repulsion = 21017.475699 eV Total energy + Delta-G solvation = -3594.868107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75054 -39.77201 -37.82775 -35.38348 -34.07712 -33.35214 -32.33347 -30.86657 -29.86378 -28.98150 -28.10239 -26.21072 -25.38169 -24.80111 -22.63980 -21.71156 -21.22545 -20.37195 -19.77043 -18.09187 -17.15569 -16.39149 -16.12359 -15.92194 -15.52408 -15.30041 -15.27071 -14.90088 -14.66757 -14.37333 -14.20514 -13.66989 -13.54392 -13.44915 -13.26896 -12.73066 -12.68265 -12.60011 -12.54989 -12.31784 -12.06955 -11.60752 -11.56693 -11.24677 -10.96057 -10.90396 -10.75406 -10.45575 -10.07652 -9.76054 -9.75055 -9.64009 -9.28858 -8.67709 -8.44553 -7.99004 -7.42465 -6.09658 -4.14127 1.31878 1.66693 1.81398 2.10263 2.35621 3.27759 3.28803 3.34132 3.37203 3.99203 4.04007 4.06854 4.15844 4.42680 4.59434 4.75655 4.85090 4.91351 4.98594 5.03646 5.08896 5.14223 5.26741 5.28999 5.45804 5.50428 5.51929 5.53358 5.73421 5.75201 5.83513 6.06063 6.07078 6.07438 6.28728 6.32940 6.55693 6.60061 6.64003 6.70058 6.85111 7.27592 7.30629 7.49938 7.56541 7.65523 7.83520 8.10272 8.25215 8.91561 9.50059 11.01932 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.027558 B = 0.001968 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.809974 B =14226.074684 C =14405.897502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.217 4.217 3 C 0.046 3.954 4 N -0.289 5.289 5 N -0.364 5.364 6 C 0.097 3.903 7 C 0.062 3.938 8 C 0.196 3.804 9 N -0.745 5.745 10 C 0.246 3.754 11 C -0.244 4.244 12 C -0.036 4.036 13 C -0.262 4.262 14 C 0.188 3.812 15 O -0.316 6.316 16 C 0.066 3.934 17 C 0.025 3.975 18 C -0.525 4.525 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.235 4.235 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.184 0.816 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.401 0.599 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.263 0.737 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.513 17.445 -21.503 28.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.230 4.230 3 C -0.139 4.139 4 N -0.111 5.111 5 N -0.147 5.147 6 C -0.044 4.044 7 C -0.065 4.065 8 C 0.070 3.930 9 N -0.377 5.377 10 C 0.144 3.856 11 C -0.267 4.267 12 C -0.055 4.055 13 C -0.282 4.282 14 C 0.140 3.860 15 O -0.229 6.229 16 C -0.008 4.008 17 C -0.012 4.012 18 C -0.564 4.564 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.528 5.528 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.258 4.258 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.201 0.799 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.236 0.764 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.925 17.825 -21.316 28.637 hybrid contribution -0.983 -1.109 0.362 1.526 sum 5.942 16.716 -20.954 27.455 Atomic orbital electron populations 1.20123 0.88914 1.02256 1.02040 1.19991 0.97229 0.91205 1.14528 1.23806 0.89830 0.99893 1.00385 1.77384 1.21331 0.88421 1.23918 1.48430 1.05121 1.04686 1.56463 1.21925 0.85479 0.93490 1.03554 1.20759 0.84959 0.96159 1.04673 1.19642 1.01229 0.86872 0.85236 1.44482 1.76232 1.11040 1.05990 1.17291 0.91813 0.83852 0.92625 1.20369 1.14090 0.95093 0.97129 1.20621 0.94427 0.94586 0.95857 1.21176 1.13070 1.01229 0.92731 1.18820 0.90630 0.92121 0.84401 1.86152 1.81102 1.33066 1.22536 1.23324 0.97496 0.77588 1.02370 1.19128 0.98625 0.96838 0.86656 1.20974 1.46442 0.96513 0.92443 0.92340 1.24999 0.95280 0.98080 0.95906 1.69980 1.48423 1.36139 0.98245 0.86483 0.78789 0.84385 0.77702 1.20516 1.21067 1.19749 1.19655 1.15342 0.95753 0.95026 0.91699 0.91724 0.91915 0.79885 0.90569 0.89049 0.89112 0.91301 0.89639 0.76429 0.86710 0.86272 0.85511 0.93041 0.93069 0.95454 0.95413 0.92726 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.15 36.01 0.37 -0.14 16 2 C -0.22 -1.87 6.10 -105.05 -0.64 -2.51 16 3 C 0.05 0.41 11.96 -17.37 -0.21 0.20 16 4 N -0.29 -3.08 12.58 30.62 0.39 -2.69 16 5 N -0.36 -3.32 4.01 -63.89 -0.26 -3.58 16 6 C 0.10 0.59 11.10 59.85 0.66 1.25 16 7 C 0.06 0.53 6.30 -82.26 -0.52 0.02 16 8 C 0.20 1.51 4.70 -5.19 -0.02 1.48 16 9 N -0.75 -7.10 5.72 -59.82 -0.34 -7.44 16 10 C 0.25 3.03 6.65 -83.81 -0.56 2.47 16 11 C -0.24 -2.86 9.31 -39.35 -0.37 -3.22 16 12 C -0.04 -0.46 10.03 -39.63 -0.40 -0.86 16 13 C -0.26 -4.09 9.04 -39.39 -0.36 -4.45 16 14 C 0.19 3.30 6.68 -39.24 -0.26 3.04 16 15 O -0.32 -6.56 10.13 -19.42 -0.20 -6.76 16 16 C 0.07 1.43 4.68 37.16 0.17 1.60 16 17 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 18 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 22 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 26 C -0.23 -3.54 9.83 -39.24 -0.39 -3.92 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.41 7.15 -51.93 -0.37 0.03 16 30 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.49 7.66 -51.93 -0.40 0.09 16 34 H 0.07 0.47 7.54 -51.93 -0.39 0.08 16 35 H 0.09 0.61 6.95 -51.93 -0.36 0.25 16 36 H 0.40 3.81 8.47 -40.82 -0.35 3.46 16 37 H 0.11 1.06 6.73 -52.49 -0.35 0.71 16 38 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 39 H 0.13 1.98 6.29 -52.49 -0.33 1.65 16 40 H 0.05 1.06 7.67 -51.93 -0.40 0.66 16 41 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -32.48 378.23 -8.76 -41.24 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.69 Total: 1.00 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -3.07 Total: -17.93 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.52 Total: -39.50 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.20 Total: -6.76 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.48 -8.76 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285469656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.680 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds