Wall clock time and date at job start Tue Mar 31 2020 11:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 110.96478 * 2 1 4 4 C 1.56085 * 111.06651 * 124.06292 * 2 1 3 5 5 N 1.49325 * 106.55077 * 94.19892 * 4 2 1 6 6 S 1.65601 * 127.10785 * 172.78714 * 5 4 2 7 7 O 1.42099 * 104.27924 * 333.95343 * 6 5 4 8 8 O 1.42112 * 104.27448 * 206.09842 * 6 5 4 9 9 C 1.81402 * 104.45065 * 90.02771 * 6 5 4 10 10 C 1.52997 * 109.46890 * 179.97438 * 9 6 5 11 11 C 1.53004 * 109.47000 * 180.02562 * 10 9 6 12 12 C 1.50701 * 109.47211 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 C 1.41768 * 105.77349 * 353.05068 * 5 4 2 21 21 H 1.08999 * 105.74805 * 286.41370 * 20 5 4 22 22 C 1.49037 * 131.52348 * 158.35646 * 20 5 4 23 23 C 1.55882 * 104.21353 * 202.96745 * 22 20 5 24 24 C 1.55863 * 105.86783 * 4.75836 * 23 22 20 25 25 C 1.52569 * 102.25080 * 25.89403 * 24 23 22 26 26 H 1.09001 * 112.90614 * 75.37826 * 25 24 23 27 27 H 1.08997 * 109.47283 * 297.39027 * 1 2 3 28 28 H 1.09001 * 109.47062 * 57.38879 * 1 2 3 29 29 H 1.09000 * 109.46763 * 177.39115 * 1 2 3 30 30 H 1.09004 * 109.47221 * 182.60738 * 3 2 1 31 31 H 1.08998 * 109.47621 * 302.60773 * 3 2 1 32 32 H 1.09004 * 109.47457 * 62.60943 * 3 2 1 33 33 H 1.08996 * 110.03974 * 334.92663 * 4 2 1 34 34 H 1.09000 * 110.03838 * 213.47441 * 4 2 1 35 35 H 1.08995 * 109.46864 * 59.99580 * 9 6 5 36 36 H 1.08998 * 109.46731 * 299.99965 * 9 6 5 37 37 H 1.09000 * 109.47849 * 59.99708 * 10 9 6 38 38 H 1.09007 * 109.47288 * 299.99302 * 10 9 6 39 39 H 1.09000 * 109.47211 * 59.99130 * 11 10 9 40 40 H 1.09007 * 109.46376 * 299.99672 * 11 10 9 41 41 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 42 42 H 1.09002 * 110.48186 * 321.65166 * 22 20 5 43 43 H 1.09008 * 110.48473 * 84.28686 * 22 20 5 44 44 H 1.09006 * 110.16691 * 124.26669 * 23 22 20 45 45 H 1.08993 * 110.16725 * 245.98301 * 23 22 20 46 46 H 1.09002 * 111.43939 * 267.48129 * 24 23 22 47 47 H 1.09005 * 110.38335 * 143.82976 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0775 1.4287 0.0000 4 6 2.0911 -0.8158 1.2066 5 7 2.3418 -2.1996 0.7047 6 16 3.0898 -3.4357 1.5139 7 8 3.9440 -2.7810 2.4417 8 8 3.6205 -4.2584 0.4838 9 6 1.7440 -4.2893 2.3805 10 6 2.3142 -5.4666 3.1739 11 6 1.1790 -6.1870 3.9043 12 6 1.7407 -7.3462 4.6863 13 1 2.8012 -7.5492 4.6643 14 6 0.8999 -8.1514 5.4250 15 7 -0.3916 -7.9044 5.4516 16 14 1.5951 -9.5931 6.3881 17 1 2.5800 -9.0956 7.3820 18 1 0.4926 -10.2951 7.0932 19 1 2.2653 -10.5345 5.4554 20 6 1.8126 -2.2345 -0.6101 21 1 0.7291 -2.2524 -0.4925 22 6 2.0981 -3.1301 -1.7666 23 6 1.6656 -2.2974 -3.0114 24 6 1.2619 -0.8942 -2.4661 25 6 2.0793 -0.7986 -1.1814 26 1 3.1351 -0.5989 -1.3642 27 1 -0.3634 0.4728 0.9124 28 1 -0.3633 0.5538 -0.8657 29 1 -0.3633 -1.0266 -0.0468 30 1 3.1661 1.4007 -0.0468 31 1 1.6904 1.9662 -0.8656 32 1 1.7660 1.9372 0.9125 33 1 1.3599 -0.8383 2.0146 34 1 3.0224 -0.3711 1.5573 35 1 1.0201 -4.6579 1.6537 36 1 1.2529 -3.5949 3.0622 37 1 3.0383 -5.0984 3.9006 38 1 2.8049 -6.1609 2.4917 39 1 0.4552 -6.5552 3.1772 40 1 0.6879 -5.4929 4.5864 41 1 -0.9832 -8.4711 5.9709 42 1 3.1617 -3.3636 -1.8147 43 1 1.5087 -4.0443 -1.6958 44 1 2.4959 -2.2105 -3.7123 45 1 0.8107 -2.7661 -3.4985 46 1 0.1946 -0.8424 -2.2508 47 1 1.5543 -0.1148 -3.1700 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331404742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:57 Heat of formation + Delta-G solvation = -79.797725 kcal Electronic energy + Delta-G solvation = -25617.846651 eV Core-core repulsion = 22120.222071 eV Total energy + Delta-G solvation = -3497.624579 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08507 -36.91390 -35.72070 -35.42428 -34.66425 -33.91402 -32.18175 -28.31453 -27.83240 -27.82231 -27.27720 -25.91163 -23.67301 -21.37176 -21.16985 -20.42974 -18.92207 -18.50203 -17.01870 -16.90718 -16.56639 -15.75981 -15.63596 -15.06972 -14.72025 -14.46218 -14.23668 -14.19680 -13.95983 -13.46868 -12.99136 -12.87952 -12.60635 -12.42277 -12.25715 -12.21008 -11.92626 -11.90336 -11.83666 -11.76204 -11.74627 -11.40254 -11.27153 -11.13977 -10.89625 -10.87231 -10.70140 -10.68241 -10.52242 -10.38694 -10.30481 -9.94778 -9.43816 -9.19242 -8.74917 -8.40444 -6.05489 -4.08752 0.42682 2.72116 3.32274 3.35973 3.39288 3.82150 4.01252 4.10105 4.36602 4.42553 4.49332 4.63109 4.73740 4.80863 4.98438 5.11016 5.13884 5.18773 5.21361 5.30445 5.31483 5.34671 5.39164 5.42961 5.49025 5.54010 5.60619 5.70068 5.74861 5.77385 5.81744 5.86803 5.89597 5.93798 6.11098 6.13093 6.20149 6.27825 6.30984 6.45046 6.62659 6.87337 7.56674 7.66814 7.92310 8.32810 8.97198 9.55891 11.05718 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022291 B = 0.003079 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.821981 B = 9091.761221 C = 9206.589748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.136 4.136 4 C 0.132 3.868 5 N -0.994 5.994 6 S 2.609 3.391 7 O -0.959 6.959 8 O -0.953 6.953 9 C -0.607 4.607 10 C -0.105 4.105 11 C 0.032 3.968 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.895 3.105 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.122 3.878 21 H 0.052 0.948 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.107 4.107 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.262 0.738 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.838 19.198 -16.230 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.193 4.193 4 C 0.008 3.992 5 N -0.828 5.828 6 S 2.707 3.293 7 O -0.950 6.950 8 O -0.944 6.944 9 C -0.739 4.739 10 C -0.145 4.145 11 C -0.007 4.007 12 C -0.565 4.565 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C 0.014 3.986 21 H 0.070 0.930 22 C -0.155 4.155 23 C -0.155 4.155 24 C -0.152 4.152 25 C -0.128 4.128 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.640 18.887 -16.106 24.876 hybrid contribution -0.460 -0.944 0.825 1.335 sum 1.180 17.943 -15.281 23.598 Atomic orbital electron populations 1.21926 0.93433 1.02443 1.02076 1.21319 0.95961 0.94895 0.94493 1.21758 1.00995 0.94508 1.02064 1.22692 1.00896 0.79623 0.96033 1.57702 1.77707 1.24529 1.22885 1.05164 0.76311 0.73407 0.74396 1.93551 1.62893 1.73552 1.64994 1.93562 1.76545 1.68414 1.55838 1.30578 1.18368 1.11888 1.13038 1.21505 1.01412 0.93288 0.98293 1.19056 0.92090 0.94691 0.94847 1.21220 0.94122 1.12391 1.28814 0.92411 1.25016 0.94834 0.97837 0.96647 1.69946 1.02884 1.39208 1.41416 0.86612 0.78567 0.82430 0.80165 1.20098 1.21229 1.20101 1.20240 0.98160 0.96768 0.83444 0.93022 1.21510 1.03787 0.97749 0.92416 1.22786 1.01170 0.94652 0.96916 1.22089 1.00053 0.97038 0.95984 1.22966 1.00328 0.95544 0.93937 0.89172 0.92183 0.92030 0.91737 0.92297 0.92137 0.92296 0.90986 0.90285 0.85526 0.85547 0.91630 0.91598 0.96130 0.96140 0.92833 0.89959 0.90718 0.91237 0.91393 0.90554 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 7.28 37.16 0.27 -0.74 16 2 C -0.07 -0.53 0.93 -152.95 -0.14 -0.67 16 3 C -0.14 -0.91 8.61 37.16 0.32 -0.59 16 4 C 0.13 1.37 6.30 -0.82 -0.01 1.36 16 5 N -0.99 -12.46 3.53 -106.35 -0.37 -12.84 16 6 S 2.61 41.33 5.69 -107.50 -0.61 40.72 16 7 O -0.96 -17.73 17.70 -57.54 -1.02 -18.75 16 8 O -0.95 -17.17 16.30 -57.54 -0.94 -18.11 16 9 C -0.61 -9.89 6.18 37.16 0.23 -9.66 16 10 C -0.11 -2.20 5.16 -26.73 -0.14 -2.34 16 11 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16 12 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 16 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.12 1.35 2.93 -70.28 -0.21 1.14 16 21 H 0.05 0.53 5.31 -51.93 -0.28 0.25 16 22 C -0.12 -1.26 5.81 -27.14 -0.16 -1.42 16 23 C -0.12 -0.93 6.93 -23.66 -0.16 -1.09 16 24 C -0.11 -0.82 6.06 -25.42 -0.15 -0.97 16 25 C -0.11 -0.95 2.85 -88.87 -0.25 -1.21 16 26 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.37 7.40 -51.93 -0.38 -0.01 16 29 H 0.06 0.51 6.02 -51.93 -0.31 0.19 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.66 7.91 -51.93 -0.41 0.25 16 34 H 0.08 0.84 7.88 -51.93 -0.41 0.43 16 35 H 0.13 1.88 8.14 -51.93 -0.42 1.45 16 36 H 0.13 1.86 8.14 -51.92 -0.42 1.44 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.08 1.03 7.55 -51.93 -0.39 0.63 16 43 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.51 6.29 -51.93 -0.33 0.18 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -33.90 372.48 -10.96 -44.86 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -8.39 Total: -2.88 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: -0.95 Total: -29.29 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.36 Total: -38.88 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -1.96 Total: -36.86 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 41.33 SS G_CDS: -0.61 Total: 40.72 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.90 -10.96 -44.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331404742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.938 kcal (2) G-P(sol) polarization free energy of solvation -33.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds