Wall clock time and date at job start Tue Mar 31 2020 10:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 116.99695 * 2 1 4 4 O 1.20823 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99533 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.47426 * 300.00792 * 5 3 2 7 7 C 1.53006 * 109.47156 * 60.00412 * 5 3 2 8 8 C 1.52997 * 109.47162 * 179.97438 * 7 5 3 9 9 C 1.52994 * 109.47164 * 300.00249 * 8 7 5 10 10 C 1.52997 * 109.47278 * 59.99995 * 9 8 7 11 11 C 1.52997 * 109.46905 * 179.97438 * 5 3 2 12 12 C 1.53006 * 109.46769 * 60.00308 * 11 5 3 13 13 N 1.46897 * 109.47334 * 300.00525 * 11 5 3 14 14 C 1.46904 * 110.99861 * 179.97438 * 13 11 5 15 15 C 1.53005 * 109.47127 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.46755 * 180.02562 * 15 14 13 17 17 S 1.81000 * 109.46634 * 179.97438 * 16 15 14 18 18 C 1.76204 * 100.00077 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99794 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99960 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00292 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99660 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99524 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99704 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99697 * 22 20 18 26 26 H 1.09004 * 109.46784 * 299.99507 * 1 2 3 27 27 H 1.09002 * 109.47469 * 59.99699 * 1 2 3 28 28 H 1.09000 * 109.46828 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46859 * 300.00317 * 7 5 3 30 30 H 1.09005 * 109.46745 * 59.99564 * 7 5 3 31 31 H 1.09001 * 109.46472 * 60.00337 * 8 7 5 32 32 H 1.08997 * 109.46940 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.47109 * 180.02562 * 9 8 7 34 34 H 1.09004 * 109.47022 * 299.99619 * 9 8 7 35 35 H 1.08997 * 109.47269 * 179.97438 * 10 9 8 36 36 H 1.08995 * 109.47407 * 60.00035 * 10 9 8 37 37 H 1.08992 * 109.47132 * 300.00042 * 12 11 5 38 38 H 1.09005 * 109.46745 * 59.99974 * 12 11 5 39 39 H 1.08994 * 109.46831 * 179.97438 * 12 11 5 40 40 H 1.00898 * 111.00207 * 303.94496 * 13 11 5 41 41 H 1.09005 * 109.47304 * 59.99944 * 14 13 11 42 42 H 1.09001 * 109.47183 * 300.00028 * 14 13 11 43 43 H 1.08991 * 109.47112 * 59.99744 * 15 14 13 44 44 H 1.08995 * 109.46517 * 299.99756 * 15 14 13 45 45 H 1.08997 * 109.47244 * 60.00276 * 16 15 14 46 46 H 1.08995 * 109.47390 * 299.99198 * 16 15 14 47 47 H 0.96998 * 119.99330 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7805 0.8890 7 6 4.1129 0.5816 -1.2503 8 6 5.6407 0.6622 -1.2512 9 6 6.0740 2.1295 -1.2512 10 6 5.5275 2.8227 -0.0016 11 6 4.0001 2.7421 -0.0011 12 6 3.4535 3.4359 1.2483 13 7 3.4743 3.4078 -1.2004 14 6 3.8714 4.8217 -1.2344 15 6 3.3071 5.4797 -2.4953 16 6 3.7213 6.9522 -2.5309 17 16 3.0543 7.7303 -4.0228 18 6 3.6664 9.3693 -3.8128 19 1 4.2609 9.6167 -2.9458 20 6 3.3837 10.3425 -4.7612 21 7 2.6587 10.0411 -5.8177 22 14 4.0320 12.0801 -4.5381 23 1 3.0409 12.8847 -3.7793 24 1 4.2571 12.6991 -5.8691 25 1 5.3133 12.0380 -3.7887 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.8037 -0.4636 -1.2504 30 1 3.7227 1.0760 -2.1400 31 1 6.0310 0.1680 -0.3615 32 1 6.0301 0.1679 -2.1412 33 1 7.1626 2.1869 -1.2523 34 1 5.6836 2.6236 -2.1410 35 1 5.8366 3.8680 -0.0014 36 1 5.9179 2.3287 0.8881 37 1 2.3651 3.3788 1.2488 38 1 3.8437 2.9419 2.1382 39 1 3.7629 4.4810 1.2482 40 1 3.7689 2.9290 -2.0383 41 1 4.9591 4.8936 -1.2433 42 1 3.4809 5.3301 -0.3529 43 1 2.2196 5.4078 -2.4869 44 1 3.6982 4.9712 -3.3764 45 1 4.8089 7.0236 -2.5396 46 1 3.3306 7.4610 -1.6498 47 1 2.3218 9.1388 -5.9332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340370525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:56 Heat of formation + Delta-G solvation = -111.584840 kcal Electronic energy + Delta-G solvation = -25100.497747 eV Core-core repulsion = 21601.494775 eV Total energy + Delta-G solvation = -3499.002972 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25184 -39.38868 -36.44406 -35.50391 -32.99022 -32.48008 -31.79050 -30.03467 -28.06726 -26.85645 -25.36423 -24.43670 -23.87677 -21.76619 -21.22103 -20.72241 -18.91902 -18.08292 -17.64852 -16.95729 -16.43646 -16.09362 -15.33234 -15.06652 -14.83478 -14.45761 -14.29291 -13.96294 -13.84732 -13.73121 -13.17819 -12.99315 -12.77863 -12.63393 -12.40755 -12.32602 -12.21438 -12.03851 -11.92746 -11.76468 -11.46424 -11.12554 -11.09765 -10.98624 -10.89425 -10.80456 -10.67628 -10.39028 -10.33361 -10.17116 -9.98733 -9.30216 -8.97012 -8.26766 -8.25880 -6.65016 -6.59285 -3.96279 2.20830 2.57358 3.30185 3.40407 3.44388 3.58274 4.03783 4.23868 4.28715 4.34059 4.44686 4.72656 4.77362 4.87745 4.92454 4.98339 5.00690 5.02558 5.14771 5.23082 5.25565 5.26449 5.32721 5.36119 5.44998 5.52648 5.59257 5.62545 5.66923 5.72254 5.74960 5.77136 5.83431 5.88188 6.00473 6.04483 6.13366 6.21174 6.29998 6.48442 6.59034 6.72494 7.10627 7.42474 7.78144 7.98712 8.53890 9.31188 10.85263 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019684 B = 0.002684 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.120211 B =10427.841151 C =11040.184543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.458 3.542 4 O -0.465 6.465 5 C -0.063 4.063 6 H 0.106 0.894 7 C -0.116 4.116 8 C -0.117 4.117 9 C -0.126 4.126 10 C -0.150 4.150 11 C 0.133 3.867 12 C -0.156 4.156 13 N -0.665 5.665 14 C 0.063 3.937 15 C -0.096 4.096 16 C -0.087 4.087 17 S -0.190 6.190 18 C -0.587 4.587 19 H 0.065 0.935 20 C 0.032 3.968 21 N -0.888 5.888 22 Si 1.086 2.914 23 H -0.284 1.284 24 H -0.280 1.280 25 H -0.287 1.287 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.336 0.664 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.783 -24.071 14.382 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.299 3.701 4 O -0.348 6.348 5 C -0.083 4.083 6 H 0.124 0.876 7 C -0.153 4.153 8 C -0.154 4.154 9 C -0.164 4.164 10 C -0.189 4.189 11 C 0.041 3.959 12 C -0.213 4.213 13 N -0.297 5.297 14 C -0.068 4.068 15 C -0.135 4.135 16 C -0.237 4.237 17 S 0.037 5.963 18 C -0.735 4.735 19 H 0.083 0.917 20 C -0.178 4.178 21 N -0.523 5.523 22 Si 0.913 3.087 23 H -0.211 1.211 24 H -0.205 1.205 25 H -0.213 1.213 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.156 0.844 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.301 -22.559 13.107 26.191 hybrid contribution 1.562 -0.890 1.564 2.383 sum 3.863 -23.448 14.672 27.929 Atomic orbital electron populations 1.23200 0.76679 1.03255 1.02589 1.86486 1.23142 1.34174 1.84789 1.23519 0.91705 0.81340 0.73551 1.90685 1.66411 1.35517 1.42212 1.21116 0.87771 0.97774 1.01636 0.87569 1.21580 0.96101 1.01096 0.96568 1.21539 0.94688 0.96748 1.02457 1.21597 1.00904 0.95558 0.98352 1.22278 0.96173 1.01775 0.98668 1.20649 0.91565 0.90815 0.92898 1.22171 1.04174 1.00391 0.94591 1.60655 1.62987 1.02613 1.03486 1.22058 0.97282 0.88059 0.99355 1.21257 1.02059 0.93627 0.96532 1.23018 1.02165 0.97062 1.01412 1.84161 1.71859 1.11604 1.28631 1.23562 1.41665 0.94263 1.14017 0.91691 1.26078 0.94927 1.04701 0.92089 1.70766 1.31004 1.23367 1.27124 0.83292 0.75843 0.73345 0.76243 1.21060 1.20532 1.21325 0.92135 0.91840 0.88507 0.90364 0.90828 0.91592 0.91250 0.91474 0.91742 0.90754 0.91357 0.89366 0.93112 0.92134 0.84412 0.95165 0.90704 0.90746 0.92131 0.92191 0.91920 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.37 -3.67 10.47 -39.27 -0.41 -4.08 16 3 C 0.46 5.12 6.80 36.01 0.24 5.37 16 4 O -0.46 -6.63 12.63 -18.75 -0.24 -6.87 16 5 C -0.06 -0.56 1.99 -91.77 -0.18 -0.74 16 6 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 7 C -0.12 -0.88 4.87 -26.73 -0.13 -1.01 16 8 C -0.12 -0.77 5.92 -26.74 -0.16 -0.93 16 9 C -0.13 -1.00 5.66 -26.74 -0.15 -1.16 16 10 C -0.15 -1.30 4.35 -26.75 -0.12 -1.41 16 11 C 0.13 1.33 0.28 -131.62 -0.04 1.30 16 12 C -0.16 -1.70 7.91 37.16 0.29 -1.40 16 13 N -0.67 -8.21 4.75 -99.98 -0.47 -8.69 16 14 C 0.06 0.87 4.90 -3.82 -0.02 0.85 16 15 C -0.10 -1.65 5.48 -26.73 -0.15 -1.80 16 16 C -0.09 -1.83 5.67 37.16 0.21 -1.62 16 17 S -0.19 -5.11 20.46 -107.50 -2.20 -7.31 16 18 C -0.59 -17.47 9.50 30.94 0.29 -17.18 16 19 H 0.06 1.90 7.80 -52.49 -0.41 1.49 16 20 C 0.03 0.95 5.49 -17.43 -0.10 0.85 16 21 N -0.89 -27.96 13.67 55.49 0.76 -27.20 16 22 Si 1.09 25.64 29.92 -169.99 -5.09 20.56 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 27 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 30 H 0.07 0.64 6.57 -51.93 -0.34 0.30 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.59 6.76 -51.93 -0.35 0.24 16 35 H 0.07 0.73 6.40 -51.93 -0.33 0.39 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 1.16 5.52 -51.93 -0.29 0.87 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.69 6.40 -51.93 -0.33 0.35 16 40 H 0.34 3.95 5.18 -39.29 -0.20 3.75 16 41 H 0.03 0.40 6.30 -51.93 -0.33 0.07 16 42 H 0.07 1.09 6.30 -51.93 -0.33 0.76 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 46 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 47 H 0.28 8.84 7.12 -40.82 -0.29 8.55 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -33.85 370.92 -8.90 -42.75 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.91 Total: 2.78 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 1.07 Total: -17.52 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.28 Total: -35.89 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.65 Total: -10.95 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.09 Total: 20.56 kcal Atomic # 16 Polarization: -5.11 SS G_CDS: -2.20 Total: -7.31 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.85 -8.90 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340370525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.839 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds