Wall clock time and date at job start Tue Mar 31 2020 10:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 116.99695 * 2 1 4 4 O 1.20823 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99533 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.47426 * 300.00792 * 5 3 2 7 7 C 1.53006 * 109.47156 * 60.00412 * 5 3 2 8 8 C 1.52997 * 109.47162 * 179.97438 * 7 5 3 9 9 C 1.52994 * 109.47164 * 300.00249 * 8 7 5 10 10 C 1.52997 * 109.47278 * 59.99995 * 9 8 7 11 11 C 1.52997 * 109.46905 * 179.97438 * 5 3 2 12 12 C 1.53006 * 109.46769 * 60.00308 * 11 5 3 13 13 N 1.46897 * 109.47334 * 300.00525 * 11 5 3 14 14 C 1.46904 * 110.99861 * 179.97438 * 13 11 5 15 15 C 1.53005 * 109.47127 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.46755 * 180.02562 * 15 14 13 17 17 S 1.81000 * 109.46634 * 179.97438 * 16 15 14 18 18 C 1.76204 * 100.00077 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99794 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99960 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00292 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99660 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99524 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99704 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99697 * 22 20 18 26 26 H 1.09004 * 109.46784 * 299.99507 * 1 2 3 27 27 H 1.09002 * 109.47469 * 59.99699 * 1 2 3 28 28 H 1.09000 * 109.46828 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46859 * 300.00317 * 7 5 3 30 30 H 1.09005 * 109.46745 * 59.99564 * 7 5 3 31 31 H 1.09001 * 109.46472 * 60.00337 * 8 7 5 32 32 H 1.08997 * 109.46940 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.47109 * 180.02562 * 9 8 7 34 34 H 1.09004 * 109.47022 * 299.99619 * 9 8 7 35 35 H 1.08997 * 109.47269 * 179.97438 * 10 9 8 36 36 H 1.08995 * 109.47407 * 60.00035 * 10 9 8 37 37 H 1.08992 * 109.47132 * 300.00042 * 12 11 5 38 38 H 1.09005 * 109.46745 * 59.99974 * 12 11 5 39 39 H 1.08994 * 109.46831 * 179.97438 * 12 11 5 40 40 H 1.00898 * 111.00207 * 303.94496 * 13 11 5 41 41 H 1.09005 * 109.47304 * 59.99944 * 14 13 11 42 42 H 1.09001 * 109.47183 * 300.00028 * 14 13 11 43 43 H 1.08991 * 109.47112 * 59.99744 * 15 14 13 44 44 H 1.08995 * 109.46517 * 299.99756 * 15 14 13 45 45 H 1.08997 * 109.47244 * 60.00276 * 16 15 14 46 46 H 1.08995 * 109.47390 * 299.99198 * 16 15 14 47 47 H 0.96998 * 119.99330 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7805 0.8890 7 6 4.1129 0.5816 -1.2503 8 6 5.6407 0.6622 -1.2512 9 6 6.0740 2.1295 -1.2512 10 6 5.5275 2.8227 -0.0016 11 6 4.0001 2.7421 -0.0011 12 6 3.4535 3.4359 1.2483 13 7 3.4743 3.4078 -1.2004 14 6 3.8714 4.8217 -1.2344 15 6 3.3071 5.4797 -2.4953 16 6 3.7213 6.9522 -2.5309 17 16 3.0543 7.7303 -4.0228 18 6 3.6664 9.3693 -3.8128 19 1 4.2609 9.6167 -2.9458 20 6 3.3837 10.3425 -4.7612 21 7 2.6587 10.0411 -5.8177 22 14 4.0320 12.0801 -4.5381 23 1 3.0409 12.8847 -3.7793 24 1 4.2571 12.6991 -5.8691 25 1 5.3133 12.0380 -3.7887 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.8037 -0.4636 -1.2504 30 1 3.7227 1.0760 -2.1400 31 1 6.0310 0.1680 -0.3615 32 1 6.0301 0.1679 -2.1412 33 1 7.1626 2.1869 -1.2523 34 1 5.6836 2.6236 -2.1410 35 1 5.8366 3.8680 -0.0014 36 1 5.9179 2.3287 0.8881 37 1 2.3651 3.3788 1.2488 38 1 3.8437 2.9419 2.1382 39 1 3.7629 4.4810 1.2482 40 1 3.7689 2.9290 -2.0383 41 1 4.9591 4.8936 -1.2433 42 1 3.4809 5.3301 -0.3529 43 1 2.2196 5.4078 -2.4869 44 1 3.6982 4.9712 -3.3764 45 1 4.8089 7.0236 -2.5396 46 1 3.3306 7.4610 -1.6498 47 1 2.3218 9.1388 -5.9332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340370525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:55 Heat of formation + Delta-G solvation = -131.616985 kcal Electronic energy + Delta-G solvation = -25101.366406 eV Core-core repulsion = 21601.494775 eV Total energy + Delta-G solvation = -3499.871631 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.05791 -40.19635 -37.30205 -36.57740 -34.79165 -34.00062 -32.51337 -31.11423 -28.74738 -27.67372 -27.31741 -26.00199 -24.55803 -22.88769 -22.04858 -21.66381 -20.30767 -19.67629 -18.45285 -17.81736 -17.23167 -17.11211 -16.75901 -16.23902 -15.86207 -15.74037 -15.49700 -15.24543 -14.77349 -14.71001 -14.69725 -14.39418 -14.01999 -13.76941 -13.55320 -13.21819 -13.06108 -12.93141 -12.84515 -12.76286 -12.64534 -12.47601 -12.35718 -12.20317 -11.97257 -11.88569 -11.67686 -11.60352 -11.43259 -11.18329 -11.12233 -11.03858 -10.82971 -10.42945 -9.21769 -8.96177 -8.88799 -6.30177 1.37096 1.39807 1.55654 1.57713 1.77186 1.85336 2.31170 2.98436 3.03709 3.16630 3.49090 3.67417 3.78161 3.89320 4.03779 4.08106 4.17818 4.24712 4.25261 4.34364 4.35098 4.35992 4.36597 4.45025 4.48077 4.62207 4.66718 4.67741 4.73488 4.83100 4.85258 4.95264 5.01608 5.09177 5.11827 5.15872 5.20996 5.23971 5.34568 5.36788 5.45565 5.60793 5.65639 6.12331 6.14127 6.48178 6.95481 7.02902 8.48468 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019684 B = 0.002684 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.120211 B =10427.841151 C =11040.184543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.457 3.543 4 O -0.503 6.503 5 C -0.060 4.060 6 H 0.132 0.868 7 C -0.112 4.112 8 C -0.110 4.110 9 C -0.126 4.126 10 C -0.144 4.144 11 C 0.132 3.868 12 C -0.155 4.155 13 N -0.676 5.676 14 C 0.078 3.922 15 C -0.082 4.082 16 C -0.064 4.064 17 S -0.246 6.246 18 C -0.605 4.605 19 H 0.064 0.936 20 C -0.019 4.019 21 N -0.912 5.912 22 Si 1.137 2.863 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.267 1.267 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.129 0.871 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.339 0.661 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.562 -25.404 15.929 30.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.285 6.285 3 C 0.299 3.701 4 O -0.390 6.390 5 C -0.079 4.079 6 H 0.150 0.850 7 C -0.149 4.149 8 C -0.147 4.147 9 C -0.164 4.164 10 C -0.183 4.183 11 C 0.041 3.959 12 C -0.212 4.212 13 N -0.309 5.309 14 C -0.052 4.052 15 C -0.121 4.121 16 C -0.213 4.213 17 S -0.017 6.017 18 C -0.752 4.752 19 H 0.083 0.917 20 C -0.222 4.222 21 N -0.547 5.547 22 Si 0.955 3.045 23 H -0.193 1.193 24 H -0.199 1.199 25 H -0.191 1.191 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.147 0.853 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.160 0.840 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.079 -23.944 14.666 28.373 hybrid contribution 0.950 -0.604 1.140 1.602 sum 5.029 -24.548 15.806 29.626 Atomic orbital electron populations 1.23405 0.75703 1.05175 1.01920 1.86483 1.24168 1.33532 1.84355 1.24043 0.92656 0.81061 0.72324 1.90683 1.67419 1.36739 1.44127 1.21204 0.86207 0.97125 1.03413 0.84993 1.21568 0.96912 1.01324 0.95126 1.21510 0.93593 0.95869 1.03748 1.21601 1.01309 0.96319 0.97182 1.22219 0.94674 1.01451 0.99991 1.20716 0.92637 0.91311 0.91239 1.22142 1.02670 1.00301 0.96095 1.60587 1.63762 1.01782 1.04735 1.21789 0.97566 0.89029 0.96864 1.21127 1.01037 0.91395 0.98589 1.22994 1.01999 0.98605 0.97741 1.84241 1.72943 1.11647 1.32913 1.23917 1.41621 0.95562 1.14106 0.91727 1.27823 0.94143 1.09066 0.91194 1.70885 1.32670 1.22657 1.28500 0.82704 0.76474 0.68405 0.76926 1.19304 1.19922 1.19124 0.92398 0.92984 0.85300 0.89216 0.92402 0.89828 0.90428 0.90640 0.93369 0.91966 0.89334 0.91805 0.90877 0.93073 0.84041 0.93991 0.91367 0.92468 0.91914 0.91552 0.92097 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.37 -6.86 10.47 -51.45 -0.54 -7.40 16 3 C 0.46 9.83 6.80 71.24 0.48 10.31 16 4 O -0.50 -14.55 12.63 21.97 0.28 -14.27 16 5 C -0.06 -0.94 1.99 -11.54 -0.02 -0.96 16 6 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 7 C -0.11 -1.44 4.87 30.60 0.15 -1.29 16 8 C -0.11 -1.10 5.92 30.59 0.18 -0.92 16 9 C -0.13 -1.70 5.66 30.59 0.17 -1.53 16 10 C -0.14 -2.14 4.35 30.58 0.13 -2.01 16 11 C 0.13 2.46 0.28 3.51 0.00 2.46 16 12 C -0.15 -3.21 7.91 71.98 0.57 -2.64 16 13 N -0.68 -16.40 4.75 -470.23 -2.23 -18.63 16 14 C 0.08 2.15 4.90 86.30 0.42 2.57 16 15 C -0.08 -2.86 5.48 30.60 0.17 -2.69 16 16 C -0.06 -2.71 5.67 71.98 0.41 -2.30 16 17 S -0.25 -13.53 20.46 -56.49 -1.16 -14.68 16 18 C -0.60 -36.35 9.50 67.95 0.65 -35.70 16 19 H 0.06 3.77 7.80 -2.91 -0.02 3.75 16 20 C -0.02 -1.13 5.49 84.86 0.47 -0.66 16 21 N -0.91 -58.35 13.67 21.65 0.30 -58.05 16 22 Si 1.14 50.90 29.92 68.60 2.05 52.95 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 26 H 0.06 0.89 8.13 -2.38 -0.02 0.87 16 27 H 0.05 0.89 8.13 -2.39 -0.02 0.88 16 28 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 0.98 8.11 -2.39 -0.02 0.96 16 30 H 0.06 0.94 6.57 -2.38 -0.02 0.92 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.05 0.81 6.76 -2.38 -0.02 0.79 16 35 H 0.06 1.09 6.40 -2.39 -0.02 1.08 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 1.68 5.52 -2.39 -0.01 1.67 16 38 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.05 1.13 6.40 -2.39 -0.02 1.12 16 40 H 0.34 7.82 5.18 -89.70 -0.46 7.36 16 41 H 0.04 1.06 6.30 -2.38 -0.02 1.05 16 42 H 0.07 1.98 6.30 -2.39 -0.02 1.97 16 43 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 45 H 0.07 2.73 8.14 -2.40 -0.02 2.71 16 46 H 0.06 2.59 8.14 -2.40 -0.02 2.57 16 47 H 0.26 17.28 7.12 -92.71 -0.66 16.62 16 Total: -1.00 -74.79 370.92 4.27 -70.52 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.60 Total: 23.26 kcal Atomic # 6 Polarization: -38.68 SS G_CDS: 4.98 Total: -33.70 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -1.94 Total: -76.69 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.26 Total: -21.66 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.05 Total: 52.95 kcal Atomic # 16 Polarization: -13.53 SS G_CDS: -1.16 Total: -14.68 kcal Total: -74.79 4.27 -70.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340370525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.096 kcal (2) G-P(sol) polarization free energy of solvation -74.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds