Wall clock time and date at job start Tue Mar 31 2020 11:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34673 * 126.59305 * 2 1 4 4 N 1.34132 * 108.02007 * 179.80828 * 3 2 1 5 5 C 1.30501 * 109.25550 * 0.36864 * 4 3 2 6 6 C 1.50703 * 125.64799 * 179.88914 * 5 4 3 7 7 N 1.46500 * 109.47189 * 269.69684 * 6 5 4 8 8 C 1.39665 * 119.99720 * 180.02562 * 7 6 5 9 9 C 1.38972 * 120.04659 * 0.02562 * 8 7 6 10 10 C 1.38121 * 120.03267 * 179.97438 * 9 8 7 11 11 C 1.38217 * 120.12905 * 359.74558 * 10 9 8 12 12 C 1.38769 * 120.09042 * 0.50710 * 11 10 9 13 13 O 1.35904 * 120.01777 * 179.76755 * 12 11 10 14 14 C 1.42903 * 116.99628 * 359.72721 * 13 12 11 15 15 C 1.53000 * 109.46726 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99711 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00219 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46794 * 90.00022 * 20 18 16 22 22 H 1.48502 * 109.47140 * 210.00005 * 20 18 16 23 23 H 1.48501 * 109.46982 * 330.00118 * 20 18 16 24 24 C 1.38613 * 119.96776 * 359.49589 * 12 11 10 25 25 N 1.35047 * 108.69770 * 359.63150 * 5 4 3 26 26 C 1.46499 * 126.39190 * 180.25055 * 25 5 4 27 27 H 1.08991 * 109.47628 * 269.95916 * 1 2 3 28 28 H 1.08999 * 109.46721 * 29.96737 * 1 2 3 29 29 H 1.09001 * 109.46821 * 149.95538 * 1 2 3 30 30 H 1.07995 * 125.98584 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.46906 * 149.69272 * 6 5 4 32 32 H 1.08999 * 109.46849 * 29.70008 * 6 5 4 33 33 H 0.96999 * 120.00164 * 359.97438 * 7 6 5 34 34 H 1.07993 * 119.98629 * 0.02562 * 9 8 7 35 35 H 1.08001 * 119.93308 * 180.02562 * 10 9 8 36 36 H 1.07996 * 119.95268 * 180.27991 * 11 10 9 37 37 H 1.09002 * 109.47382 * 59.99787 * 14 13 12 38 38 H 1.09001 * 109.46938 * 299.99774 * 14 13 12 39 39 H 1.09001 * 109.47194 * 299.99575 * 15 14 13 40 40 H 1.08992 * 109.47399 * 59.99748 * 15 14 13 41 41 H 0.97000 * 119.99684 * 179.97438 * 19 18 16 42 42 H 1.07998 * 120.06912 * 180.23320 * 24 12 11 43 43 H 1.08997 * 109.47638 * 89.99652 * 26 25 5 44 44 H 1.09000 * 109.47130 * 209.99453 * 26 25 5 45 45 H 1.09005 * 109.47567 * 329.99424 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5813 0.6541 0.0043 5 6 3.5968 -0.6509 -0.0010 6 6 4.8318 -1.5145 -0.0011 7 7 5.2317 -1.7947 -1.3823 8 6 6.3567 -2.5821 -1.6375 9 6 7.0970 -3.1007 -0.5819 10 6 8.2092 -3.8798 -0.8346 11 6 8.5856 -4.1501 -2.1368 12 6 7.8532 -3.6306 -3.1948 13 8 8.2274 -3.8934 -4.4746 14 6 9.3882 -4.7066 -4.6571 15 6 9.6516 -4.8911 -6.1529 16 6 10.8755 -5.7492 -6.3453 17 1 11.4119 -6.1250 -5.4866 18 6 11.3102 -6.0545 -7.6176 19 7 12.3785 -6.8030 -7.7856 20 14 10.3818 -5.4051 -9.1029 21 1 10.9392 -4.0863 -9.4971 22 1 10.5236 -6.3598 -10.2315 23 1 8.9448 -5.2530 -8.7607 24 6 6.7364 -2.8482 -2.9457 25 7 2.3229 -1.0990 -0.0007 26 6 1.8943 -2.4999 -0.0004 27 1 -0.3634 -0.0007 1.0275 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3633 -0.8896 -0.5145 30 1 1.9865 2.1117 -0.0004 31 1 4.6197 -2.4519 0.5131 32 1 5.6397 -0.9932 0.5125 33 1 4.7148 -1.4340 -2.1196 34 1 6.8022 -2.8952 0.4365 35 1 8.7831 -4.2824 -0.0130 36 1 9.4531 -4.7634 -2.3311 37 1 9.2267 -5.6798 -4.1934 38 1 10.2478 -4.2218 -4.1942 39 1 8.7921 -5.3756 -6.6161 40 1 9.8133 -3.9178 -6.6161 41 1 12.6841 -7.0180 -8.6807 42 1 6.1630 -2.4462 -3.7679 43 1 1.7883 -2.8474 1.0272 44 1 0.9368 -2.5870 -0.5139 45 1 2.6389 -3.1078 -0.5145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341160373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:29 Heat of formation + Delta-G solvation = 44.786106 kcal Electronic energy + Delta-G solvation = -24486.276393 eV Core-core repulsion = 20890.902974 eV Total energy + Delta-G solvation = -3595.373419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.61784 -39.81476 -37.88146 -35.35711 -34.55260 -33.30629 -32.56667 -31.11362 -30.24016 -29.04041 -27.50803 -27.43643 -25.44367 -24.79283 -22.63538 -21.63628 -21.10774 -20.28986 -20.06228 -18.17494 -17.37026 -16.77769 -16.41539 -16.12677 -15.63305 -15.39580 -15.36601 -15.00183 -14.57087 -14.29821 -14.09543 -13.78402 -13.72166 -13.45111 -13.29709 -13.10808 -12.91793 -12.83438 -12.77148 -12.73655 -12.45343 -11.77322 -11.65156 -11.33688 -10.86529 -10.70633 -10.34963 -10.15026 -10.11149 -10.01997 -9.88597 -9.75697 -9.32240 -8.70531 -8.60886 -8.02630 -7.42638 -6.12012 -4.12619 1.44011 1.65790 1.80072 2.24770 2.58494 3.29828 3.34310 3.37004 3.42518 3.90524 3.95595 4.05636 4.17810 4.23142 4.40501 4.55571 4.59267 4.75278 4.85766 5.01090 5.03362 5.04644 5.12460 5.22196 5.29026 5.31683 5.44665 5.48783 5.51916 5.72062 5.90479 5.97436 5.99273 6.04046 6.31186 6.33384 6.46897 6.55182 6.66620 6.70324 6.81233 7.08442 7.25850 7.28654 7.53767 7.65189 7.66901 7.99284 8.40693 8.89084 9.48443 11.00513 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024089 B = 0.002016 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.053724 B =13882.642452 C =14529.852961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.022 4.022 3 C -0.027 4.027 4 N -0.469 5.469 5 C 0.184 3.816 6 C 0.219 3.781 7 N -0.745 5.745 8 C 0.247 3.753 9 C -0.243 4.243 10 C -0.035 4.035 11 C -0.261 4.261 12 C 0.187 3.813 13 O -0.320 6.320 14 C 0.073 3.927 15 C -0.010 4.010 16 C -0.526 4.526 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.880 3.120 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.263 1.263 24 C -0.234 4.234 25 N -0.448 5.448 26 C 0.066 3.934 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.171 0.829 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.400 0.600 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.027 0.973 40 H 0.023 0.977 41 H 0.265 0.735 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.922 10.946 19.889 33.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C -0.176 4.176 4 N -0.187 5.187 5 C -0.078 4.078 6 C 0.093 3.907 7 N -0.377 5.377 8 C 0.145 3.855 9 C -0.265 4.265 10 C -0.054 4.054 11 C -0.281 4.281 12 C 0.139 3.861 13 O -0.233 6.233 14 C -0.001 4.001 15 C -0.047 4.047 16 C -0.564 4.564 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.707 3.293 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.188 1.188 24 C -0.258 4.258 25 N -0.132 5.132 26 C -0.077 4.077 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.189 0.811 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.235 0.765 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.142 0.858 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -24.246 11.269 19.774 33.254 hybrid contribution -1.128 -0.210 -0.976 1.506 sum -25.374 11.059 18.797 33.459 Atomic orbital electron populations 1.20238 0.86965 1.03480 1.02788 1.21358 0.94668 0.86801 1.10941 1.22147 0.88159 0.98649 1.08674 1.70261 1.22537 1.07862 1.18050 1.23028 0.85386 0.90980 1.08359 1.19370 0.90301 0.95774 0.85205 1.44484 1.29989 1.57186 1.06084 1.17286 0.86195 0.89366 0.92652 1.20395 1.00494 1.08420 0.97198 1.20637 0.94455 0.94387 0.95904 1.21186 1.04780 1.09422 0.92724 1.18761 0.91808 0.91326 0.84167 1.86100 1.46974 1.67336 1.22892 1.23072 0.83744 0.92321 1.00924 1.19592 0.97943 0.97697 0.89476 1.20851 1.09806 1.31416 0.94299 0.90709 1.24936 0.94699 0.94456 0.98953 1.69895 1.23697 1.37284 1.22731 0.86758 0.81240 0.78978 0.82296 1.20058 1.21206 1.18775 1.19632 1.01415 1.09694 0.95026 1.45191 1.06617 1.07213 1.54134 1.22128 1.02724 0.78926 1.03902 0.90812 0.89769 0.91696 0.81141 0.90900 0.89096 0.76487 0.86587 0.86134 0.85373 0.92434 0.92431 0.95470 0.95858 0.92479 0.85832 0.90182 0.89396 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.17 36.00 0.37 0.06 16 2 C -0.02 -0.17 6.95 -81.60 -0.57 -0.74 16 3 C -0.03 -0.26 11.79 -17.81 -0.21 -0.47 16 4 N -0.47 -5.50 11.25 -10.81 -0.12 -5.62 16 5 C 0.18 1.78 7.27 -155.41 -1.13 0.65 16 6 C 0.22 1.90 5.00 -5.19 -0.03 1.87 16 7 N -0.74 -7.64 5.72 -59.82 -0.34 -7.98 16 8 C 0.25 3.13 6.65 -83.81 -0.56 2.57 16 9 C -0.24 -2.91 9.31 -39.35 -0.37 -3.28 16 10 C -0.04 -0.45 10.03 -39.63 -0.40 -0.85 16 11 C -0.26 -4.08 9.04 -39.39 -0.36 -4.44 16 12 C 0.19 3.24 6.68 -39.25 -0.26 2.97 16 13 O -0.32 -6.41 10.13 -19.44 -0.20 -6.61 16 14 C 0.07 1.54 4.68 37.16 0.17 1.71 16 15 C -0.01 -0.24 4.41 -27.88 -0.12 -0.36 16 16 C -0.53 -14.93 9.66 -34.44 -0.33 -15.26 16 17 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 20 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 24 C -0.23 -3.53 9.83 -39.24 -0.39 -3.92 16 25 N -0.45 -3.42 3.15 -116.68 -0.37 -3.79 16 26 C 0.07 0.28 10.61 59.85 0.64 0.92 16 27 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.20 7.22 -51.93 -0.38 -0.17 16 30 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.07 0.50 7.51 -51.93 -0.39 0.11 16 32 H 0.09 0.83 7.95 -51.93 -0.41 0.41 16 33 H 0.40 4.09 8.47 -40.82 -0.35 3.74 16 34 H 0.12 1.11 6.73 -52.49 -0.35 0.76 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.13 2.01 6.29 -52.49 -0.33 1.68 16 37 H 0.06 1.16 7.65 -51.93 -0.40 0.76 16 38 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 39 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 40 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.09 0.25 7.20 -51.93 -0.37 -0.13 16 45 H 0.09 0.41 7.66 -51.93 -0.40 0.01 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -33.77 374.02 -9.59 -43.36 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.66 Total: 1.12 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -3.64 Total: -16.57 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.06 Total: -44.02 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.20 Total: -6.61 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.77 -9.59 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341160373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.143 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds