Wall clock time and date at job start Tue Mar 31 2020 11:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38669 * 120.41814 * 2 1 4 4 C 1.38629 * 118.42152 * 179.78130 * 3 2 1 5 5 C 1.38232 * 119.15801 * 0.51840 * 4 3 2 6 6 N 1.31850 * 120.76149 * 359.72336 * 5 4 3 7 7 C 1.31886 * 121.73246 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.62267 * 180.02562 * 7 6 5 9 9 C 1.53010 * 109.46941 * 270.02034 * 8 7 6 10 10 C 1.50695 * 109.46941 * 180.02562 * 9 8 7 11 11 N 1.29946 * 126.29180 * 90.02687 * 10 9 8 12 12 O 1.21293 * 110.25266 * 179.97438 * 11 10 9 13 13 C 1.33641 * 109.81623 * 359.97438 * 12 11 10 14 14 C 1.50700 * 126.55243 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47007 * 269.97290 * 14 13 12 16 16 C 1.53006 * 109.46993 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.47311 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47131 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99991 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99646 * 180.02562 * 18 17 16 21 21 N 1.31506 * 120.00137 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99442 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47168 * 89.99771 * 22 20 18 24 24 H 1.48505 * 109.46591 * 209.99564 * 22 20 18 25 25 H 1.48497 * 109.47355 * 329.99668 * 22 20 18 26 26 N 1.31131 * 106.89387 * 359.76513 * 13 12 11 27 27 H 1.09002 * 109.47152 * 269.71734 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.71835 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.71815 * 1 2 3 30 30 H 1.08001 * 120.79148 * 0.02947 * 3 2 1 31 31 H 1.08002 * 120.42211 * 180.22274 * 4 3 2 32 32 H 1.07998 * 119.61894 * 179.74832 * 5 4 3 33 33 H 1.09000 * 109.46940 * 30.01769 * 8 7 6 34 34 H 1.08996 * 109.47332 * 150.02035 * 8 7 6 35 35 H 1.09003 * 109.46771 * 300.00062 * 9 8 7 36 36 H 1.08996 * 109.47107 * 59.99863 * 9 8 7 37 37 H 1.09001 * 109.47028 * 29.97841 * 14 13 12 38 38 H 1.09006 * 109.47003 * 149.97463 * 14 13 12 39 39 H 1.08999 * 109.47219 * 299.99900 * 15 14 13 40 40 H 1.08992 * 109.47115 * 60.00278 * 15 14 13 41 41 H 1.09001 * 109.46855 * 300.00437 * 16 15 14 42 42 H 1.08999 * 109.47023 * 59.99707 * 16 15 14 43 43 H 1.09007 * 109.46674 * 299.99943 * 17 16 15 44 44 H 1.08999 * 109.47481 * 59.99786 * 17 16 15 45 45 H 0.97003 * 119.99529 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 0.0047 5 6 4.2256 -0.0823 -0.0018 6 7 3.5254 -1.1995 -0.0068 7 6 2.2066 -1.1916 -0.0064 8 6 1.4539 -2.4971 -0.0116 9 6 1.1992 -2.9331 -1.4560 10 6 0.4459 -4.2383 -1.4613 11 7 -0.8457 -4.3809 -1.4625 12 8 -1.1381 -5.5581 -1.4676 13 6 -0.0271 -6.3009 -1.4707 14 6 0.0461 -7.8061 -1.4766 15 6 0.0718 -8.3210 -0.0362 16 6 0.1468 -9.8492 -0.0422 17 6 0.1720 -10.3643 1.3983 18 6 0.2465 -11.8694 1.3923 19 1 0.2728 -12.4051 0.4549 20 6 0.2799 -12.5627 2.5837 21 7 0.2473 -11.9104 3.7251 22 14 0.3715 -14.4285 2.5763 23 1 1.7942 -14.8542 2.5749 24 1 -0.3037 -14.9619 3.7866 25 1 -0.3031 -14.9524 1.3615 26 7 0.9870 -5.4696 -1.4722 27 1 -0.3633 -0.0051 1.0277 28 1 -0.3633 -0.8875 -0.5182 29 1 -0.3633 0.8925 -0.5095 30 1 1.6890 2.1423 0.0005 31 1 4.1736 2.0592 0.0084 32 1 5.3046 -0.1286 -0.0024 33 1 2.0435 -3.2585 0.4991 34 1 0.5015 -2.3695 0.5027 35 1 0.6097 -2.1717 -1.9667 36 1 2.1516 -3.0608 -1.9704 37 1 -0.8255 -8.2102 -1.9915 38 1 0.9524 -8.1237 -1.9923 39 1 0.9435 -7.9169 0.4787 40 1 -0.8343 -8.0034 0.4795 41 1 -0.7245 -10.2537 -0.5572 42 1 1.0533 -10.1665 -0.5578 43 1 1.0432 -9.9598 1.9136 44 1 -0.7347 -10.0471 1.9135 45 1 0.2713 -12.3982 4.5633 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351125673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:39 Heat of formation + Delta-G solvation = 64.741086 kcal Electronic energy + Delta-G solvation = -24264.227243 eV Core-core repulsion = 20669.719137 eV Total energy + Delta-G solvation = -3594.508106 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.56371 -40.76303 -36.57922 -35.95310 -34.63281 -33.81773 -33.24692 -32.05205 -30.62544 -29.32414 -27.75601 -25.79644 -25.76239 -23.60039 -22.87251 -22.44518 -21.74355 -20.78068 -20.16646 -18.05273 -17.43406 -17.11302 -16.79919 -16.20590 -15.53614 -15.20861 -15.04143 -14.76338 -14.46908 -14.39631 -13.86496 -13.46597 -13.40140 -13.14234 -12.99864 -12.92803 -12.76663 -12.69736 -12.20606 -12.06036 -11.75623 -11.64677 -11.41850 -11.36666 -11.04727 -10.95925 -10.64290 -10.57044 -10.53441 -10.11794 -9.93823 -9.74427 -9.69961 -9.30006 -9.14386 -9.03437 -8.33556 -5.98496 -4.00953 0.69280 0.90204 1.16416 2.20319 2.86026 3.33212 3.35218 3.39481 3.42503 3.54110 3.90370 4.05096 4.30555 4.42900 4.47100 4.51267 4.62154 4.78371 4.84240 4.97043 5.02125 5.11618 5.19201 5.19689 5.24720 5.25624 5.37432 5.38963 5.54039 5.57719 5.60342 5.76011 5.80449 5.86014 5.89766 5.93457 6.05779 6.08568 6.34770 6.36410 6.69322 6.84371 7.11504 7.66597 7.69069 7.83008 8.01632 8.17147 8.43577 9.06469 9.63143 11.12821 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.001916 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.213025 B =14612.428623 C =15398.842064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.131 4.131 3 C -0.077 4.077 4 C -0.174 4.174 5 C 0.095 3.905 6 N -0.474 5.474 7 C 0.132 3.868 8 C -0.068 4.068 9 C -0.016 4.016 10 C 0.169 3.831 11 N -0.390 5.390 12 O 0.074 5.926 13 C 0.200 3.800 14 C -0.031 4.031 15 C -0.115 4.115 16 C -0.108 4.108 17 C 0.019 3.981 18 C -0.521 4.521 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 N -0.483 5.483 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.156 0.844 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 27.561 -10.964 29.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.133 4.133 3 C -0.103 4.103 4 C -0.193 4.193 5 C -0.062 4.062 6 N -0.182 5.182 7 C -0.006 4.006 8 C -0.107 4.107 9 C -0.056 4.056 10 C -0.104 4.104 11 N -0.099 5.099 12 O 0.016 5.984 13 C -0.020 4.020 14 C -0.070 4.070 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.018 4.018 18 C -0.559 4.559 19 H 0.074 0.926 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 N -0.217 5.217 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.174 0.826 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.489 27.532 -10.794 29.677 hybrid contribution -0.275 -0.211 0.192 0.397 sum 2.214 27.321 -10.602 29.389 Atomic orbital electron populations 1.20853 0.90081 1.03495 1.03008 1.20771 0.97671 0.93530 1.01305 1.21493 0.94202 0.98031 0.96566 1.22157 0.95285 0.99703 1.02197 1.22775 1.00401 0.87550 0.95450 1.67522 1.07634 1.31610 1.11463 1.20949 0.89699 0.94222 0.95685 1.20501 1.00180 0.93655 0.96371 1.19799 0.99867 0.88231 0.97682 1.25666 0.87710 0.95993 1.01044 1.74590 1.16976 0.96547 1.21753 1.85285 1.35555 1.11765 1.65766 1.29179 0.79796 0.99331 0.93734 1.20547 1.05713 0.78996 1.01766 1.21735 1.02803 0.98864 0.92001 1.21634 1.00722 0.90657 1.01601 1.19104 0.97317 0.95588 0.89750 1.21262 1.50374 0.92012 0.92264 0.92626 1.25039 0.95393 0.98426 0.95705 1.69965 1.50826 1.35441 0.97248 0.86601 0.78118 0.85835 0.77479 1.20689 1.21272 1.19875 1.71949 1.29746 0.99083 1.20879 0.90592 0.90610 0.91151 0.84832 0.84770 0.82633 0.88859 0.89536 0.89222 0.88216 0.88073 0.87253 0.91444 0.91665 0.92913 0.92900 0.96561 0.96562 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.21 36.01 0.33 -0.41 16 2 C -0.13 -1.07 5.90 -104.48 -0.62 -1.69 16 3 C -0.08 -0.53 9.86 -39.28 -0.39 -0.92 16 4 C -0.17 -1.16 10.11 -39.44 -0.40 -1.56 16 5 C 0.10 0.80 11.18 -17.55 -0.20 0.61 16 6 N -0.47 -5.24 10.27 -9.47 -0.10 -5.34 16 7 C 0.13 1.33 6.03 -82.59 -0.50 0.84 16 8 C -0.07 -0.69 4.80 -27.88 -0.13 -0.83 16 9 C -0.02 -0.17 5.69 -27.88 -0.16 -0.33 16 10 C 0.17 2.25 7.47 -156.37 -1.17 1.08 16 11 N -0.39 -5.46 12.16 30.89 0.38 -5.09 16 12 O 0.07 1.03 11.31 18.11 0.20 1.24 16 13 C 0.20 2.72 7.77 -13.06 -0.10 2.62 16 14 C -0.03 -0.38 5.84 -27.89 -0.16 -0.54 16 15 C -0.12 -1.79 5.20 -26.73 -0.14 -1.93 16 16 C -0.11 -2.06 5.15 -26.73 -0.14 -2.19 16 17 C 0.02 0.49 4.97 -27.89 -0.14 0.35 16 18 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 22 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 N -0.48 -7.09 11.55 -9.87 -0.11 -7.20 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.51 5.88 -51.93 -0.31 0.21 16 29 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 32 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 0.82 6.69 -51.93 -0.35 0.47 16 35 H 0.09 0.79 7.41 -51.93 -0.38 0.40 16 36 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -33.04 381.04 -9.41 -42.44 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.92 Total: -3.81 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -4.32 Total: -18.31 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.90 Total: -43.86 kcal Atomic # 8 Polarization: 1.03 SS G_CDS: 0.20 Total: 1.24 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.04 -9.41 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351125673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.185 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds