Wall clock time and date at job start Tue Mar 31 2020 11:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38669 * 120.41814 * 2 1 4 4 C 1.38629 * 118.42152 * 179.78130 * 3 2 1 5 5 C 1.38232 * 119.15801 * 0.51840 * 4 3 2 6 6 N 1.31850 * 120.76149 * 359.72336 * 5 4 3 7 7 C 1.31886 * 121.73246 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.62267 * 180.02562 * 7 6 5 9 9 C 1.53010 * 109.46941 * 270.02034 * 8 7 6 10 10 C 1.50695 * 109.46941 * 180.02562 * 9 8 7 11 11 N 1.29946 * 126.29180 * 90.02687 * 10 9 8 12 12 O 1.21293 * 110.25266 * 179.97438 * 11 10 9 13 13 C 1.33641 * 109.81623 * 359.97438 * 12 11 10 14 14 C 1.50700 * 126.55243 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47007 * 269.97290 * 14 13 12 16 16 C 1.53006 * 109.46993 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.47311 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47131 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99991 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99646 * 180.02562 * 18 17 16 21 21 N 1.31506 * 120.00137 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99442 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47168 * 89.99771 * 22 20 18 24 24 H 1.48505 * 109.46591 * 209.99564 * 22 20 18 25 25 H 1.48497 * 109.47355 * 329.99668 * 22 20 18 26 26 N 1.31131 * 106.89387 * 359.76513 * 13 12 11 27 27 H 1.09002 * 109.47152 * 269.71734 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.71835 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.71815 * 1 2 3 30 30 H 1.08001 * 120.79148 * 0.02947 * 3 2 1 31 31 H 1.08002 * 120.42211 * 180.22274 * 4 3 2 32 32 H 1.07998 * 119.61894 * 179.74832 * 5 4 3 33 33 H 1.09000 * 109.46940 * 30.01769 * 8 7 6 34 34 H 1.08996 * 109.47332 * 150.02035 * 8 7 6 35 35 H 1.09003 * 109.46771 * 300.00062 * 9 8 7 36 36 H 1.08996 * 109.47107 * 59.99863 * 9 8 7 37 37 H 1.09001 * 109.47028 * 29.97841 * 14 13 12 38 38 H 1.09006 * 109.47003 * 149.97463 * 14 13 12 39 39 H 1.08999 * 109.47219 * 299.99900 * 15 14 13 40 40 H 1.08992 * 109.47115 * 60.00278 * 15 14 13 41 41 H 1.09001 * 109.46855 * 300.00437 * 16 15 14 42 42 H 1.08999 * 109.47023 * 59.99707 * 16 15 14 43 43 H 1.09007 * 109.46674 * 299.99943 * 17 16 15 44 44 H 1.08999 * 109.47481 * 59.99786 * 17 16 15 45 45 H 0.97003 * 119.99529 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 0.0047 5 6 4.2256 -0.0823 -0.0018 6 7 3.5254 -1.1995 -0.0068 7 6 2.2066 -1.1916 -0.0064 8 6 1.4539 -2.4971 -0.0116 9 6 1.1992 -2.9331 -1.4560 10 6 0.4459 -4.2383 -1.4613 11 7 -0.8457 -4.3809 -1.4625 12 8 -1.1381 -5.5581 -1.4676 13 6 -0.0271 -6.3009 -1.4707 14 6 0.0461 -7.8061 -1.4766 15 6 0.0718 -8.3210 -0.0362 16 6 0.1468 -9.8492 -0.0422 17 6 0.1720 -10.3643 1.3983 18 6 0.2465 -11.8694 1.3923 19 1 0.2728 -12.4051 0.4549 20 6 0.2799 -12.5627 2.5837 21 7 0.2473 -11.9104 3.7251 22 14 0.3715 -14.4285 2.5763 23 1 1.7942 -14.8542 2.5749 24 1 -0.3037 -14.9619 3.7866 25 1 -0.3031 -14.9524 1.3615 26 7 0.9870 -5.4696 -1.4722 27 1 -0.3633 -0.0051 1.0277 28 1 -0.3633 -0.8875 -0.5182 29 1 -0.3633 0.8925 -0.5095 30 1 1.6890 2.1423 0.0005 31 1 4.1736 2.0592 0.0084 32 1 5.3046 -0.1286 -0.0024 33 1 2.0435 -3.2585 0.4991 34 1 0.5015 -2.3695 0.5027 35 1 0.6097 -2.1717 -1.9667 36 1 2.1516 -3.0608 -1.9704 37 1 -0.8255 -8.2102 -1.9915 38 1 0.9524 -8.1237 -1.9923 39 1 0.9435 -7.9169 0.4787 40 1 -0.8343 -8.0034 0.4795 41 1 -0.7245 -10.2537 -0.5572 42 1 1.0533 -10.1665 -0.5578 43 1 1.0432 -9.9598 1.9136 44 1 -0.7347 -10.0471 1.9135 45 1 0.2713 -12.3982 4.5633 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351125673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:38 Heat of formation + Delta-G solvation = 45.336028 kcal Electronic energy + Delta-G solvation = -24265.068709 eV Core-core repulsion = 20669.719137 eV Total energy + Delta-G solvation = -3595.349573 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.63776 -41.37538 -37.59607 -37.24433 -35.68137 -34.94044 -34.36086 -33.47365 -31.52784 -30.78227 -28.33033 -27.48259 -26.57876 -24.88681 -23.97970 -23.35711 -22.50281 -21.88537 -21.71361 -19.14136 -18.50229 -18.33337 -17.77809 -17.42318 -16.58048 -16.37273 -16.24450 -15.83621 -15.60173 -15.20482 -14.74773 -14.62767 -14.32719 -14.09263 -13.97033 -13.69954 -13.69078 -13.62009 -13.52880 -13.35606 -13.27074 -12.81819 -12.54542 -12.40025 -12.31496 -12.22016 -12.16739 -12.14132 -11.97088 -11.36620 -11.34827 -11.18490 -10.80806 -10.66597 -10.52045 -10.38023 -9.75102 -8.16888 -6.27647 0.03945 0.13826 0.33560 1.14484 1.42615 1.43863 1.54896 1.80652 2.43677 2.54014 2.79538 2.95613 3.16645 3.33849 3.64808 3.87072 3.88328 3.98093 4.02295 4.06249 4.08918 4.13205 4.19434 4.26213 4.50762 4.55935 4.63855 4.70413 4.73904 4.74554 4.78259 4.80968 4.84545 4.91150 4.91859 4.97470 5.17136 5.18742 5.25340 5.33318 5.33424 5.34776 5.59313 5.79376 5.82337 5.91852 6.28798 6.91240 7.04452 7.10358 7.41794 8.95023 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.001916 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.213025 B =14612.428623 C =15398.842064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.135 4.135 3 C -0.080 4.080 4 C -0.166 4.166 5 C 0.077 3.923 6 N -0.511 5.511 7 C 0.109 3.891 8 C -0.059 4.059 9 C -0.010 4.010 10 C 0.168 3.832 11 N -0.399 5.399 12 O 0.069 5.931 13 C 0.201 3.799 14 C -0.021 4.021 15 C -0.105 4.105 16 C -0.095 4.095 17 C 0.018 3.982 18 C -0.540 4.540 19 H 0.066 0.934 20 C -0.006 4.006 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.260 1.260 26 N -0.506 5.506 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.061 0.939 43 H -0.014 1.014 44 H -0.010 1.010 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 28.420 -12.553 31.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.137 4.137 3 C -0.105 4.105 4 C -0.185 4.185 5 C -0.080 4.080 6 N -0.220 5.220 7 C -0.028 4.028 8 C -0.098 4.098 9 C -0.049 4.049 10 C -0.105 4.105 11 N -0.109 5.109 12 O 0.013 5.987 13 C -0.018 4.018 14 C -0.059 4.059 15 C -0.144 4.144 16 C -0.133 4.133 17 C -0.019 4.019 18 C -0.578 4.578 19 H 0.084 0.916 20 C -0.203 4.203 21 N -0.577 5.577 22 Si 0.790 3.210 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.184 1.184 26 N -0.240 5.240 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.181 0.819 31 H 0.183 0.817 32 H 0.190 0.810 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.004 0.996 44 H 0.009 0.991 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.257 28.387 -12.404 31.061 hybrid contribution -0.165 -0.389 0.727 0.841 sum 2.092 27.998 -11.676 30.407 Atomic orbital electron populations 1.20879 0.88925 1.04086 1.03381 1.20982 0.98595 0.93381 1.00783 1.21900 0.94494 0.98661 0.95483 1.22512 0.95604 1.00133 1.00263 1.23184 1.01331 0.87762 0.95687 1.67443 1.08401 1.33388 1.12809 1.20916 0.89745 0.94578 0.97584 1.20359 0.99992 0.93556 0.95917 1.19860 0.99580 0.87429 0.98007 1.26119 0.87685 0.96550 1.00099 1.74578 1.17266 0.96645 1.22444 1.85265 1.35663 1.11848 1.65925 1.29382 0.79571 0.99727 0.93152 1.20506 1.07973 0.78006 0.99423 1.21505 1.01921 0.96555 0.94452 1.21420 1.01857 0.92750 0.97277 1.19064 0.94608 0.94834 0.93419 1.21774 1.49764 0.93491 0.92750 0.91601 1.26035 0.94997 1.03946 0.95343 1.70112 1.52025 1.37609 0.97989 0.85444 0.78402 0.79272 0.77912 1.19964 1.21074 1.18351 1.71965 1.30530 0.99897 1.21644 0.90260 0.91336 0.89237 0.81941 0.81679 0.81007 0.91349 0.89183 0.87438 0.88598 0.85073 0.85758 0.93057 0.92084 0.91363 0.91998 0.99587 0.99134 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.21 71.24 0.66 -0.65 16 2 C -0.14 -2.08 5.90 -19.77 -0.12 -2.19 16 3 C -0.08 -0.92 9.86 22.47 0.22 -0.69 16 4 C -0.17 -1.87 10.11 22.36 0.23 -1.64 16 5 C 0.08 1.25 11.18 84.69 0.95 2.20 16 6 N -0.51 -11.55 10.27 -183.89 -1.89 -13.44 16 7 C 0.11 2.23 6.03 42.54 0.26 2.48 16 8 C -0.06 -1.26 4.80 29.85 0.14 -1.12 16 9 C -0.01 -0.20 5.69 29.85 0.17 -0.03 16 10 C 0.17 4.49 7.47 138.46 1.03 5.52 16 11 N -0.40 -11.05 12.16 -60.34 -0.73 -11.78 16 12 O 0.07 1.89 11.31 74.87 0.85 2.73 16 13 C 0.20 5.34 7.77 88.38 0.69 6.02 16 14 C -0.02 -0.46 5.84 29.85 0.17 -0.29 16 15 C -0.11 -3.24 5.20 30.59 0.16 -3.08 16 16 C -0.10 -3.55 5.15 30.60 0.16 -3.39 16 17 C 0.02 0.93 4.97 29.85 0.15 1.08 16 18 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 19 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 20 C -0.01 -0.35 5.46 84.66 0.46 0.12 16 21 N -0.94 -57.72 13.29 21.45 0.28 -57.43 16 22 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 26 N -0.51 -14.82 11.55 -303.22 -3.50 -18.32 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.87 5.88 -2.39 -0.01 0.86 16 29 H 0.09 0.65 8.09 -2.38 -0.02 0.64 16 30 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 31 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 32 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 1.78 6.69 -2.39 -0.02 1.76 16 35 H 0.11 1.83 7.41 -2.39 -0.02 1.82 16 36 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 44 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 45 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -73.12 381.04 3.57 -69.55 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.98 Total: 8.25 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 5.56 Total: -25.80 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -5.84 Total: -100.98 kcal Atomic # 8 Polarization: 1.89 SS G_CDS: 0.85 Total: 2.73 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -73.12 3.57 -69.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351125673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.887 kcal (2) G-P(sol) polarization free energy of solvation -73.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds