Wall clock time and date at job start Tue Mar 31 2020 11:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30111 * 124.94848 * 2 1 4 4 C 1.35786 * 109.64072 * 180.26325 * 3 2 1 5 5 C 1.39744 * 133.59549 * 179.74249 * 4 3 2 6 6 C 1.36604 * 119.88238 * 180.02562 * 5 4 3 7 7 C 1.38779 * 120.66989 * 359.96235 * 6 5 4 8 8 C 1.37857 * 120.45040 * 0.02562 * 7 6 5 9 9 C 1.38829 * 119.68862 * 0.02562 * 8 7 6 10 10 N 1.36035 * 124.95294 * 179.84598 * 2 1 3 11 11 C 1.46505 * 126.34805 * 0.02562 * 10 2 1 12 12 C 1.52996 * 109.46917 * 269.68928 * 11 10 2 13 13 C 1.50701 * 109.46917 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99805 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00024 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99836 * 359.97438 * 15 13 12 17 17 C 1.46500 * 119.99763 * 179.97438 * 15 13 12 18 18 H 1.09000 * 109.47381 * 359.97438 * 17 15 13 19 19 C 1.53006 * 109.47249 * 239.99831 * 17 15 13 20 20 C 1.50699 * 109.46939 * 120.00179 * 17 15 13 21 21 H 1.08003 * 120.00271 * 359.97438 * 20 17 15 22 22 C 1.37879 * 120.00161 * 179.97438 * 20 17 15 23 23 N 1.31509 * 119.99895 * 0.02562 * 22 20 17 24 24 Si 1.86803 * 120.00268 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.46959 * 90.00076 * 24 22 20 26 26 H 1.48491 * 109.47193 * 210.00468 * 24 22 20 27 27 H 1.48498 * 109.46715 * 330.00553 * 24 22 20 28 28 H 1.08997 * 109.47973 * 270.15168 * 1 2 3 29 29 H 1.09004 * 109.47050 * 30.15369 * 1 2 3 30 30 H 1.09002 * 109.47130 * 150.15065 * 1 2 3 31 31 H 1.07998 * 120.05939 * 0.02562 * 5 4 3 32 32 H 1.07997 * 119.66584 * 179.97438 * 6 5 4 33 33 H 1.07995 * 119.77450 * 180.02562 * 7 6 5 34 34 H 1.07998 * 120.15210 * 179.97438 * 8 7 6 35 35 H 1.08993 * 109.47243 * 149.68379 * 11 10 2 36 36 H 1.09001 * 109.46605 * 29.68748 * 11 10 2 37 37 H 1.09004 * 109.47272 * 60.00029 * 12 11 10 38 38 H 1.09001 * 109.47336 * 299.99372 * 12 11 10 39 39 H 1.08993 * 109.47066 * 269.99701 * 16 15 13 40 40 H 1.09004 * 109.47229 * 30.00092 * 16 15 13 41 41 H 1.09000 * 109.47083 * 149.99916 * 16 15 13 42 42 H 1.09001 * 109.47002 * 60.00085 * 19 17 15 43 43 H 1.08993 * 109.46955 * 180.02562 * 19 17 15 44 44 H 1.09000 * 109.47050 * 300.00351 * 19 17 15 45 45 H 0.97006 * 120.00358 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5620 0.7080 -0.0059 5 6 4.7586 1.4298 -0.0130 6 6 5.9531 0.7671 -0.0183 7 6 5.9930 -0.6201 -0.0159 8 6 4.8252 -1.3527 -0.0087 9 6 3.6019 -0.6964 -0.0042 10 7 2.2863 -1.1150 0.0030 11 6 1.8166 -2.5027 0.0062 12 6 1.6600 -2.9847 1.4498 13 6 1.1775 -4.4124 1.4531 14 8 0.9780 -4.9874 0.4040 15 7 0.9676 -5.0501 2.6217 16 6 1.2091 -4.3556 3.8888 17 6 0.4980 -6.4378 2.6249 18 1 0.3757 -6.7823 1.5980 19 6 -0.8451 -6.5201 3.3533 20 6 1.5062 -7.3076 3.3305 21 1 2.4069 -6.8706 3.7356 22 6 1.2788 -8.6615 3.4588 23 7 0.1823 -9.1938 2.9650 24 14 2.5288 -9.7399 4.3328 25 1 2.2042 -9.8002 5.7806 26 1 2.4887 -11.1089 3.7590 27 1 3.8874 -9.1677 4.1536 28 1 -0.3635 0.0027 1.0276 29 1 -0.3633 0.8886 -0.5162 30 1 -0.3633 -0.8913 -0.5115 31 1 4.7390 2.5096 -0.0144 32 1 6.8757 1.3284 -0.0243 33 1 6.9455 -1.1292 -0.0198 34 1 4.8620 -2.4320 -0.0072 35 1 2.5406 -3.1325 -0.5107 36 1 0.8547 -2.5618 -0.5030 37 1 0.9359 -2.3548 1.9667 38 1 2.6220 -2.9256 1.9590 39 1 2.2423 -4.5128 4.1981 40 1 1.0270 -3.2887 3.7589 41 1 0.5375 -4.7484 4.6522 42 1 -1.5743 -5.8909 2.8430 43 1 -1.1942 -7.5526 3.3560 44 1 -0.7232 -6.1754 4.3801 45 1 0.0224 -10.1463 3.0549 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352057284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:25 Heat of formation + Delta-G solvation = 33.858869 kcal Electronic energy + Delta-G solvation = -25994.481255 eV Core-core repulsion = 22398.633995 eV Total energy + Delta-G solvation = -3595.847260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.28723 -39.32706 -37.56242 -35.65804 -34.76045 -32.98553 -31.70630 -31.21227 -30.04062 -28.96980 -27.64888 -26.27535 -25.31292 -24.64713 -22.22733 -22.14888 -21.07426 -19.95634 -18.45704 -17.49672 -17.33560 -16.57858 -16.00735 -15.84701 -15.51543 -15.36536 -15.20034 -14.37581 -14.19081 -14.00969 -13.59963 -13.28878 -13.25547 -13.06414 -12.86733 -12.72260 -12.48807 -12.31963 -12.03382 -11.68197 -11.65230 -11.54298 -11.42772 -11.29052 -11.13752 -10.86403 -10.78867 -10.46808 -10.34261 -10.24236 -10.01113 -9.28456 -9.13837 -8.50774 -8.37691 -8.15536 -7.73309 -6.14651 -4.23090 0.86424 1.43553 2.45036 2.66368 3.16256 3.21511 3.29062 3.31827 3.78152 3.82801 4.02018 4.32042 4.37803 4.59093 4.73570 4.88863 4.90950 5.01634 5.07280 5.16658 5.21980 5.27375 5.30841 5.34449 5.39493 5.56521 5.59614 5.65421 5.70169 5.79339 5.95475 6.07768 6.19723 6.38645 6.41955 6.45839 6.66828 6.71944 6.78930 6.95559 7.04046 7.29365 7.40749 7.63069 7.81339 7.91899 8.10093 8.39131 8.71649 8.88966 9.43777 10.90641 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018447 B = 0.003056 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.500982 B = 9159.651185 C =10131.948737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.285 3.715 3 N -0.500 5.500 4 C 0.046 3.954 5 C -0.069 4.069 6 C -0.130 4.130 7 C -0.107 4.107 8 C -0.105 4.105 9 C 0.047 3.953 10 N -0.485 5.485 11 C 0.126 3.874 12 C -0.156 4.156 13 C 0.508 3.492 14 O -0.555 6.555 15 N -0.589 5.589 16 C 0.085 3.915 17 C 0.258 3.742 18 H 0.064 0.936 19 C -0.148 4.148 20 C -0.528 4.528 21 H 0.059 0.941 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.012 0.988 43 H 0.095 0.905 44 H 0.030 0.970 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.697 18.055 -3.197 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.020 3.980 3 N -0.220 5.220 4 C -0.072 4.072 5 C -0.089 4.089 6 C -0.150 4.150 7 C -0.127 4.127 8 C -0.126 4.126 9 C -0.062 4.062 10 N -0.174 5.174 11 C 0.004 3.996 12 C -0.197 4.197 13 C 0.294 3.706 14 O -0.434 6.434 15 N -0.319 5.319 16 C -0.059 4.059 17 C 0.158 3.842 18 H 0.082 0.918 19 C -0.206 4.206 20 C -0.566 4.566 21 H 0.077 0.923 22 C -0.137 4.137 23 N -0.525 5.525 24 Si 0.726 3.274 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.031 0.969 43 H 0.113 0.887 44 H 0.049 0.951 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.148 18.235 -3.739 19.071 hybrid contribution 1.005 -1.551 0.761 1.999 sum 5.153 16.684 -2.978 17.713 Atomic orbital electron populations 1.20420 0.84360 1.04729 1.04360 1.23645 0.95802 0.80747 0.97853 1.70419 1.00855 1.27290 1.23482 1.19067 0.92102 0.90365 1.05687 1.19969 0.89223 0.99562 1.00132 1.20618 0.97353 0.94369 1.02655 1.20873 0.97238 0.93952 1.00637 1.20057 0.89161 0.99758 1.03644 1.18911 0.85482 0.95142 1.06629 1.45457 1.04561 1.07584 1.59817 1.21589 1.02884 0.77803 0.97361 1.22027 1.03884 0.96221 0.97570 1.20021 0.78810 0.87263 0.84544 1.90674 1.53427 1.68240 1.31095 1.48254 1.63688 1.15608 1.04369 1.21590 1.01563 0.95153 0.87597 1.18978 0.91718 0.74592 0.98947 0.91798 1.22105 0.97182 1.03385 0.97937 1.21302 1.05417 0.92580 1.37340 0.92307 1.24892 0.95619 0.97794 0.95430 1.69870 1.25127 1.12480 1.45060 0.86485 0.81529 0.79772 0.79574 1.20565 1.21036 1.19925 0.89275 0.88645 0.89907 0.85635 0.85565 0.85372 0.85867 0.88201 0.87855 0.88842 0.88813 0.93138 0.93004 0.90626 0.96940 0.88696 0.95069 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.17 36.00 0.37 -0.32 16 2 C 0.28 3.56 7.85 -154.83 -1.22 2.34 16 3 N -0.50 -7.23 11.27 -8.24 -0.09 -7.33 16 4 C 0.05 0.65 7.23 -84.70 -0.61 0.04 16 5 C -0.07 -0.81 10.05 -39.61 -0.40 -1.21 16 6 C -0.13 -1.28 9.96 -39.97 -0.40 -1.68 16 7 C -0.11 -1.09 10.03 -39.52 -0.40 -1.49 16 8 C -0.11 -1.27 10.05 -39.50 -0.40 -1.66 16 9 C 0.05 0.65 6.87 -83.99 -0.58 0.07 16 10 N -0.48 -6.23 2.81 -111.16 -0.31 -6.54 16 11 C 0.13 1.58 5.22 -4.04 -0.02 1.56 16 12 C -0.16 -2.08 4.58 -27.88 -0.13 -2.21 16 13 C 0.51 9.49 7.67 -10.98 -0.08 9.41 16 14 O -0.55 -12.38 15.31 5.56 0.09 -12.29 16 15 N -0.59 -11.77 2.75 -175.26 -0.48 -12.25 16 16 C 0.08 1.34 9.48 59.85 0.57 1.91 16 17 C 0.26 6.32 2.64 -69.08 -0.18 6.14 16 18 H 0.06 1.82 6.90 -51.93 -0.36 1.47 16 19 C -0.15 -3.39 8.95 37.16 0.33 -3.06 16 20 C -0.53 -13.89 8.37 -34.44 -0.29 -14.18 16 21 H 0.06 1.53 7.65 -52.48 -0.40 1.13 16 22 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 23 N -0.89 -24.56 11.32 55.43 0.63 -23.93 16 24 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.62 7.01 -51.93 -0.36 0.26 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.10 1.33 8.10 -51.93 -0.42 0.91 16 36 H 0.10 1.23 6.94 -51.93 -0.36 0.86 16 37 H 0.09 1.08 7.40 -51.93 -0.38 0.69 16 38 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.64 6.44 -51.93 -0.33 0.30 16 41 H 0.08 1.22 6.43 -51.93 -0.33 0.88 16 42 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 44 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 45 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -32.21 369.57 -9.71 -41.92 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.56 Total: 1.93 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -3.53 Total: -2.69 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.26 Total: -50.05 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.21 -9.71 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352057284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.776 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds