Wall clock time and date at job start Tue Mar 31 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30111 * 124.94848 * 2 1 4 4 C 1.35786 * 109.64072 * 180.26325 * 3 2 1 5 5 C 1.39744 * 133.59549 * 179.74249 * 4 3 2 6 6 C 1.36604 * 119.88238 * 180.02562 * 5 4 3 7 7 C 1.38779 * 120.66989 * 359.96235 * 6 5 4 8 8 C 1.37857 * 120.45040 * 0.02562 * 7 6 5 9 9 C 1.38829 * 119.68862 * 0.02562 * 8 7 6 10 10 N 1.36035 * 124.95294 * 179.84598 * 2 1 3 11 11 C 1.46505 * 126.34805 * 0.02562 * 10 2 1 12 12 C 1.52996 * 109.46917 * 269.68928 * 11 10 2 13 13 C 1.50701 * 109.46917 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99805 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00024 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99836 * 359.97438 * 15 13 12 17 17 C 1.46500 * 119.99763 * 179.97438 * 15 13 12 18 18 H 1.09000 * 109.47381 * 359.97438 * 17 15 13 19 19 C 1.53006 * 109.47249 * 239.99831 * 17 15 13 20 20 C 1.50699 * 109.46939 * 120.00179 * 17 15 13 21 21 H 1.08003 * 120.00271 * 359.97438 * 20 17 15 22 22 C 1.37879 * 120.00161 * 179.97438 * 20 17 15 23 23 N 1.31509 * 119.99895 * 0.02562 * 22 20 17 24 24 Si 1.86803 * 120.00268 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.46959 * 90.00076 * 24 22 20 26 26 H 1.48491 * 109.47193 * 210.00468 * 24 22 20 27 27 H 1.48498 * 109.46715 * 330.00553 * 24 22 20 28 28 H 1.08997 * 109.47973 * 270.15168 * 1 2 3 29 29 H 1.09004 * 109.47050 * 30.15369 * 1 2 3 30 30 H 1.09002 * 109.47130 * 150.15065 * 1 2 3 31 31 H 1.07998 * 120.05939 * 0.02562 * 5 4 3 32 32 H 1.07997 * 119.66584 * 179.97438 * 6 5 4 33 33 H 1.07995 * 119.77450 * 180.02562 * 7 6 5 34 34 H 1.07998 * 120.15210 * 179.97438 * 8 7 6 35 35 H 1.08993 * 109.47243 * 149.68379 * 11 10 2 36 36 H 1.09001 * 109.46605 * 29.68748 * 11 10 2 37 37 H 1.09004 * 109.47272 * 60.00029 * 12 11 10 38 38 H 1.09001 * 109.47336 * 299.99372 * 12 11 10 39 39 H 1.08993 * 109.47066 * 269.99701 * 16 15 13 40 40 H 1.09004 * 109.47229 * 30.00092 * 16 15 13 41 41 H 1.09000 * 109.47083 * 149.99916 * 16 15 13 42 42 H 1.09001 * 109.47002 * 60.00085 * 19 17 15 43 43 H 1.08993 * 109.46955 * 180.02562 * 19 17 15 44 44 H 1.09000 * 109.47050 * 300.00351 * 19 17 15 45 45 H 0.97006 * 120.00358 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5620 0.7080 -0.0059 5 6 4.7586 1.4298 -0.0130 6 6 5.9531 0.7671 -0.0183 7 6 5.9930 -0.6201 -0.0159 8 6 4.8252 -1.3527 -0.0087 9 6 3.6019 -0.6964 -0.0042 10 7 2.2863 -1.1150 0.0030 11 6 1.8166 -2.5027 0.0062 12 6 1.6600 -2.9847 1.4498 13 6 1.1775 -4.4124 1.4531 14 8 0.9780 -4.9874 0.4040 15 7 0.9676 -5.0501 2.6217 16 6 1.2091 -4.3556 3.8888 17 6 0.4980 -6.4378 2.6249 18 1 0.3757 -6.7823 1.5980 19 6 -0.8451 -6.5201 3.3533 20 6 1.5062 -7.3076 3.3305 21 1 2.4069 -6.8706 3.7356 22 6 1.2788 -8.6615 3.4588 23 7 0.1823 -9.1938 2.9650 24 14 2.5288 -9.7399 4.3328 25 1 2.2042 -9.8002 5.7806 26 1 2.4887 -11.1089 3.7590 27 1 3.8874 -9.1677 4.1536 28 1 -0.3635 0.0027 1.0276 29 1 -0.3633 0.8886 -0.5162 30 1 -0.3633 -0.8913 -0.5115 31 1 4.7390 2.5096 -0.0144 32 1 6.8757 1.3284 -0.0243 33 1 6.9455 -1.1292 -0.0198 34 1 4.8620 -2.4320 -0.0072 35 1 2.5406 -3.1325 -0.5107 36 1 0.8547 -2.5618 -0.5030 37 1 0.9359 -2.3548 1.9667 38 1 2.6220 -2.9256 1.9590 39 1 2.2423 -4.5128 4.1981 40 1 1.0270 -3.2887 3.7589 41 1 0.5375 -4.7484 4.6522 42 1 -1.5743 -5.8909 2.8430 43 1 -1.1942 -7.5526 3.3560 44 1 -0.7232 -6.1754 4.3801 45 1 0.0224 -10.1463 3.0549 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352057284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:24 Heat of formation + Delta-G solvation = 16.362631 kcal Electronic energy + Delta-G solvation = -25995.239949 eV Core-core repulsion = 22398.633995 eV Total energy + Delta-G solvation = -3596.605954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.19994 -40.84305 -38.41875 -37.28768 -35.86402 -34.83169 -32.68721 -32.18500 -31.35840 -30.28655 -28.44233 -27.66570 -27.29924 -25.83863 -23.15259 -23.05710 -22.65383 -20.90488 -19.97537 -18.65015 -18.34184 -18.30518 -17.43349 -17.06594 -16.76060 -16.66395 -16.22977 -15.98502 -15.21667 -15.05955 -14.68945 -14.52689 -14.44616 -14.14661 -13.95449 -13.83056 -13.70596 -13.48006 -13.38599 -13.03650 -12.94438 -12.77997 -12.72264 -12.62145 -12.43603 -12.32665 -12.24519 -12.19604 -12.14978 -11.43334 -11.18966 -10.96284 -10.74477 -10.51082 -9.37959 -9.26709 -9.05397 -8.16518 -6.32956 -0.00085 0.56204 1.39970 1.41444 1.47949 1.51438 1.70962 1.75568 2.31342 2.48631 2.91950 3.11705 3.21448 3.43916 3.58219 3.62544 3.80627 4.08128 4.17149 4.20239 4.27534 4.42830 4.46469 4.47728 4.53460 4.63677 4.66829 4.72038 4.76795 4.77686 4.88555 4.91778 5.01160 5.03132 5.05534 5.24424 5.44879 5.50518 5.58983 5.59249 5.59538 5.65017 5.97683 6.00967 6.14296 6.14893 6.74787 6.77244 6.88633 7.26785 7.43125 8.87544 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018447 B = 0.003056 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.500982 B = 9159.651185 C =10131.948737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.281 3.719 3 N -0.529 5.529 4 C 0.017 3.983 5 C -0.084 4.084 6 C -0.121 4.121 7 C -0.103 4.103 8 C -0.123 4.123 9 C 0.025 3.975 10 N -0.486 5.486 11 C 0.134 3.866 12 C -0.135 4.135 13 C 0.503 3.497 14 O -0.598 6.598 15 N -0.598 5.598 16 C 0.082 3.918 17 C 0.262 3.738 18 H 0.013 0.987 19 C -0.134 4.134 20 C -0.540 4.540 21 H 0.059 0.941 22 C 0.017 3.983 23 N -0.916 5.916 24 Si 0.962 3.038 25 H -0.268 1.268 26 H -0.286 1.286 27 H -0.271 1.271 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.137 0.863 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.024 0.976 43 H 0.067 0.933 44 H 0.047 0.953 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.014 19.604 -2.004 20.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.016 3.984 3 N -0.250 5.250 4 C -0.100 4.100 5 C -0.103 4.103 6 C -0.141 4.141 7 C -0.122 4.122 8 C -0.144 4.144 9 C -0.083 4.083 10 N -0.176 5.176 11 C 0.011 3.989 12 C -0.175 4.175 13 C 0.291 3.709 14 O -0.481 6.481 15 N -0.328 5.328 16 C -0.060 4.060 17 C 0.160 3.840 18 H 0.031 0.969 19 C -0.193 4.193 20 C -0.579 4.579 21 H 0.077 0.923 22 C -0.183 4.183 23 N -0.555 5.555 24 Si 0.787 3.213 25 H -0.194 1.194 26 H -0.212 1.212 27 H -0.196 1.196 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.155 0.845 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.143 0.857 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.140 0.860 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.043 0.957 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.481 19.825 -2.523 20.723 hybrid contribution 0.647 -1.982 0.336 2.112 sum 6.127 17.844 -2.186 18.993 Atomic orbital electron populations 1.20603 0.81847 1.05679 1.05667 1.24335 0.97142 0.80216 0.96740 1.70403 1.01404 1.28301 1.24870 1.19500 0.92729 0.91047 1.06753 1.20288 0.89226 1.00352 1.00453 1.21011 0.97978 0.94464 1.00683 1.21276 0.97746 0.94315 0.98867 1.20282 0.89427 1.00124 1.04545 1.19216 0.86169 0.95375 1.07555 1.45434 1.04540 1.07424 1.60235 1.21440 1.02866 0.77767 0.96807 1.21877 1.04692 0.92423 0.98554 1.20857 0.77645 0.89019 0.83375 1.90653 1.55074 1.69745 1.32630 1.48232 1.63784 1.14295 1.06496 1.21814 1.01674 0.97077 0.85471 1.18541 0.92417 0.77192 0.95853 0.96931 1.21891 0.96600 1.01947 0.98825 1.21580 1.05758 0.93252 1.37261 0.92317 1.25699 0.97315 0.99160 0.96150 1.70009 1.26702 1.12698 1.46095 0.85497 0.79198 0.77712 0.78868 1.19356 1.21152 1.19610 0.87644 0.87715 0.88927 0.84518 0.82300 0.82656 0.85691 0.89474 0.87203 0.86043 0.87872 0.92840 0.88858 0.90937 0.95734 0.91455 0.93438 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.17 71.23 0.72 -0.48 16 2 C 0.28 6.71 7.85 137.92 1.08 7.80 16 3 N -0.53 -15.00 11.27 -179.97 -2.03 -17.03 16 4 C 0.02 0.48 7.23 39.45 0.29 0.77 16 5 C -0.08 -1.85 10.05 22.25 0.22 -1.62 16 6 C -0.12 -2.09 9.96 22.02 0.22 -1.87 16 7 C -0.10 -1.86 10.03 22.31 0.22 -1.64 16 8 C -0.12 -2.83 10.05 22.32 0.22 -2.61 16 9 C 0.03 0.67 6.87 38.86 0.27 0.94 16 10 N -0.49 -12.05 2.81 -505.61 -1.42 -13.47 16 11 C 0.13 3.25 5.22 86.38 0.45 3.70 16 12 C -0.13 -3.34 4.58 29.85 0.14 -3.21 16 13 C 0.50 18.58 7.67 87.66 0.67 19.25 16 14 O -0.60 -27.41 15.31 -3.04 -0.05 -27.46 16 15 N -0.60 -23.56 2.75 -826.79 -2.28 -25.83 16 16 C 0.08 2.40 9.48 127.77 1.21 3.61 16 17 C 0.26 13.09 2.64 44.25 0.12 13.21 16 18 H 0.01 0.76 6.90 -2.39 -0.02 0.74 16 19 C -0.13 -6.20 8.95 71.98 0.64 -5.56 16 20 C -0.54 -28.65 8.37 25.60 0.21 -28.43 16 21 H 0.06 3.04 7.65 -2.91 -0.02 3.01 16 22 C 0.02 0.89 5.30 84.66 0.45 1.34 16 23 N -0.92 -51.81 11.32 21.45 0.24 -51.56 16 24 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 28 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.21 7.01 -2.39 -0.02 1.20 16 31 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.09 2.34 8.10 -2.39 -0.02 2.32 16 36 H 0.11 2.52 6.94 -2.39 -0.02 2.50 16 37 H 0.12 2.37 7.40 -2.39 -0.02 2.35 16 38 H 0.10 2.44 8.11 -2.39 -0.02 2.42 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.09 1.94 6.44 -2.39 -0.02 1.93 16 41 H 0.07 2.17 6.43 -2.39 -0.02 2.15 16 42 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 3.50 6.07 -2.39 -0.01 3.49 16 44 H 0.05 1.99 6.66 -2.39 -0.02 1.97 16 45 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 Total: -1.00 -72.46 369.57 4.64 -67.83 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.99 Total: 18.02 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 7.15 Total: 5.19 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -5.48 Total: -107.89 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.05 Total: -27.46 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -72.46 4.64 -67.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352057284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.191 kcal (2) G-P(sol) polarization free energy of solvation -72.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds