Wall clock time and date at job start Tue Mar 31 2020 11:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35318 * 126.12670 * 2 1 4 4 C 1.39863 * 107.92410 * 180.14992 * 3 2 1 5 5 C 1.50703 * 125.90216 * 179.86410 * 4 3 2 6 6 N 1.46502 * 109.47002 * 94.71317 * 5 4 3 7 7 C 1.39663 * 119.99806 * 180.02562 * 6 5 4 8 8 C 1.38973 * 120.04649 * 0.02562 * 7 6 5 9 9 C 1.38116 * 120.03003 * 179.97438 * 8 7 6 10 10 C 1.38216 * 120.13578 * 359.74695 * 9 8 7 11 11 C 1.38779 * 120.08401 * 0.51068 * 10 9 8 12 12 O 1.35897 * 120.00949 * 179.76812 * 11 10 9 13 13 C 1.42898 * 117.00481 * 359.71829 * 12 11 10 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46838 * 89.99826 * 19 17 15 21 21 H 1.48497 * 109.47419 * 209.99978 * 19 17 15 22 22 H 1.48499 * 109.47011 * 330.00539 * 19 17 15 23 23 C 1.38609 * 119.96517 * 359.48769 * 11 10 9 24 24 N 1.30838 * 108.20038 * 359.59774 * 4 3 2 25 25 N 1.34945 * 126.12979 * 179.70956 * 2 1 3 26 26 C 1.46501 * 126.03830 * 359.97438 * 25 2 1 27 27 H 1.09001 * 109.47105 * 270.29072 * 1 2 3 28 28 H 1.08997 * 109.47181 * 30.29616 * 1 2 3 29 29 H 1.09004 * 109.46747 * 150.29326 * 1 2 3 30 30 H 1.08002 * 126.03794 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.46841 * 334.71438 * 5 4 3 32 32 H 1.09000 * 109.46773 * 214.71082 * 5 4 3 33 33 H 0.97001 * 119.99801 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.98294 * 0.02562 * 8 7 6 35 35 H 1.08007 * 119.92769 * 180.02562 * 9 8 7 36 36 H 1.07991 * 119.95689 * 180.26971 * 10 9 8 37 37 H 1.09002 * 109.47259 * 300.00417 * 13 12 11 38 38 H 1.09001 * 109.47074 * 60.00439 * 13 12 11 39 39 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 40 40 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 41 41 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 42 42 H 1.08006 * 120.06150 * 180.23058 * 23 11 10 43 43 H 1.08995 * 109.47234 * 270.02557 * 26 25 2 44 44 H 1.09001 * 109.46932 * 30.02734 * 26 25 2 45 45 H 1.09004 * 109.47133 * 150.02082 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6561 -0.0035 5 6 4.8543 1.5397 -0.0076 6 7 5.3203 1.7350 1.3675 7 6 6.4454 2.5237 1.6181 8 6 7.1231 3.1241 0.5638 9 6 8.2354 3.9044 0.8121 10 6 8.6742 4.0946 2.1089 11 6 8.0044 3.4932 3.1652 12 8 8.4400 3.6775 4.4392 13 6 9.5968 4.4972 4.6173 14 6 9.9338 4.5871 6.1070 15 6 11.1534 5.4521 6.2949 16 1 11.6393 5.8940 5.4375 17 6 11.6484 5.6803 7.5613 18 7 11.0563 5.1426 8.6054 19 14 13.1606 6.7520 7.7942 20 1 12.7426 8.1659 7.9722 21 1 13.9064 6.3012 8.9965 22 1 14.0347 6.6411 6.5988 23 6 6.8878 2.7094 2.9205 24 7 3.6334 -0.6523 0.0032 25 7 2.3027 -1.0899 0.0055 26 6 1.8540 -2.4845 0.0131 27 1 -0.3633 0.0052 1.0277 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3633 -0.8927 -0.5093 30 1 1.9740 2.1211 0.0004 31 1 4.6025 2.5051 -0.4465 32 1 5.6422 1.0679 -0.5947 33 1 4.8470 1.3172 2.1040 34 1 6.7795 2.9810 -0.4500 35 1 8.7606 4.3705 -0.0085 36 1 9.5416 4.7089 2.3000 37 1 10.4384 4.0596 4.0804 38 1 9.3977 5.4960 4.2286 39 1 9.0923 5.0245 6.6441 40 1 10.1330 3.5883 6.4954 41 1 11.4043 5.3034 9.4965 42 1 6.3632 2.2436 3.7417 43 1 1.7427 -2.8248 1.0426 44 1 0.8956 -2.5606 -0.5004 45 1 2.5900 -3.1057 -0.4974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362827104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:27 Heat of formation + Delta-G solvation = 35.336058 kcal Electronic energy + Delta-G solvation = -24100.310558 eV Core-core repulsion = 20504.527354 eV Total energy + Delta-G solvation = -3595.783204 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.32111 -40.99545 -39.06325 -36.50782 -35.42472 -34.31696 -32.91528 -32.55829 -31.28810 -30.07521 -28.28074 -27.92846 -26.96733 -25.86439 -23.86532 -23.20546 -21.79731 -21.41122 -20.41072 -19.34974 -18.32187 -17.70300 -17.18959 -16.89399 -16.79078 -16.72541 -16.51647 -16.38366 -15.44768 -15.37350 -14.99964 -14.53159 -14.37527 -14.31134 -14.11672 -14.06626 -13.96083 -13.61386 -13.35414 -13.19872 -13.16302 -13.05761 -12.80642 -12.63089 -12.51534 -12.41445 -11.95379 -11.71630 -11.55445 -11.53833 -11.36711 -10.86269 -10.60930 -10.22516 -9.51370 -9.20460 -8.36169 -8.25538 -6.39316 0.59236 0.71267 0.77120 1.41618 1.44388 1.50462 1.55624 1.56906 2.26594 2.47093 2.85405 2.98417 3.08674 3.43256 3.67387 3.98164 4.01896 4.24200 4.27436 4.30787 4.31515 4.34618 4.37586 4.42489 4.49329 4.55025 4.61259 4.70283 4.74767 4.76565 4.78944 4.83602 5.00325 5.07209 5.23431 5.29544 5.34758 5.48206 5.53561 5.56932 5.65210 5.68707 5.77838 6.08285 6.09475 6.38126 6.61492 6.66320 6.72096 6.75609 7.30670 8.87713 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029091 B = 0.001792 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.273361 B =15621.419199 C =16142.429009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.083 3.917 3 C -0.279 4.279 4 C 0.048 3.952 5 C 0.214 3.786 6 N -0.736 5.736 7 C 0.255 3.745 8 C -0.235 4.235 9 C -0.029 4.029 10 C -0.280 4.280 11 C 0.152 3.848 12 O -0.343 6.343 13 C 0.086 3.914 14 C 0.027 3.973 15 C -0.546 4.546 16 H 0.071 0.929 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.978 3.022 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.253 4.253 24 N -0.322 5.322 25 N -0.376 5.376 26 C 0.089 3.911 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.399 0.601 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.123 0.877 37 H 0.059 0.941 38 H 0.061 0.939 39 H -0.002 1.002 40 H -0.003 1.003 41 H 0.267 0.733 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.118 0.882 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.261 -11.624 -24.334 35.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C -0.308 4.308 4 C -0.117 4.117 5 C 0.089 3.911 6 N -0.365 5.365 7 C 0.150 3.850 8 C -0.257 4.257 9 C -0.048 4.048 10 C -0.300 4.300 11 C 0.106 3.894 12 O -0.257 6.257 13 C 0.012 3.988 14 C -0.010 4.010 15 C -0.584 4.584 16 H 0.090 0.910 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.801 3.199 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.183 1.183 23 C -0.277 4.277 24 N -0.146 5.146 25 N -0.159 5.159 26 C -0.051 4.051 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.179 0.821 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.234 0.766 34 H 0.167 0.833 35 H 0.171 0.829 36 H 0.141 0.859 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.075 0.925 42 H 0.135 0.865 43 H 0.102 0.898 44 H 0.136 0.864 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.727 -12.965 -24.189 35.633 hybrid contribution 0.284 0.850 1.125 1.438 sum -22.443 -12.115 -23.064 34.386 Atomic orbital electron populations 1.20613 0.84215 1.05449 1.04501 1.21767 0.96534 0.86589 0.99638 1.21446 0.91141 1.00397 1.17832 1.22293 0.96246 0.91499 1.01674 1.19574 0.90700 0.97277 0.83573 1.44556 1.29473 1.54580 1.07935 1.17382 0.86538 0.89163 0.91895 1.20783 1.00213 1.06219 0.98502 1.20985 0.94193 0.94155 0.95456 1.21242 1.05458 1.09673 0.93675 1.19118 0.93090 0.93642 0.83557 1.86053 1.46489 1.67548 1.25655 1.22848 0.84399 0.92683 0.98886 1.18981 0.95974 0.96205 0.89845 1.21408 1.12233 1.31036 0.93694 0.91037 1.26073 1.00967 0.97374 0.95408 1.70133 1.42355 1.45391 0.99205 0.85253 0.78095 0.78402 0.78107 1.19470 1.20649 1.18291 1.19735 1.01260 1.10203 0.96464 1.77310 0.98484 1.13129 1.25626 1.48832 1.03079 1.07701 1.56291 1.22204 1.02369 0.75968 1.04557 0.89160 0.88300 0.89212 0.82139 0.88314 0.90799 0.76635 0.83322 0.82912 0.85863 0.92252 0.92097 0.98372 0.98445 0.92468 0.86461 0.89808 0.86357 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.12 71.24 0.72 0.31 16 2 C 0.08 1.12 6.93 41.41 0.29 1.41 16 3 C -0.28 -4.59 10.65 21.99 0.23 -4.35 16 4 C 0.05 0.95 6.59 43.10 0.28 1.24 16 5 C 0.21 3.89 5.47 85.63 0.47 4.35 16 6 N -0.74 -16.64 5.72 -343.18 -1.96 -18.60 16 7 C 0.25 6.98 6.65 38.20 0.25 7.24 16 8 C -0.23 -5.65 9.31 22.42 0.21 -5.44 16 9 C -0.03 -0.76 10.03 22.24 0.22 -0.53 16 10 C -0.28 -9.31 9.04 22.39 0.20 -9.11 16 11 C 0.15 5.88 6.68 22.49 0.15 6.03 16 12 O -0.34 -15.76 10.13 -92.39 -0.94 -16.70 16 13 C 0.09 4.01 4.68 71.98 0.34 4.35 16 14 C 0.03 1.55 5.34 29.85 0.16 1.71 16 15 C -0.55 -31.72 9.11 25.60 0.23 -31.48 16 16 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 17 C 0.00 0.01 5.46 84.65 0.46 0.47 16 18 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 19 Si 0.98 44.37 29.54 68.60 2.03 46.40 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 23 C -0.25 -8.62 9.83 22.49 0.22 -8.40 16 24 N -0.32 -7.25 12.58 -47.39 -0.60 -7.84 16 25 N -0.38 -6.06 4.01 -356.03 -1.43 -7.49 16 26 C 0.09 0.66 11.27 127.77 1.44 2.10 16 27 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.09 0.07 7.08 -2.38 -0.02 0.05 16 30 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.10 1.42 7.95 -2.39 -0.02 1.40 16 32 H 0.07 1.34 7.95 -2.39 -0.02 1.32 16 33 H 0.40 9.22 8.47 -92.71 -0.79 8.43 16 34 H 0.15 2.61 6.73 -2.91 -0.02 2.59 16 35 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 36 H 0.12 4.07 6.29 -2.91 -0.02 4.05 16 37 H 0.06 2.61 7.67 -2.39 -0.02 2.59 16 38 H 0.06 2.66 7.65 -2.39 -0.02 2.65 16 39 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.12 3.99 8.06 -2.91 -0.02 3.96 16 43 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.12 0.09 7.05 -2.39 -0.02 0.07 16 45 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -76.77 379.66 3.48 -73.29 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.21 Total: 18.68 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: 5.89 Total: -30.13 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -3.70 Total: -91.54 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.94 Total: -16.70 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -76.77 3.48 -73.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362827104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.621 kcal (2) G-P(sol) polarization free energy of solvation -76.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds