Wall clock time and date at job start Tue Mar 31 2020 10:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38375 * 119.85768 * 2 1 4 4 C 1.37947 * 120.14218 * 179.72216 * 3 2 1 5 5 C 1.39579 * 119.85472 * 0.55039 * 4 3 2 6 6 C 1.47850 * 120.14224 * 179.75238 * 5 4 3 7 7 N 1.31236 * 126.37735 * 179.69989 * 6 5 4 8 8 N 1.28660 * 109.24823 * 179.97438 * 7 6 5 9 9 C 1.30389 * 109.52479 * 359.97438 * 8 7 6 10 10 C 1.50699 * 126.18560 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.46959 * 165.02474 * 10 9 8 12 12 C 1.52997 * 109.47078 * 285.02386 * 10 9 8 13 13 N 1.46899 * 109.47244 * 45.02595 * 10 9 8 14 14 C 1.46894 * 111.00118 * 56.04174 * 13 10 9 15 15 C 1.46902 * 110.99980 * 180.02562 * 13 10 9 16 16 C 1.50701 * 109.46727 * 170.00105 * 15 13 10 17 17 H 1.07995 * 120.00424 * 359.97438 * 16 15 13 18 18 C 1.37877 * 119.99471 * 179.97438 * 16 15 13 19 19 N 1.31511 * 120.00547 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99721 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47042 * 90.00173 * 20 18 16 22 22 H 1.48498 * 109.47309 * 209.99770 * 20 18 16 23 23 H 1.48499 * 109.47532 * 329.99944 * 20 18 16 24 24 O 1.34412 * 107.62621 * 0.26196 * 9 8 7 25 25 C 1.39541 * 119.71390 * 359.47051 * 5 4 3 26 26 C 1.37991 * 119.85160 * 0.25480 * 25 5 4 27 27 C 1.50700 * 119.92675 * 180.02562 * 26 25 5 28 28 H 1.09000 * 109.47000 * 269.98353 * 1 2 3 29 29 H 1.09002 * 109.46855 * 29.98100 * 1 2 3 30 30 H 1.08994 * 109.47227 * 149.98026 * 1 2 3 31 31 H 1.07994 * 119.93186 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.07477 * 180.27450 * 4 3 2 33 33 H 1.08996 * 109.47853 * 300.00179 * 12 10 9 34 34 H 1.09002 * 109.47153 * 60.00207 * 12 10 9 35 35 H 1.08998 * 109.47533 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.46987 * 60.00336 * 14 13 10 37 37 H 1.09004 * 109.47461 * 180.02562 * 14 13 10 38 38 H 1.08999 * 109.47654 * 300.00445 * 14 13 10 39 39 H 1.08997 * 109.46547 * 289.99793 * 15 13 10 40 40 H 1.09000 * 109.47275 * 50.00112 * 15 13 10 41 41 H 0.96999 * 120.00459 * 180.02562 * 19 18 16 42 42 H 1.07992 * 120.07463 * 180.23251 * 25 5 4 43 43 H 1.08998 * 109.46972 * 89.99562 * 27 26 25 44 44 H 1.09000 * 109.47299 * 210.00214 * 27 26 25 45 45 H 1.09008 * 109.47101 * 329.99931 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5753 1.2069 0.0058 5 6 4.2762 -0.0001 0.0000 6 6 5.7547 -0.0002 0.0006 7 7 6.5330 -1.0568 0.0012 8 7 7.7626 -0.6779 0.0011 9 6 7.8171 0.6249 -0.0001 10 6 9.0696 1.4629 -0.0001 11 1 8.8195 2.4898 -0.2667 12 6 9.7005 1.4371 1.3935 13 7 10.0215 0.9208 -0.9787 14 6 9.4160 0.8427 -2.3147 15 6 11.2576 1.7141 -1.0059 16 6 12.2965 0.9972 -1.8293 17 1 12.0621 0.0471 -2.2862 18 6 13.5462 1.5543 -1.9992 19 7 13.8316 2.7114 -1.4432 20 14 14.8342 0.6653 -3.0191 21 1 14.7241 1.0926 -4.4371 22 1 16.1876 0.9971 -2.5059 23 1 14.6149 -0.8004 -2.9253 24 8 6.5542 1.0851 0.0051 25 6 3.5754 -1.2068 -0.0004 26 6 2.1955 -1.1998 -0.0004 27 6 1.4370 -2.5020 -0.0002 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6525 2.1333 0.0004 32 1 4.1119 2.1442 0.0103 33 1 8.9942 1.8393 2.1198 34 1 9.9505 0.4102 1.6602 35 1 10.6066 2.0429 1.3935 36 1 9.1145 1.8398 -2.6358 37 1 10.1420 0.4377 -3.0197 38 1 8.5419 0.1924 -2.2802 39 1 11.0536 2.6895 -1.4476 40 1 11.6274 1.8458 0.0110 41 1 14.7106 3.1035 -1.5630 42 1 4.1118 -2.1441 -0.0010 43 1 1.2542 -2.8158 1.0275 44 1 0.4852 -2.3681 -0.5141 45 1 2.0233 -3.2640 -0.5140 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363943876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:15 Heat of formation + Delta-G solvation = 43.178146 kcal Electronic energy + Delta-G solvation = -25377.523330 eV Core-core repulsion = 21782.080185 eV Total energy + Delta-G solvation = -3595.443146 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.32491 -40.63083 -39.12608 -37.34299 -35.32092 -34.79955 -33.41569 -32.87448 -31.10640 -29.49862 -28.45399 -27.64907 -26.40741 -25.80975 -24.61640 -23.75139 -22.93713 -21.68330 -21.37488 -18.91191 -18.52583 -18.36713 -17.53531 -16.87348 -16.64152 -16.50898 -16.22985 -15.91415 -15.60717 -15.20047 -14.72899 -14.64272 -14.18629 -14.14514 -13.72932 -13.61844 -13.56426 -13.51811 -13.32204 -13.18950 -13.05181 -12.87965 -12.84606 -12.80652 -12.71771 -12.54592 -12.35406 -12.23799 -11.98524 -11.91101 -11.84755 -11.37518 -11.03499 -10.58737 -9.85820 -9.41204 -9.21098 -8.20508 -6.28408 -0.65690 0.29110 0.51651 0.92245 1.33042 1.42138 1.43368 1.55109 2.40715 2.57511 2.63412 2.96757 3.13603 3.31318 3.67432 3.81920 3.83914 3.92269 3.94177 4.06083 4.13076 4.19792 4.25442 4.34331 4.38106 4.48219 4.62325 4.67348 4.73460 4.76633 4.77405 4.79906 4.93016 4.93860 4.96959 5.13900 5.14880 5.19027 5.24692 5.28493 5.31853 5.35786 5.59871 5.62986 5.88858 5.98891 6.14419 6.44068 6.84232 7.15244 7.39768 8.90259 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.032453 B = 0.002347 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.580989 B =11926.458007 C =12187.536432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.059 4.059 3 C -0.116 4.116 4 C -0.092 4.092 5 C -0.051 4.051 6 C 0.206 3.794 7 N -0.307 5.307 8 N -0.284 5.284 9 C 0.184 3.816 10 C 0.176 3.824 11 H 0.074 0.926 12 C -0.134 4.134 13 N -0.533 5.533 14 C 0.044 3.956 15 C 0.207 3.793 16 C -0.524 4.524 17 H 0.058 0.942 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.965 3.035 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.270 1.270 24 O -0.223 6.223 25 C -0.075 4.075 26 C -0.093 4.093 27 C -0.117 4.117 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.160 0.840 32 H 0.135 0.865 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.022 0.978 37 H 0.070 0.930 38 H 0.046 0.954 39 H -0.026 1.026 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.131 0.869 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.876 -2.788 4.539 30.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.060 4.060 3 C -0.134 4.134 4 C -0.112 4.112 5 C -0.053 4.053 6 C -0.002 4.002 7 N -0.154 5.154 8 N -0.130 5.130 9 C -0.028 4.028 10 C 0.066 3.934 11 H 0.092 0.908 12 C -0.192 4.192 13 N -0.259 5.259 14 C -0.105 4.105 15 C 0.082 3.918 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.568 5.568 20 Si 0.790 3.210 21 H -0.199 1.199 22 H -0.206 1.206 23 H -0.195 1.195 24 O -0.103 6.103 25 C -0.094 4.094 26 C -0.093 4.093 27 C -0.173 4.173 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.178 0.822 32 H 0.152 0.848 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.064 0.936 39 H -0.008 1.008 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.149 0.851 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.190 -4.394 4.713 29.893 hybrid contribution 0.934 1.757 -0.811 2.149 sum -28.256 -2.637 3.902 28.646 Atomic orbital electron populations 1.21033 0.88201 1.04573 1.03890 1.20444 0.98246 0.91885 0.95381 1.21289 0.92465 0.99485 1.00167 1.21395 0.95609 0.96312 0.97855 1.17386 0.81435 0.96644 1.09858 1.26085 0.95289 0.79518 0.99315 1.74700 0.96098 1.25716 1.18843 1.74456 1.11673 1.09956 1.16928 1.28039 0.84674 0.91469 0.98577 1.20100 0.83132 0.92975 0.97227 0.90800 1.21868 1.01600 1.03704 0.92039 1.62029 1.04596 1.53322 1.05988 1.22161 0.98488 0.98847 0.90988 1.19583 0.85121 0.89885 0.97195 1.21384 0.97374 1.06114 1.31382 0.92390 1.25771 1.00377 0.95759 0.97161 1.70040 1.22693 1.18525 1.45571 0.85451 0.77992 0.78897 0.78688 1.19918 1.20557 1.19477 1.84807 1.17277 1.37863 1.70327 1.21131 0.94450 0.96378 0.97472 1.19996 0.92009 0.97194 1.00089 1.20956 1.00521 0.92206 1.03660 0.89369 0.89938 0.89588 0.82211 0.84754 0.89698 0.91870 0.90231 0.95968 0.91107 0.93567 1.00787 0.94815 0.92576 0.85142 0.89788 0.88866 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 9.59 71.24 0.68 0.02 16 2 C -0.06 -0.74 5.89 -19.81 -0.12 -0.85 16 3 C -0.12 -1.59 9.68 22.23 0.22 -1.38 16 4 C -0.09 -1.80 9.73 22.52 0.22 -1.58 16 5 C -0.05 -1.28 5.87 -20.10 -0.12 -1.40 16 6 C 0.21 6.65 7.99 87.33 0.70 7.34 16 7 N -0.31 -11.47 11.92 -166.30 -1.98 -13.45 16 8 N -0.28 -11.60 11.90 -165.33 -1.97 -13.57 16 9 C 0.18 6.85 5.72 88.32 0.50 7.35 16 10 C 0.18 6.61 2.62 44.17 0.12 6.72 16 11 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 12 C -0.13 -4.54 8.97 71.98 0.65 -3.90 16 13 N -0.53 -23.92 4.61 -906.06 -4.18 -28.10 16 14 C 0.04 1.84 9.07 127.69 1.16 3.00 16 15 C 0.21 10.68 4.54 85.56 0.39 11.07 16 16 C -0.52 -29.56 8.46 25.60 0.22 -29.34 16 17 H 0.06 3.29 7.12 -2.91 -0.02 3.27 16 18 C 0.01 0.45 5.46 84.66 0.46 0.91 16 19 N -0.93 -54.33 13.29 21.45 0.28 -54.05 16 20 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 24 O -0.22 -7.49 10.67 -8.47 -0.09 -7.58 16 25 C -0.07 -1.61 9.35 22.53 0.21 -1.40 16 26 C -0.09 -1.42 5.87 -19.90 -0.12 -1.54 16 27 C -0.12 -1.11 9.60 71.24 0.68 -0.43 16 28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.08 0.29 8.08 -2.39 -0.02 0.27 16 30 H 0.09 0.31 5.93 -2.39 -0.01 0.29 16 31 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 32 H 0.13 2.46 7.94 -2.91 -0.02 2.44 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.08 2.82 6.20 -2.39 -0.01 2.81 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 3.15 6.76 -2.38 -0.02 3.14 16 38 H 0.05 1.88 6.74 -2.39 -0.02 1.86 16 39 H -0.03 -1.40 8.12 -2.39 -0.02 -1.42 16 40 H 0.03 1.80 5.83 -2.39 -0.01 1.78 16 41 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.13 2.95 7.86 -2.91 -0.02 2.93 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.09 0.51 5.93 -2.39 -0.01 0.49 16 45 H 0.07 0.69 8.08 -2.38 -0.02 0.67 16 Total: -1.00 -68.97 371.44 0.94 -68.02 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.00 Total: 7.67 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 5.85 Total: -5.40 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -7.84 Total: -109.17 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.09 Total: -7.58 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.97 0.94 -68.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363943876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.203 kcal (2) G-P(sol) polarization free energy of solvation -68.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds