Wall clock time and date at job start Tue Mar 31 2020 10:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47157 * 2 1 4 4 N 1.46499 * 109.47446 * 59.99602 * 3 2 1 5 5 S 1.65598 * 120.00379 * 165.00021 * 4 3 2 6 6 O 1.42100 * 104.27506 * 308.93339 * 5 4 3 7 7 O 1.42100 * 104.27809 * 181.07341 * 5 4 3 8 8 C 1.81403 * 104.44862 * 65.00217 * 5 4 3 9 9 C 1.52995 * 109.47050 * 182.00078 * 8 5 4 10 10 C 1.50710 * 115.55124 * 294.71747 * 9 8 5 11 11 H 1.07999 * 119.99951 * 95.18561 * 10 9 8 12 12 C 1.37877 * 119.99383 * 274.91562 * 10 9 8 13 13 N 1.31511 * 120.00562 * 6.47087 * 12 10 9 14 14 Si 1.86803 * 119.99653 * 186.46914 * 12 10 9 15 15 H 1.48500 * 109.46975 * 90.00093 * 14 12 10 16 16 H 1.48496 * 109.47633 * 210.00093 * 14 12 10 17 17 H 1.48505 * 109.47192 * 330.00237 * 14 12 10 18 18 C 1.52994 * 117.50251 * 80.38697 * 9 8 5 19 19 C 1.52993 * 117.49983 * 149.04761 * 9 8 5 20 20 C 1.52998 * 109.46779 * 119.99761 * 2 1 3 21 21 C 1.53004 * 109.47145 * 60.00357 * 20 2 1 22 22 C 1.52997 * 109.47188 * 59.99916 * 21 20 2 23 23 C 1.52999 * 109.46963 * 299.99739 * 22 21 20 24 24 C 1.52999 * 109.46977 * 239.99921 * 2 1 3 25 25 H 1.09003 * 109.47160 * 60.00289 * 1 2 3 26 26 H 1.08998 * 109.46891 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47165 * 300.00041 * 1 2 3 28 28 H 1.09008 * 109.47263 * 300.00132 * 3 2 1 29 29 H 1.08998 * 109.47228 * 179.97438 * 3 2 1 30 30 H 0.97003 * 120.00101 * 345.00682 * 4 3 2 31 31 H 1.08995 * 109.46686 * 62.00104 * 8 5 4 32 32 H 1.08999 * 109.47201 * 301.99827 * 8 5 4 33 33 H 0.97000 * 119.99782 * 185.08338 * 13 12 10 34 34 H 1.09005 * 117.50108 * 215.00735 * 18 9 8 35 35 H 1.09008 * 117.49894 * 0.02562 * 18 9 8 36 36 H 1.08997 * 117.50145 * 359.97364 * 19 9 8 37 37 H 1.09005 * 117.50385 * 144.97306 * 19 9 8 38 38 H 1.08998 * 109.46907 * 180.02562 * 20 2 1 39 39 H 1.09002 * 109.47433 * 300.00033 * 20 2 1 40 40 H 1.08998 * 109.47061 * 299.99713 * 21 20 2 41 41 H 1.09003 * 109.46914 * 179.97438 * 21 20 2 42 42 H 1.09003 * 109.46878 * 180.02562 * 22 21 20 43 43 H 1.08998 * 109.47285 * 59.99934 * 22 21 20 44 44 H 1.08998 * 109.47280 * 300.00199 * 23 22 21 45 45 H 1.09002 * 109.47250 * 180.02562 * 23 22 21 46 46 H 1.08994 * 109.47115 * 59.99992 * 24 2 1 47 47 H 1.08998 * 109.46779 * 180.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.5517 2.1331 1.1961 5 16 2.2317 3.5707 1.6579 6 8 3.6281 3.3078 1.6765 7 8 1.5363 3.9216 2.8464 8 6 1.8180 4.7189 0.3158 9 6 2.4404 6.0864 0.6046 10 6 1.9012 6.8032 1.8157 11 1 2.4095 6.7174 2.7647 12 6 0.7622 7.5731 1.7107 13 7 0.0749 7.5811 0.5895 14 14 0.1953 8.6047 3.1611 15 1 0.8139 9.9524 3.0818 16 1 -1.2835 8.7362 3.1273 17 1 0.6048 7.9458 4.4274 18 6 3.9232 6.2714 0.2763 19 6 2.8569 6.9405 -0.5945 20 6 2.0400 -0.7212 1.2493 21 6 1.5300 -2.1637 1.2493 22 6 2.0401 -2.8850 0.0001 23 6 1.5301 -2.1638 -1.2491 24 6 2.0400 -0.7213 -1.2492 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 0.8300 1.7484 1.7177 31 1 0.7351 4.8201 0.2452 32 1 2.2091 4.3333 -0.6258 33 1 -0.6834 8.1777 0.4898 34 1 4.5088 6.9114 0.9362 35 1 4.4554 5.4189 -0.1460 36 1 2.6880 6.5280 -1.5892 37 1 2.7406 8.0208 -0.5077 38 1 3.1299 -0.7208 1.2495 39 1 1.6766 -0.2074 2.1393 40 1 0.4400 -2.1638 1.2492 41 1 1.8937 -2.6777 2.1391 42 1 1.6763 -3.9126 -0.0001 43 1 3.1300 -2.8850 0.0001 44 1 0.4401 -2.1638 -1.2492 45 1 1.8931 -2.6779 -2.1391 46 1 1.6767 -0.2075 -2.1392 47 1 3.1300 -0.7216 -1.2490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451312844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:44 Heat of formation + Delta-G solvation = -79.630463 kcal Electronic energy + Delta-G solvation = -25831.658543 eV Core-core repulsion = 22334.041217 eV Total energy + Delta-G solvation = -3497.617326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.80727 -36.74237 -36.20551 -35.19680 -34.97313 -32.02077 -31.53035 -30.85547 -28.14374 -27.21244 -25.44123 -25.36489 -22.77112 -21.23807 -21.18705 -19.71234 -18.62547 -18.48675 -17.04266 -16.43816 -16.08332 -15.17304 -15.13686 -14.81752 -14.67196 -14.59495 -14.27566 -14.04853 -13.79744 -13.16227 -13.08260 -12.95601 -12.58077 -12.25923 -11.91693 -11.81995 -11.73253 -11.67131 -11.26365 -11.22015 -11.15660 -11.13813 -11.08863 -11.02022 -10.88504 -10.57404 -10.44830 -10.33356 -10.15055 -10.13140 -10.08652 -9.69739 -9.14142 -8.92472 -8.53686 -8.08198 -6.12806 -4.22718 1.13257 3.30927 3.37372 3.45731 3.50789 4.39801 4.40724 4.49367 4.56352 4.62667 4.91901 4.99220 5.05262 5.10636 5.16725 5.20066 5.22831 5.23898 5.38400 5.46233 5.51395 5.55735 5.62685 5.74798 5.76935 5.81152 5.86551 5.90598 5.97011 5.99680 6.02937 6.04678 6.16906 6.18967 6.26451 6.34058 6.40017 6.42161 6.62617 6.72233 6.99530 7.25131 7.34238 7.39898 7.82267 8.21572 8.83495 9.48747 10.95573 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.003632 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.513023 B = 7707.598437 C = 7960.744809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C 0.125 3.875 4 N -1.130 6.130 5 S 2.607 3.393 6 O -0.976 6.976 7 O -0.951 6.951 8 C -0.554 4.554 9 C 0.042 3.958 10 C -0.511 4.511 11 H 0.069 0.931 12 C 0.080 3.920 13 N -0.875 5.875 14 Si 0.890 3.110 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.267 1.267 18 C -0.210 4.210 19 C -0.140 4.140 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.109 4.109 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.410 0.590 31 H 0.134 0.866 32 H 0.096 0.904 33 H 0.262 0.738 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.838 -18.231 -5.311 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.066 4.066 3 C -0.002 4.002 4 N -0.888 5.888 5 S 2.704 3.296 6 O -0.966 6.966 7 O -0.941 6.941 8 C -0.687 4.687 9 C 0.040 3.960 10 C -0.548 4.548 11 H 0.087 0.913 12 C -0.124 4.124 13 N -0.511 5.511 14 Si 0.717 3.283 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.191 1.191 18 C -0.247 4.247 19 C -0.179 4.179 20 C -0.148 4.148 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.148 4.148 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.244 0.756 31 H 0.152 0.848 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.268 -18.020 -4.662 18.656 hybrid contribution -1.084 0.627 0.117 1.258 sum 0.183 -17.392 -4.545 17.977 Atomic orbital electron populations 1.21996 0.94295 1.01947 1.02223 1.20688 0.96169 0.93751 0.95942 1.21298 0.99348 0.92367 0.87163 1.55989 1.52956 1.41083 1.38809 1.05093 0.74203 0.73462 0.76832 1.93488 1.32006 1.83773 1.87334 1.93554 1.74432 1.82409 1.43688 1.29975 1.11874 1.11891 1.14914 1.18298 0.90597 0.89932 0.97197 1.20556 1.09828 1.30563 0.93842 0.91327 1.24935 0.95125 0.96292 0.96083 1.70011 1.18751 1.36472 1.25840 0.86599 0.77840 0.80403 0.83489 1.20496 1.21043 1.19108 1.23214 0.93079 1.03151 1.05288 1.22532 1.02379 0.99214 0.93808 1.21595 1.00989 0.94893 0.97352 1.21594 1.00960 0.95763 0.97603 1.21538 1.00789 0.98529 0.94844 1.21555 1.01021 0.95474 0.97635 1.21562 1.00900 0.95383 0.96915 0.92344 0.91911 0.92397 0.92042 0.90478 0.75586 0.84798 0.88516 0.92833 0.89531 0.90666 0.91572 0.89579 0.91605 0.91514 0.91717 0.92223 0.92421 0.92063 0.91672 0.92211 0.91605 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 7.61 37.16 0.28 -1.10 16 2 C -0.06 -0.64 0.53 -154.51 -0.08 -0.72 16 3 C 0.13 1.54 5.02 -4.04 -0.02 1.52 16 4 N -1.13 -16.74 5.22 -10.61 -0.06 -16.79 16 5 S 2.61 52.50 5.25 -107.50 -0.56 51.94 16 6 O -0.98 -21.31 17.50 -57.54 -1.01 -22.32 16 7 O -0.95 -22.81 17.52 -57.54 -1.01 -23.82 16 8 C -0.55 -11.59 5.93 37.16 0.22 -11.37 16 9 C 0.04 1.03 1.33 -155.66 -0.21 0.82 16 10 C -0.51 -14.06 8.01 -34.44 -0.28 -14.34 16 11 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 12 C 0.08 2.20 5.39 -17.82 -0.10 2.11 16 13 N -0.88 -24.17 12.93 55.43 0.72 -23.45 16 14 Si 0.89 21.51 29.55 -169.99 -5.02 16.49 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.21 -4.62 9.96 -26.70 -0.27 -4.89 16 19 C -0.14 -3.20 9.43 -26.70 -0.25 -3.45 16 20 C -0.11 -1.13 4.56 -26.73 -0.12 -1.25 16 21 C -0.12 -1.03 5.65 -26.73 -0.15 -1.18 16 22 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 23 C -0.12 -0.90 5.65 -26.73 -0.15 -1.05 16 24 C -0.11 -0.94 4.73 -26.73 -0.13 -1.06 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.52 4.81 -51.93 -0.25 0.27 16 27 H 0.06 0.57 6.60 -51.93 -0.34 0.22 16 28 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 29 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 30 H 0.41 5.45 6.44 -34.47 -0.22 5.23 16 31 H 0.13 2.93 8.14 -51.93 -0.42 2.51 16 32 H 0.10 1.70 8.09 -51.92 -0.42 1.28 16 33 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 34 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 35 H 0.07 1.50 8.14 -51.92 -0.42 1.08 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.74 7.20 -51.93 -0.37 0.36 16 40 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -32.16 372.82 -10.87 -43.03 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.14 Total: 6.34 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: -1.41 Total: -37.03 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.66 Total: -40.25 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -2.01 Total: -46.14 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 52.50 SS G_CDS: -0.56 Total: 51.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.16 -10.87 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451312844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.603 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds