Wall clock time and date at job start Tue Mar 31 2020 10:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47157 * 2 1 4 4 N 1.46499 * 109.47446 * 59.99602 * 3 2 1 5 5 S 1.65598 * 120.00379 * 165.00021 * 4 3 2 6 6 O 1.42100 * 104.27506 * 308.93339 * 5 4 3 7 7 O 1.42100 * 104.27809 * 181.07341 * 5 4 3 8 8 C 1.81403 * 104.44862 * 65.00217 * 5 4 3 9 9 C 1.52995 * 109.47050 * 182.00078 * 8 5 4 10 10 C 1.50710 * 115.55124 * 294.71747 * 9 8 5 11 11 H 1.07999 * 119.99951 * 95.18561 * 10 9 8 12 12 C 1.37877 * 119.99383 * 274.91562 * 10 9 8 13 13 N 1.31511 * 120.00562 * 6.47087 * 12 10 9 14 14 Si 1.86803 * 119.99653 * 186.46914 * 12 10 9 15 15 H 1.48500 * 109.46975 * 90.00093 * 14 12 10 16 16 H 1.48496 * 109.47633 * 210.00093 * 14 12 10 17 17 H 1.48505 * 109.47192 * 330.00237 * 14 12 10 18 18 C 1.52994 * 117.50251 * 80.38697 * 9 8 5 19 19 C 1.52993 * 117.49983 * 149.04761 * 9 8 5 20 20 C 1.52998 * 109.46779 * 119.99761 * 2 1 3 21 21 C 1.53004 * 109.47145 * 60.00357 * 20 2 1 22 22 C 1.52997 * 109.47188 * 59.99916 * 21 20 2 23 23 C 1.52999 * 109.46963 * 299.99739 * 22 21 20 24 24 C 1.52999 * 109.46977 * 239.99921 * 2 1 3 25 25 H 1.09003 * 109.47160 * 60.00289 * 1 2 3 26 26 H 1.08998 * 109.46891 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47165 * 300.00041 * 1 2 3 28 28 H 1.09008 * 109.47263 * 300.00132 * 3 2 1 29 29 H 1.08998 * 109.47228 * 179.97438 * 3 2 1 30 30 H 0.97003 * 120.00101 * 345.00682 * 4 3 2 31 31 H 1.08995 * 109.46686 * 62.00104 * 8 5 4 32 32 H 1.08999 * 109.47201 * 301.99827 * 8 5 4 33 33 H 0.97000 * 119.99782 * 185.08338 * 13 12 10 34 34 H 1.09005 * 117.50108 * 215.00735 * 18 9 8 35 35 H 1.09008 * 117.49894 * 0.02562 * 18 9 8 36 36 H 1.08997 * 117.50145 * 359.97364 * 19 9 8 37 37 H 1.09005 * 117.50385 * 144.97306 * 19 9 8 38 38 H 1.08998 * 109.46907 * 180.02562 * 20 2 1 39 39 H 1.09002 * 109.47433 * 300.00033 * 20 2 1 40 40 H 1.08998 * 109.47061 * 299.99713 * 21 20 2 41 41 H 1.09003 * 109.46914 * 179.97438 * 21 20 2 42 42 H 1.09003 * 109.46878 * 180.02562 * 22 21 20 43 43 H 1.08998 * 109.47285 * 59.99934 * 22 21 20 44 44 H 1.08998 * 109.47280 * 300.00199 * 23 22 21 45 45 H 1.09002 * 109.47250 * 180.02562 * 23 22 21 46 46 H 1.08994 * 109.47115 * 59.99992 * 24 2 1 47 47 H 1.08998 * 109.46779 * 180.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.5517 2.1331 1.1961 5 16 2.2317 3.5707 1.6579 6 8 3.6281 3.3078 1.6765 7 8 1.5363 3.9216 2.8464 8 6 1.8180 4.7189 0.3158 9 6 2.4404 6.0864 0.6046 10 6 1.9012 6.8032 1.8157 11 1 2.4095 6.7174 2.7647 12 6 0.7622 7.5731 1.7107 13 7 0.0749 7.5811 0.5895 14 14 0.1953 8.6047 3.1611 15 1 0.8139 9.9524 3.0818 16 1 -1.2835 8.7362 3.1273 17 1 0.6048 7.9458 4.4274 18 6 3.9232 6.2714 0.2763 19 6 2.8569 6.9405 -0.5945 20 6 2.0400 -0.7212 1.2493 21 6 1.5300 -2.1637 1.2493 22 6 2.0401 -2.8850 0.0001 23 6 1.5301 -2.1638 -1.2491 24 6 2.0400 -0.7213 -1.2492 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 0.8300 1.7484 1.7177 31 1 0.7351 4.8201 0.2452 32 1 2.2091 4.3333 -0.6258 33 1 -0.6834 8.1777 0.4898 34 1 4.5088 6.9114 0.9362 35 1 4.4554 5.4189 -0.1460 36 1 2.6880 6.5280 -1.5892 37 1 2.7406 8.0208 -0.5077 38 1 3.1299 -0.7208 1.2495 39 1 1.6766 -0.2074 2.1393 40 1 0.4400 -2.1638 1.2492 41 1 1.8937 -2.6777 2.1391 42 1 1.6763 -3.9126 -0.0001 43 1 3.1300 -2.8850 0.0001 44 1 0.4401 -2.1638 -1.2492 45 1 1.8931 -2.6779 -2.1391 46 1 1.6767 -0.2075 -2.1392 47 1 3.1300 -0.7216 -1.2490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451312844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:43 Heat of formation + Delta-G solvation = -99.560805 kcal Electronic energy + Delta-G solvation = -25832.522788 eV Core-core repulsion = 22334.041217 eV Total energy + Delta-G solvation = -3498.481571 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.57361 -38.56412 -37.91891 -36.78622 -36.11264 -34.07843 -32.40569 -31.55855 -29.84320 -27.97469 -27.48545 -26.29608 -23.46419 -22.98956 -21.94926 -21.50689 -20.19816 -19.25464 -18.48587 -18.32548 -17.36711 -16.84250 -16.56507 -16.18162 -15.74161 -15.65818 -15.50874 -15.31081 -15.01899 -14.77786 -13.92578 -13.79517 -13.75009 -13.63640 -13.37608 -13.16874 -12.97622 -12.90154 -12.89553 -12.82824 -12.78322 -12.45260 -12.40829 -12.24045 -12.17533 -11.91899 -11.83795 -11.82697 -11.54328 -11.01281 -10.91894 -10.87054 -10.82229 -10.55157 -10.36901 -9.85334 -8.19933 -6.33752 -0.47217 1.37375 1.40237 1.50864 2.07350 2.40413 2.98079 3.08222 3.36381 3.47190 3.66152 3.79349 3.84878 4.01074 4.21286 4.27980 4.32218 4.37433 4.47011 4.51763 4.55720 4.57556 4.64494 4.70105 4.74495 4.81639 4.84954 4.88414 4.96884 4.97699 5.11157 5.15480 5.21889 5.22098 5.25162 5.32705 5.34836 5.42795 5.47299 5.49352 5.58686 5.59291 5.71967 5.72100 6.17095 6.22677 6.72773 7.38746 8.87808 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.003632 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.513023 B = 7707.598437 C = 7960.744809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.059 4.059 3 C 0.113 3.887 4 N -1.114 6.114 5 S 2.624 3.376 6 O -0.995 6.995 7 O -0.997 6.997 8 C -0.551 4.551 9 C 0.008 3.992 10 C -0.530 4.530 11 H 0.047 0.953 12 C 0.041 3.959 13 N -0.892 5.892 14 Si 0.934 3.066 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.277 1.277 18 C -0.198 4.198 19 C -0.136 4.136 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.109 4.109 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.418 0.582 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.265 0.735 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 -19.755 -6.770 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.060 4.060 3 C -0.013 4.013 4 N -0.876 5.876 5 S 2.721 3.279 6 O -0.985 6.985 7 O -0.987 6.987 8 C -0.683 4.683 9 C 0.006 3.994 10 C -0.567 4.567 11 H 0.065 0.935 12 C -0.161 4.161 13 N -0.528 5.528 14 Si 0.759 3.241 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.202 1.202 18 C -0.235 4.235 19 C -0.175 4.175 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.147 4.147 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.255 0.745 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.018 -19.535 -6.121 20.497 hybrid contribution -0.966 1.042 0.560 1.527 sum 0.052 -18.493 -5.561 19.311 Atomic orbital electron populations 1.22021 0.93672 1.02848 1.02040 1.20667 0.96607 0.92137 0.96615 1.21652 0.99349 0.93938 0.86376 1.55508 1.52998 1.39227 1.39904 1.04281 0.73577 0.74024 0.75972 1.93456 1.33272 1.84259 1.87504 1.93488 1.75204 1.83721 1.46276 1.29852 1.10990 1.10545 1.16947 1.18434 0.92422 0.91613 0.96942 1.20726 1.10136 1.31490 0.94378 0.93473 1.25496 0.95310 0.97255 0.98076 1.70050 1.19030 1.36955 1.26777 0.85916 0.77906 0.79554 0.80684 1.19349 1.20113 1.20169 1.23262 0.92153 1.03567 1.04537 1.22493 1.02460 0.98065 0.94514 1.21625 1.00452 0.96163 0.97032 1.21578 1.01228 0.94564 0.98299 1.21539 1.00625 0.99045 0.94400 1.21550 1.01276 0.94663 0.97938 1.21575 1.00865 0.96035 0.96231 0.91901 0.90535 0.93202 0.90262 0.90901 0.74528 0.85922 0.84942 0.92618 0.89961 0.88219 0.89294 0.91559 0.92534 0.92871 0.91188 0.92127 0.91303 0.92390 0.91207 0.91135 0.90751 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 7.61 71.98 0.55 -1.92 16 2 C -0.06 -1.06 0.53 -52.18 -0.03 -1.09 16 3 C 0.11 2.58 5.02 86.38 0.43 3.01 16 4 N -1.11 -32.06 5.22 -187.49 -0.98 -33.04 16 5 S 2.62 105.20 5.25 -56.49 -0.30 104.90 16 6 O -1.00 -42.99 17.50 -127.65 -2.23 -45.23 16 7 O -1.00 -48.86 17.52 -127.65 -2.24 -51.10 16 8 C -0.55 -22.49 5.93 71.98 0.43 -22.07 16 9 C 0.01 0.39 1.33 -52.93 -0.07 0.32 16 10 C -0.53 -29.63 8.01 25.60 0.21 -29.43 16 11 H 0.05 2.76 7.82 -2.91 -0.02 2.73 16 12 C 0.04 2.28 5.39 84.66 0.46 2.73 16 13 N -0.89 -49.25 12.93 21.45 0.28 -48.97 16 14 Si 0.93 44.39 29.55 68.60 2.03 46.41 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 17 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 18 C -0.20 -8.48 9.96 30.61 0.30 -8.18 16 19 C -0.14 -6.07 9.43 30.61 0.29 -5.78 16 20 C -0.11 -2.23 4.56 30.59 0.14 -2.09 16 21 C -0.12 -1.82 5.65 30.59 0.17 -1.64 16 22 C -0.12 -1.54 5.92 30.59 0.18 -1.36 16 23 C -0.12 -1.43 5.65 30.59 0.17 -1.25 16 24 C -0.11 -1.59 4.73 30.60 0.14 -1.44 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.08 1.06 4.81 -2.39 -0.01 1.05 16 27 H 0.05 0.90 6.60 -2.39 -0.02 0.88 16 28 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.07 1.75 7.69 -2.39 -0.02 1.73 16 30 H 0.42 10.91 6.44 -96.75 -0.62 10.28 16 31 H 0.12 5.31 8.14 -2.39 -0.02 5.29 16 32 H 0.13 4.31 8.09 -2.39 -0.02 4.29 16 33 H 0.26 13.88 8.32 -92.71 -0.77 13.11 16 34 H 0.08 3.54 8.14 -2.38 -0.02 3.52 16 35 H 0.10 3.75 8.14 -2.38 -0.02 3.73 16 36 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 37 H 0.07 3.18 8.14 -2.38 -0.02 3.16 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.15 7.20 -2.39 -0.02 1.13 16 40 H 0.07 0.99 6.43 -2.39 -0.02 0.98 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.81 6.43 -2.39 -0.02 0.79 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -68.75 372.82 0.25 -68.49 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.32 Total: 28.71 kcal Atomic # 6 Polarization: -73.56 SS G_CDS: 3.38 Total: -70.18 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -0.70 Total: -82.01 kcal Atomic # 8 Polarization: -91.86 SS G_CDS: -4.47 Total: -96.33 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 105.20 SS G_CDS: -0.30 Total: 104.90 kcal Total: -68.75 0.25 -68.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451312844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.069 kcal (2) G-P(sol) polarization free energy of solvation -68.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds