Wall clock time and date at job start Tue Mar 31 2020 10:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47001 * 2 1 4 4 C 1.52999 * 109.47486 * 239.99366 * 2 1 3 5 5 C 1.53001 * 109.47322 * 300.00641 * 4 2 1 6 6 C 1.53001 * 109.46829 * 299.99618 * 5 4 2 7 7 C 1.52995 * 109.47044 * 59.99795 * 6 5 4 8 8 H 1.09001 * 109.47111 * 60.00333 * 7 6 5 9 9 N 1.46503 * 109.46666 * 179.97438 * 7 6 5 10 10 S 1.65603 * 120.00363 * 264.99951 * 9 7 6 11 11 O 1.42097 * 104.27574 * 308.93509 * 10 9 7 12 12 O 1.42102 * 104.27791 * 181.07371 * 10 9 7 13 13 C 1.81400 * 104.44623 * 65.00314 * 10 9 7 14 14 C 1.52992 * 109.47265 * 178.92244 * 13 10 9 15 15 C 1.50702 * 115.55209 * 294.50234 * 14 13 10 16 16 H 1.08005 * 119.99818 * 99.41295 * 15 14 13 17 17 C 1.37878 * 120.00287 * 279.41534 * 15 14 13 18 18 N 1.31515 * 119.99740 * 7.39080 * 17 15 14 19 19 Si 1.86790 * 120.00195 * 187.66507 * 17 15 14 20 20 H 1.48497 * 109.47478 * 269.72306 * 19 17 15 21 21 H 1.48505 * 109.47236 * 29.72943 * 19 17 15 22 22 H 1.48509 * 109.47203 * 149.72520 * 19 17 15 23 23 C 1.53001 * 117.51894 * 80.20347 * 14 13 10 24 24 C 1.52994 * 60.00078 * 107.48336 * 23 14 13 25 25 C 1.52998 * 109.47672 * 300.00132 * 7 6 5 26 26 H 1.08994 * 109.47333 * 300.00125 * 1 2 3 27 27 H 1.09001 * 109.46931 * 60.00401 * 1 2 3 28 28 H 1.09002 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47017 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46950 * 299.99587 * 3 2 1 31 31 H 1.08994 * 109.47180 * 59.99781 * 3 2 1 32 32 H 1.09004 * 109.46452 * 60.00533 * 4 2 1 33 33 H 1.09001 * 109.47452 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47235 * 59.99853 * 5 4 2 35 35 H 1.08998 * 109.46768 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.46895 * 299.99996 * 6 5 4 37 37 H 1.08999 * 109.47095 * 180.02562 * 6 5 4 38 38 H 0.97001 * 120.00021 * 85.00820 * 9 7 6 39 39 H 1.09009 * 109.47217 * 58.92412 * 13 10 9 40 40 H 1.09000 * 109.47583 * 298.92502 * 13 10 9 41 41 H 0.97000 * 119.99814 * 355.28084 * 18 17 15 42 42 H 1.09005 * 117.49862 * 214.97156 * 23 14 13 43 43 H 1.08998 * 117.49922 * 359.97438 * 23 14 13 44 44 H 1.09001 * 117.50371 * 252.51250 * 24 23 14 45 45 H 1.09008 * 117.50192 * 107.48795 * 24 23 14 46 46 H 1.08994 * 109.47180 * 180.02562 * 25 7 6 47 47 H 1.09001 * 109.46873 * 299.99722 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2491 6 6 2.0400 -2.8850 0.0002 7 6 1.5300 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2493 9 7 2.0178 -2.8546 2.4455 10 16 1.0678 -3.9862 3.1935 11 8 -0.1792 -3.3304 3.3776 12 8 1.8420 -4.4139 4.3057 13 6 0.9110 -5.3217 1.9759 14 6 0.0668 -6.4531 2.5658 15 6 0.6738 -7.1707 3.7438 16 1 0.3647 -6.9184 4.7475 17 6 1.6236 -8.1492 3.5404 18 7 2.1063 -8.3565 2.3348 19 14 2.2191 -9.1856 4.9758 20 1 3.3951 -8.5318 5.6042 21 1 1.1308 -9.3155 5.9778 22 1 2.6050 -10.5336 4.4866 23 6 -1.4537 -6.2835 2.5488 24 6 -0.7842 -7.2780 1.5982 25 6 2.0399 -0.7212 1.2493 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6768 -0.2075 -2.1391 33 1 3.1301 -0.7218 -1.2489 34 1 0.4400 -2.1638 -1.2492 35 1 1.8938 -2.6778 -2.1388 36 1 3.1300 -2.8850 0.0002 37 1 1.6770 -3.9128 0.0000 38 1 2.8972 -2.6493 2.7995 39 1 1.9011 -5.7010 1.7230 40 1 0.4281 -4.9389 1.0768 41 1 1.7457 -7.8691 1.5776 42 1 -2.0150 -6.6909 3.3897 43 1 -1.8529 -5.3654 2.1177 44 1 -0.7429 -7.0144 0.5414 45 1 -0.9050 -8.3397 1.8137 46 1 1.6769 -0.2075 2.1395 47 1 3.1299 -0.7212 1.2494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451447075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:13 Heat of formation + Delta-G solvation = -84.062892 kcal Electronic energy + Delta-G solvation = -26317.164793 eV Core-core repulsion = 22819.355262 eV Total energy + Delta-G solvation = -3497.809531 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.84466 -37.08068 -36.29946 -35.18143 -34.99297 -32.51092 -31.99881 -28.95008 -28.35696 -27.50689 -26.47332 -24.94815 -22.56646 -21.43149 -21.25365 -19.99650 -19.08348 -18.28348 -16.97327 -16.83784 -16.35516 -15.43009 -14.94294 -14.92133 -14.48291 -14.36152 -14.04133 -13.82770 -13.73180 -13.49174 -13.20860 -12.80615 -12.52758 -12.28994 -12.06887 -11.86453 -11.81804 -11.64039 -11.47881 -11.37208 -11.30932 -11.16658 -11.10235 -11.08829 -10.76701 -10.65502 -10.50826 -10.43339 -10.28776 -10.12842 -10.08887 -9.72270 -9.20225 -8.68895 -8.48303 -8.29952 -6.44178 -4.21359 1.02111 3.36929 3.46722 3.49246 3.64821 4.42038 4.48246 4.48652 4.51281 4.60225 4.89978 4.92489 4.95334 4.99459 5.11740 5.19704 5.21322 5.28961 5.32067 5.44859 5.48551 5.50556 5.55932 5.61370 5.72122 5.77827 5.82602 5.83175 5.88214 5.91108 6.01625 6.04664 6.11118 6.15375 6.18238 6.22615 6.30803 6.36033 6.43353 6.52159 6.74643 7.01917 7.15480 7.28410 8.05055 8.37576 8.78445 9.56020 10.95378 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.004087 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.606913 B = 6848.757119 C = 6995.260084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.064 4.064 3 C -0.140 4.140 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.147 4.147 7 C 0.147 3.853 8 H 0.091 0.909 9 N -1.127 6.127 10 S 2.612 3.388 11 O -0.976 6.976 12 O -0.944 6.944 13 C -0.568 4.568 14 C 0.022 3.978 15 C -0.584 4.584 16 H 0.063 0.937 17 C 0.038 3.962 18 N -0.900 5.900 19 Si 1.067 2.933 20 H -0.283 1.283 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.195 4.195 24 C -0.165 4.165 25 C -0.110 4.110 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.411 0.589 39 H 0.129 0.871 40 H 0.100 0.900 41 H 0.274 0.726 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 15.894 -8.677 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.065 4.065 3 C -0.197 4.197 4 C -0.146 4.146 5 C -0.159 4.159 6 C -0.187 4.187 7 C 0.039 3.961 8 H 0.109 0.891 9 N -0.883 5.883 10 S 2.708 3.292 11 O -0.966 6.966 12 O -0.934 6.934 13 C -0.700 4.700 14 C 0.020 3.980 15 C -0.621 4.621 16 H 0.081 0.919 17 C -0.169 4.169 18 N -0.534 5.534 19 Si 0.895 3.105 20 H -0.209 1.209 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.233 4.233 24 C -0.204 4.204 25 C -0.149 4.149 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.244 0.756 39 H 0.147 0.853 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.806 14.764 -7.426 16.546 hybrid contribution -0.487 1.001 -1.102 1.566 sum 0.319 15.764 -8.528 17.926 Atomic orbital electron populations 1.22033 0.94460 1.02472 1.01782 1.20529 0.95933 0.95079 0.94911 1.21851 1.00883 0.95266 1.01739 1.21624 1.00617 0.95382 0.96993 1.21564 1.01285 0.95441 0.97588 1.22251 1.02102 0.99956 0.94345 1.20827 0.99215 0.92121 0.83888 0.89075 1.56051 1.32898 1.57664 1.41645 1.04927 0.73779 0.74597 0.75868 1.93496 1.44488 1.73332 1.85241 1.93568 1.69827 1.81990 1.48050 1.30206 1.10148 1.15504 1.14125 1.18584 0.87340 0.94335 0.97786 1.21397 1.27071 1.22399 0.91194 0.91922 1.25801 0.93167 0.96028 1.01916 1.70746 1.39175 1.43553 0.99927 0.83576 0.76465 0.76065 0.74419 1.20931 1.21136 1.20994 1.23065 0.97113 1.00454 1.02641 1.22800 1.06143 0.97293 0.94141 1.21844 1.01013 0.94181 0.97869 0.92419 0.92670 0.91813 0.92705 0.92655 0.92586 0.91929 0.91861 0.91389 0.91607 0.91012 0.91032 0.75601 0.85304 0.88166 0.91490 0.89248 0.90427 0.91231 0.89355 0.91084 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 7.78 37.16 0.29 -1.11 16 2 C -0.06 -0.57 0.77 -154.51 -0.12 -0.69 16 3 C -0.14 -1.08 8.47 37.16 0.31 -0.76 16 4 C -0.11 -0.92 4.73 -26.73 -0.13 -1.05 16 5 C -0.12 -1.16 5.65 -26.73 -0.15 -1.31 16 6 C -0.15 -1.71 5.49 -26.73 -0.15 -1.86 16 7 C 0.15 1.88 2.41 -67.93 -0.16 1.72 16 8 H 0.09 1.24 5.77 -51.93 -0.30 0.94 16 9 N -1.13 -17.07 5.36 -4.89 -0.03 -17.09 16 10 S 2.61 53.30 5.27 -107.50 -0.57 52.73 16 11 O -0.98 -21.44 17.39 -57.54 -1.00 -22.44 16 12 O -0.94 -23.05 17.37 -57.54 -1.00 -24.05 16 13 C -0.57 -11.75 4.88 37.15 0.18 -11.57 16 14 C 0.02 0.53 0.84 -155.66 -0.13 0.40 16 15 C -0.58 -16.17 7.87 -34.44 -0.27 -16.44 16 16 H 0.06 1.80 7.83 -52.48 -0.41 1.39 16 17 C 0.04 1.05 5.41 -17.82 -0.10 0.95 16 18 N -0.90 -25.73 13.61 55.43 0.75 -24.98 16 19 Si 1.07 25.41 29.91 -169.99 -5.08 20.32 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C -0.20 -4.25 9.96 -26.73 -0.27 -4.52 16 24 C -0.16 -3.64 9.09 -26.73 -0.24 -3.89 16 25 C -0.11 -1.16 4.26 -26.73 -0.11 -1.27 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.64 4.81 -51.93 -0.25 0.39 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.90 5.82 -51.93 -0.30 0.60 16 38 H 0.41 5.47 8.80 -34.47 -0.30 5.17 16 39 H 0.13 2.76 7.49 -51.92 -0.39 2.37 16 40 H 0.10 1.73 6.80 -51.92 -0.35 1.38 16 41 H 0.27 7.62 6.03 -40.82 -0.25 7.37 16 42 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 43 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 45 H 0.09 2.06 8.14 -51.92 -0.42 1.64 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -32.97 369.74 -10.42 -43.39 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.02 Total: 7.94 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: -1.04 Total: -41.40 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.73 Total: -42.07 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -2.00 Total: -46.49 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.32 kcal Atomic # 16 Polarization: 53.30 SS G_CDS: -0.57 Total: 52.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.97 -10.42 -43.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451447075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.672 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds