Wall clock time and date at job start Tue Mar 31 2020 10:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47001 * 2 1 4 4 C 1.52999 * 109.47486 * 239.99366 * 2 1 3 5 5 C 1.53001 * 109.47322 * 300.00641 * 4 2 1 6 6 C 1.53001 * 109.46829 * 299.99618 * 5 4 2 7 7 C 1.52995 * 109.47044 * 59.99795 * 6 5 4 8 8 H 1.09001 * 109.47111 * 60.00333 * 7 6 5 9 9 N 1.46503 * 109.46666 * 179.97438 * 7 6 5 10 10 S 1.65603 * 120.00363 * 264.99951 * 9 7 6 11 11 O 1.42097 * 104.27574 * 308.93509 * 10 9 7 12 12 O 1.42102 * 104.27791 * 181.07371 * 10 9 7 13 13 C 1.81400 * 104.44623 * 65.00314 * 10 9 7 14 14 C 1.52992 * 109.47265 * 178.92244 * 13 10 9 15 15 C 1.50702 * 115.55209 * 294.50234 * 14 13 10 16 16 H 1.08005 * 119.99818 * 99.41295 * 15 14 13 17 17 C 1.37878 * 120.00287 * 279.41534 * 15 14 13 18 18 N 1.31515 * 119.99740 * 7.39080 * 17 15 14 19 19 Si 1.86790 * 120.00195 * 187.66507 * 17 15 14 20 20 H 1.48497 * 109.47478 * 269.72306 * 19 17 15 21 21 H 1.48505 * 109.47236 * 29.72943 * 19 17 15 22 22 H 1.48509 * 109.47203 * 149.72520 * 19 17 15 23 23 C 1.53001 * 117.51894 * 80.20347 * 14 13 10 24 24 C 1.52994 * 60.00078 * 107.48336 * 23 14 13 25 25 C 1.52998 * 109.47672 * 300.00132 * 7 6 5 26 26 H 1.08994 * 109.47333 * 300.00125 * 1 2 3 27 27 H 1.09001 * 109.46931 * 60.00401 * 1 2 3 28 28 H 1.09002 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47017 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46950 * 299.99587 * 3 2 1 31 31 H 1.08994 * 109.47180 * 59.99781 * 3 2 1 32 32 H 1.09004 * 109.46452 * 60.00533 * 4 2 1 33 33 H 1.09001 * 109.47452 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47235 * 59.99853 * 5 4 2 35 35 H 1.08998 * 109.46768 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.46895 * 299.99996 * 6 5 4 37 37 H 1.08999 * 109.47095 * 180.02562 * 6 5 4 38 38 H 0.97001 * 120.00021 * 85.00820 * 9 7 6 39 39 H 1.09009 * 109.47217 * 58.92412 * 13 10 9 40 40 H 1.09000 * 109.47583 * 298.92502 * 13 10 9 41 41 H 0.97000 * 119.99814 * 355.28084 * 18 17 15 42 42 H 1.09005 * 117.49862 * 214.97156 * 23 14 13 43 43 H 1.08998 * 117.49922 * 359.97438 * 23 14 13 44 44 H 1.09001 * 117.50371 * 252.51250 * 24 23 14 45 45 H 1.09008 * 117.50192 * 107.48795 * 24 23 14 46 46 H 1.08994 * 109.47180 * 180.02562 * 25 7 6 47 47 H 1.09001 * 109.46873 * 299.99722 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2491 6 6 2.0400 -2.8850 0.0002 7 6 1.5300 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2493 9 7 2.0178 -2.8546 2.4455 10 16 1.0678 -3.9862 3.1935 11 8 -0.1792 -3.3304 3.3776 12 8 1.8420 -4.4139 4.3057 13 6 0.9110 -5.3217 1.9759 14 6 0.0668 -6.4531 2.5658 15 6 0.6738 -7.1707 3.7438 16 1 0.3647 -6.9184 4.7475 17 6 1.6236 -8.1492 3.5404 18 7 2.1063 -8.3565 2.3348 19 14 2.2191 -9.1856 4.9758 20 1 3.3951 -8.5318 5.6042 21 1 1.1308 -9.3155 5.9778 22 1 2.6050 -10.5336 4.4866 23 6 -1.4537 -6.2835 2.5488 24 6 -0.7842 -7.2780 1.5982 25 6 2.0399 -0.7212 1.2493 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6768 -0.2075 -2.1391 33 1 3.1301 -0.7218 -1.2489 34 1 0.4400 -2.1638 -1.2492 35 1 1.8938 -2.6778 -2.1388 36 1 3.1300 -2.8850 0.0002 37 1 1.6770 -3.9128 0.0000 38 1 2.8972 -2.6493 2.7995 39 1 1.9011 -5.7010 1.7230 40 1 0.4281 -4.9389 1.0768 41 1 1.7457 -7.8691 1.5776 42 1 -2.0150 -6.6909 3.3897 43 1 -1.8529 -5.3654 2.1177 44 1 -0.7429 -7.0144 0.5414 45 1 -0.9050 -8.3397 1.8137 46 1 1.6769 -0.2075 2.1395 47 1 3.1299 -0.7212 1.2494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451447075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:12 Heat of formation + Delta-G solvation = -105.213267 kcal Electronic energy + Delta-G solvation = -26318.081942 eV Core-core repulsion = 22819.355262 eV Total energy + Delta-G solvation = -3498.726680 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66817 -38.91012 -38.02981 -36.89722 -36.07467 -34.07180 -33.34010 -30.03207 -29.93093 -28.18256 -27.27943 -26.98866 -23.43755 -23.18094 -22.19305 -21.76111 -20.52080 -19.35532 -18.80136 -18.35396 -17.56356 -17.10987 -16.26142 -15.86207 -15.69183 -15.63796 -15.55960 -15.26189 -14.99895 -14.60473 -14.50523 -14.31808 -13.66769 -13.64449 -13.17887 -13.07106 -13.02783 -12.99727 -12.89713 -12.73356 -12.67811 -12.52195 -12.40735 -12.32872 -12.19589 -12.04195 -11.94065 -11.83511 -11.55013 -11.26825 -11.16305 -10.95809 -10.63439 -10.50999 -10.43893 -10.09666 -8.60711 -6.37342 -0.59987 1.52388 1.59073 1.77261 1.92559 2.53900 2.84781 3.11612 3.16247 3.33449 3.61321 3.74896 3.77580 3.86180 4.07445 4.10001 4.15317 4.25158 4.30134 4.37647 4.43530 4.46351 4.53068 4.58693 4.66218 4.75986 4.79100 4.81994 4.91816 4.98728 4.99519 5.08345 5.11198 5.15662 5.22258 5.22948 5.26313 5.30405 5.38932 5.42186 5.46902 5.51718 5.65274 6.02753 6.11353 6.17734 6.65436 7.43581 8.80791 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.004087 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.606913 B = 6848.757119 C = 6995.260084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.061 4.061 3 C -0.138 4.138 4 C -0.105 4.105 5 C -0.120 4.120 6 C -0.148 4.148 7 C 0.139 3.861 8 H 0.083 0.917 9 N -1.113 6.113 10 S 2.625 3.375 11 O -0.994 6.994 12 O -0.992 6.992 13 C -0.560 4.560 14 C -0.014 4.014 15 C -0.597 4.597 16 H 0.039 0.961 17 C -0.003 4.003 18 N -0.918 5.918 19 Si 1.096 2.904 20 H -0.279 1.279 21 H -0.275 1.275 22 H -0.274 1.274 23 C -0.186 4.186 24 C -0.155 4.155 25 C -0.109 4.109 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.421 0.579 39 H 0.119 0.881 40 H 0.134 0.866 41 H 0.271 0.729 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 17.335 -10.441 20.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.062 4.062 3 C -0.195 4.195 4 C -0.143 4.143 5 C -0.158 4.158 6 C -0.188 4.188 7 C 0.033 3.967 8 H 0.101 0.899 9 N -0.872 5.872 10 S 2.721 3.279 11 O -0.984 6.984 12 O -0.982 6.982 13 C -0.692 4.692 14 C -0.016 4.016 15 C -0.635 4.635 16 H 0.057 0.943 17 C -0.205 4.205 18 N -0.553 5.553 19 Si 0.920 3.080 20 H -0.206 1.206 21 H -0.200 1.200 22 H -0.199 1.199 23 C -0.223 4.223 24 C -0.194 4.194 25 C -0.148 4.148 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.256 0.744 39 H 0.138 0.862 40 H 0.153 0.847 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.967 16.211 -9.188 18.659 hybrid contribution -0.583 0.626 -0.582 1.034 sum 0.384 16.837 -9.770 19.470 Atomic orbital electron populations 1.22066 0.94832 1.01949 1.02217 1.20531 0.95632 0.95799 0.94237 1.21826 1.01241 0.94218 1.02197 1.21617 1.00965 0.94516 0.97179 1.21579 1.01367 0.96109 0.96704 1.22261 1.02510 0.99347 0.94649 1.21116 0.98956 0.93500 0.83155 0.89897 1.55614 1.32859 1.56346 1.42409 1.04239 0.73421 0.74756 0.75435 1.93464 1.45676 1.73600 1.85678 1.93499 1.70799 1.83084 1.50835 1.30061 1.09354 1.14481 1.15314 1.18689 0.88849 0.96060 0.98025 1.21575 1.27319 1.22999 0.91565 0.94289 1.26820 0.93485 0.96945 1.03293 1.70818 1.39966 1.44331 1.00217 0.83205 0.76596 0.75470 0.72768 1.20550 1.20008 1.19942 1.23129 0.95525 1.01258 1.02426 1.22773 1.04936 0.96289 0.95426 1.21870 1.01717 0.92507 0.98693 0.93062 0.91234 0.92803 0.92135 0.91559 0.92830 0.90457 0.91286 0.91337 0.90633 0.90411 0.92254 0.74382 0.86243 0.84747 0.91835 0.89800 0.88023 0.88471 0.91135 0.91750 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 7.78 71.98 0.56 -1.98 16 2 C -0.06 -0.94 0.77 -52.18 -0.04 -0.98 16 3 C -0.14 -1.73 8.47 71.98 0.61 -1.12 16 4 C -0.11 -1.45 4.73 30.59 0.14 -1.31 16 5 C -0.12 -1.97 5.65 30.59 0.17 -1.80 16 6 C -0.15 -3.16 5.49 30.59 0.17 -2.99 16 7 C 0.14 3.36 2.41 44.99 0.11 3.47 16 8 H 0.08 2.16 5.77 -2.39 -0.01 2.15 16 9 N -1.11 -32.91 5.36 -169.39 -0.91 -33.82 16 10 S 2.62 107.27 5.27 -56.49 -0.30 106.97 16 11 O -0.99 -43.50 17.39 -127.65 -2.22 -45.72 16 12 O -0.99 -49.58 17.37 -127.65 -2.22 -51.80 16 13 C -0.56 -22.86 4.88 71.98 0.35 -22.51 16 14 C -0.01 -0.68 0.84 -52.93 -0.04 -0.72 16 15 C -0.60 -33.69 7.87 25.60 0.20 -33.49 16 16 H 0.04 2.32 7.83 -2.91 -0.02 2.29 16 17 C 0.00 -0.18 5.41 84.65 0.46 0.28 16 18 N -0.92 -52.76 13.61 21.45 0.29 -52.47 16 19 Si 1.10 51.49 29.91 68.60 2.05 53.54 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 23 C -0.19 -7.93 9.96 30.59 0.30 -7.62 16 24 C -0.16 -6.72 9.09 30.59 0.28 -6.44 16 25 C -0.11 -2.09 4.26 30.59 0.13 -1.96 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 0.99 4.81 -2.39 -0.01 0.98 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 1.13 6.43 -2.39 -0.02 1.12 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.40 5.82 -2.39 -0.01 1.38 16 38 H 0.42 10.93 8.80 -96.75 -0.85 10.07 16 39 H 0.12 5.12 7.49 -2.39 -0.02 5.10 16 40 H 0.13 4.42 6.80 -2.39 -0.02 4.40 16 41 H 0.27 15.13 6.03 -92.71 -0.56 14.57 16 42 H 0.08 3.62 8.14 -2.38 -0.02 3.60 16 43 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 44 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 45 H 0.07 3.28 8.14 -2.38 -0.02 3.26 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -71.07 369.74 0.41 -70.65 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.31 Total: 31.81 kcal Atomic # 6 Polarization: -82.57 SS G_CDS: 3.40 Total: -79.17 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -0.62 Total: -86.29 kcal Atomic # 8 Polarization: -93.08 SS G_CDS: -4.44 Total: -97.52 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 2.05 Total: 53.54 kcal Atomic # 16 Polarization: 107.27 SS G_CDS: -0.30 Total: 106.97 kcal Total: -71.07 0.41 -70.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451447075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.560 kcal (2) G-P(sol) polarization free energy of solvation -71.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds