Wall clock time and date at job start Tue Mar 31 2020 10:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38006 * 119.88597 * 2 1 4 4 C 1.39638 * 119.98694 * 180.02562 * 3 2 1 5 5 C 1.43196 * 120.11566 * 180.02562 * 4 3 2 6 6 N 4.80226 * 134.54419 * 0.02562 * 2 1 3 7 7 C 1.39546 * 119.76608 * 0.02562 * 4 3 2 8 8 C 1.38580 * 119.77483 * 0.02562 * 7 4 3 9 9 N 1.39970 * 119.99893 * 179.97438 * 8 7 4 10 10 C 1.34781 * 119.99861 * 35.10377 * 9 8 7 11 11 O 1.21591 * 120.00022 * 355.39048 * 10 9 8 12 12 N 1.34772 * 120.00054 * 175.39034 * 10 9 8 13 13 C 1.46496 * 120.00060 * 179.72590 * 12 10 9 14 14 C 1.53002 * 109.47280 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47017 * 299.99956 * 14 13 12 16 16 C 1.53002 * 109.47317 * 59.99977 * 14 13 12 17 17 C 1.53006 * 109.47342 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.46962 * 179.97438 * 17 14 13 19 19 H 1.07997 * 120.00272 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99406 * 180.02562 * 18 17 14 21 21 N 1.31513 * 119.99326 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00257 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46954 * 90.00471 * 22 20 18 24 24 H 1.48503 * 109.47039 * 209.99975 * 22 20 18 25 25 H 1.48493 * 109.47266 * 330.00437 * 22 20 18 26 26 C 1.38223 * 119.88543 * 180.25831 * 2 1 3 27 27 H 1.09002 * 109.47861 * 90.00110 * 1 2 3 28 28 H 1.09006 * 109.47030 * 209.99732 * 1 2 3 29 29 H 1.08996 * 109.47508 * 329.99406 * 1 2 3 30 30 H 1.07996 * 120.00762 * 0.02895 * 3 2 1 31 31 H 1.07996 * 120.11703 * 180.02562 * 7 4 3 32 32 H 0.97001 * 120.00320 * 215.11006 * 9 8 7 33 33 H 0.96998 * 120.00111 * 0.02562 * 12 10 9 34 34 H 1.09003 * 109.47461 * 299.99794 * 13 12 10 35 35 H 1.08997 * 109.47220 * 60.00317 * 13 12 10 36 36 H 1.09000 * 109.46893 * 60.00140 * 15 14 13 37 37 H 1.08997 * 109.47251 * 179.97438 * 15 14 13 38 38 H 1.09000 * 109.47002 * 300.00291 * 15 14 13 39 39 H 1.09005 * 109.47052 * 60.00101 * 16 14 13 40 40 H 1.08997 * 109.47345 * 180.02562 * 16 14 13 41 41 H 1.09000 * 109.47236 * 300.00254 * 16 14 13 42 42 H 1.08992 * 109.47029 * 300.00090 * 17 14 13 43 43 H 1.09008 * 109.46571 * 59.99960 * 17 14 13 44 44 H 0.97006 * 119.99928 * 179.97438 * 21 20 18 45 45 H 1.08005 * 119.88206 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1965 0.0000 4 6 3.5910 1.1990 -0.0005 5 6 4.3073 2.4389 0.0000 6 7 4.8756 3.4226 0.0015 7 6 4.2859 -0.0111 -0.0016 8 6 3.5855 -1.2069 -0.0027 9 7 4.2778 -2.4234 -0.0043 10 6 5.4413 -2.5375 0.6663 11 8 5.9321 -1.5628 1.2026 12 7 6.0608 -3.7320 0.7426 13 6 7.3285 -3.8548 1.4665 14 6 7.8151 -5.3039 1.4007 15 6 6.7715 -6.2218 2.0405 16 6 8.0213 -5.7069 -0.0608 17 6 9.1395 -5.4320 2.1562 18 6 9.6184 -6.8595 2.0919 19 1 9.0362 -7.6012 1.5653 20 6 10.7993 -7.2187 2.7063 21 7 11.2174 -8.4643 2.6498 22 14 11.8058 -5.9359 3.6178 23 1 11.3724 -5.8835 5.0371 24 1 13.2446 -6.2978 3.5527 25 1 11.6007 -4.6068 2.9882 26 6 2.1957 -1.1984 -0.0054 27 1 -0.3635 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6529 2.1308 0.0005 31 1 5.3659 -0.0158 -0.0016 32 1 3.9203 -3.1843 -0.4882 33 1 5.6695 -4.5095 0.3145 34 1 8.0722 -3.2012 1.0104 35 1 7.1818 -3.5674 2.5076 36 1 5.8283 -6.1305 1.5019 37 1 7.1179 -7.2542 1.9932 38 1 6.6246 -5.9347 3.0817 39 1 8.7648 -5.0529 -0.5166 40 1 8.3675 -6.7393 -0.1077 41 1 7.0781 -5.6155 -0.5995 42 1 9.8827 -4.7782 1.7000 43 1 8.9929 -5.1448 3.1975 44 1 12.0484 -8.7170 3.0817 45 1 1.6519 -2.1316 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455954032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:12 Heat of formation + Delta-G solvation = 11.312818 kcal Electronic energy + Delta-G solvation = -25095.526080 eV Core-core repulsion = 21498.701150 eV Total energy + Delta-G solvation = -3596.824930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.95132 -39.42583 -37.52745 -36.72584 -35.10360 -33.89576 -32.91612 -32.15457 -30.24302 -27.85656 -27.36648 -26.62456 -26.25564 -24.27121 -23.17746 -21.97067 -20.66086 -19.22725 -18.76374 -17.71047 -16.92543 -16.65301 -16.44652 -16.10432 -15.45003 -14.94108 -14.58910 -14.35371 -14.01061 -13.93339 -13.70849 -13.65685 -13.49791 -13.34807 -13.19224 -12.78804 -12.72553 -12.45008 -12.31096 -12.22139 -12.07362 -11.79860 -11.31278 -11.19608 -11.05173 -10.66940 -10.59737 -10.54719 -10.20415 -10.02818 -9.78429 -9.58920 -9.13059 -9.04277 -9.02257 -8.56544 -8.41510 -6.07382 -4.04943 0.43850 0.94288 2.33836 2.51725 2.60218 3.08126 3.29756 3.38128 3.41914 3.57355 3.59777 4.07895 4.37499 4.43079 4.68630 4.72858 4.80432 4.99286 5.20083 5.24964 5.25103 5.30510 5.33382 5.46535 5.54888 5.57078 5.80660 5.96026 6.01548 6.03519 6.04275 6.08070 6.08551 6.24565 6.38250 6.53458 6.58959 6.60066 6.71420 6.84607 6.96125 6.99738 7.15382 7.25476 7.31779 7.73552 7.81920 8.40647 8.49201 8.96267 9.55261 11.05232 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021829 B = 0.002442 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.417068 B =11461.761163 C =12378.265172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.068 4.068 3 C -0.093 4.093 4 C -0.007 4.007 5 C 0.259 3.741 6 N -0.417 5.417 7 C -0.079 4.079 8 C 0.177 3.823 9 N -0.690 5.690 10 C 0.699 3.301 11 O -0.575 6.575 12 N -0.728 5.728 13 C 0.142 3.858 14 C -0.063 4.063 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.002 4.002 18 C -0.512 4.512 19 H 0.078 0.922 20 C 0.067 3.933 21 N -0.903 5.903 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 C -0.121 4.121 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.132 0.868 31 H 0.152 0.848 32 H 0.409 0.591 33 H 0.398 0.602 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.030 0.970 42 H 0.019 0.981 43 H 0.014 0.986 44 H 0.263 0.737 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.350 12.369 -8.127 27.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.069 4.069 3 C -0.114 4.114 4 C -0.011 4.011 5 C -0.057 4.057 6 N -0.092 5.092 7 C -0.102 4.102 8 C 0.081 3.919 9 N -0.338 5.338 10 C 0.400 3.600 11 O -0.452 6.452 12 N -0.382 5.382 13 C 0.019 3.981 14 C -0.063 4.063 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.040 4.040 18 C -0.549 4.549 19 H 0.096 0.904 20 C -0.134 4.134 21 N -0.542 5.542 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 C -0.143 4.143 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.170 0.830 32 H 0.245 0.755 33 H 0.233 0.767 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.033 0.967 44 H 0.072 0.928 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.768 14.579 -7.528 27.259 hybrid contribution 0.201 -0.646 0.184 0.701 sum -21.567 13.933 -7.344 26.706 Atomic orbital electron populations 1.20802 0.90170 1.03312 1.02751 1.19525 0.96329 0.91763 0.99276 1.20973 0.91656 0.98533 1.00278 1.15779 0.91993 0.86725 1.06595 1.25629 0.93445 0.92849 0.93757 1.81248 1.08067 1.11292 1.08633 1.21383 1.01917 0.89243 0.97651 1.17216 0.90285 0.84921 0.99462 1.42637 1.23727 1.12886 1.54556 1.15993 0.80127 0.84495 0.79431 1.90939 1.66033 1.36884 1.51365 1.45351 1.25827 1.08795 1.58267 1.21602 0.82352 0.98280 0.95869 1.20709 0.97810 0.90959 0.96833 1.21777 0.95883 1.01531 0.99395 1.21777 0.99042 1.03347 0.94422 1.19597 0.91185 0.98487 0.94743 1.21057 1.06699 0.92913 1.34269 0.90390 1.25001 0.97437 0.95016 0.95986 1.69899 1.22622 1.16905 1.44792 0.86862 0.79520 0.82778 0.80631 1.20359 1.21497 1.18964 1.20992 0.91873 0.98767 1.02645 0.90736 0.91114 0.91130 0.85027 0.83024 0.75509 0.76673 0.91697 0.91646 0.95083 0.90833 0.93337 0.93332 0.90816 0.95093 0.96293 0.96741 0.92766 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.40 10.00 36.00 0.36 -0.04 16 2 C -0.07 -0.41 5.87 -104.71 -0.61 -1.03 16 3 C -0.09 -0.66 9.40 -39.14 -0.37 -1.03 16 4 C -0.01 -0.07 5.73 -106.96 -0.61 -0.68 16 5 C 0.26 3.02 15.33 -22.47 -0.34 2.68 16 6 N -0.42 -5.79 18.54 41.84 0.78 -5.02 16 7 C -0.08 -0.86 8.40 -38.97 -0.33 -1.19 16 8 C 0.18 1.61 6.29 -83.74 -0.53 1.09 16 9 N -0.69 -6.08 5.34 -14.26 -0.08 -6.15 16 10 C 0.70 8.95 8.41 -86.92 -0.73 8.22 16 11 O -0.58 -9.64 13.77 5.29 0.07 -9.57 16 12 N -0.73 -8.84 4.96 -65.23 -0.32 -9.16 16 13 C 0.14 2.20 4.56 -4.04 -0.02 2.18 16 14 C -0.06 -1.07 0.54 -154.50 -0.08 -1.15 16 15 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 16 C -0.13 -2.06 8.05 37.16 0.30 -1.77 16 17 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 18 C -0.51 -13.31 8.21 -34.44 -0.28 -13.60 16 19 H 0.08 2.14 5.92 -52.49 -0.31 1.83 16 20 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 21 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 22 Si 0.87 21.22 27.47 -169.99 -4.67 16.55 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 26 C -0.12 -0.79 9.61 -39.31 -0.38 -1.17 16 27 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 29 H 0.07 0.21 8.08 -51.93 -0.42 -0.21 16 30 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.15 2.01 6.22 -52.49 -0.33 1.68 16 32 H 0.41 2.17 8.84 -40.82 -0.36 1.81 16 33 H 0.40 3.84 6.18 -40.82 -0.25 3.59 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.03 0.39 6.87 -51.93 -0.36 0.03 16 37 H 0.07 1.35 6.62 -51.93 -0.34 1.01 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.35 6.62 -51.93 -0.34 1.01 16 41 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 42 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 43 H 0.01 0.32 7.57 -51.92 -0.39 -0.07 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -32.63 372.00 -7.74 -40.36 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.38 Total: 1.02 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -3.51 Total: -7.62 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 1.15 Total: -46.35 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.07 Total: -9.57 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.63 -7.74 -40.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455954032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.675 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds