Wall clock time and date at job start Tue Mar 31 2020 10:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38006 * 119.88597 * 2 1 4 4 C 1.39638 * 119.98694 * 180.02562 * 3 2 1 5 5 C 1.43196 * 120.11566 * 180.02562 * 4 3 2 6 6 N 4.80226 * 134.54419 * 0.02562 * 2 1 3 7 7 C 1.39546 * 119.76608 * 0.02562 * 4 3 2 8 8 C 1.38580 * 119.77483 * 0.02562 * 7 4 3 9 9 N 1.39970 * 119.99893 * 179.97438 * 8 7 4 10 10 C 1.34781 * 119.99861 * 35.10377 * 9 8 7 11 11 O 1.21591 * 120.00022 * 355.39048 * 10 9 8 12 12 N 1.34772 * 120.00054 * 175.39034 * 10 9 8 13 13 C 1.46496 * 120.00060 * 179.72590 * 12 10 9 14 14 C 1.53002 * 109.47280 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47017 * 299.99956 * 14 13 12 16 16 C 1.53002 * 109.47317 * 59.99977 * 14 13 12 17 17 C 1.53006 * 109.47342 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.46962 * 179.97438 * 17 14 13 19 19 H 1.07997 * 120.00272 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99406 * 180.02562 * 18 17 14 21 21 N 1.31513 * 119.99326 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00257 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46954 * 90.00471 * 22 20 18 24 24 H 1.48503 * 109.47039 * 209.99975 * 22 20 18 25 25 H 1.48493 * 109.47266 * 330.00437 * 22 20 18 26 26 C 1.38223 * 119.88543 * 180.25831 * 2 1 3 27 27 H 1.09002 * 109.47861 * 90.00110 * 1 2 3 28 28 H 1.09006 * 109.47030 * 209.99732 * 1 2 3 29 29 H 1.08996 * 109.47508 * 329.99406 * 1 2 3 30 30 H 1.07996 * 120.00762 * 0.02895 * 3 2 1 31 31 H 1.07996 * 120.11703 * 180.02562 * 7 4 3 32 32 H 0.97001 * 120.00320 * 215.11006 * 9 8 7 33 33 H 0.96998 * 120.00111 * 0.02562 * 12 10 9 34 34 H 1.09003 * 109.47461 * 299.99794 * 13 12 10 35 35 H 1.08997 * 109.47220 * 60.00317 * 13 12 10 36 36 H 1.09000 * 109.46893 * 60.00140 * 15 14 13 37 37 H 1.08997 * 109.47251 * 179.97438 * 15 14 13 38 38 H 1.09000 * 109.47002 * 300.00291 * 15 14 13 39 39 H 1.09005 * 109.47052 * 60.00101 * 16 14 13 40 40 H 1.08997 * 109.47345 * 180.02562 * 16 14 13 41 41 H 1.09000 * 109.47236 * 300.00254 * 16 14 13 42 42 H 1.08992 * 109.47029 * 300.00090 * 17 14 13 43 43 H 1.09008 * 109.46571 * 59.99960 * 17 14 13 44 44 H 0.97006 * 119.99928 * 179.97438 * 21 20 18 45 45 H 1.08005 * 119.88206 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1965 0.0000 4 6 3.5910 1.1990 -0.0005 5 6 4.3073 2.4389 0.0000 6 7 4.8756 3.4226 0.0015 7 6 4.2859 -0.0111 -0.0016 8 6 3.5855 -1.2069 -0.0027 9 7 4.2778 -2.4234 -0.0043 10 6 5.4413 -2.5375 0.6663 11 8 5.9321 -1.5628 1.2026 12 7 6.0608 -3.7320 0.7426 13 6 7.3285 -3.8548 1.4665 14 6 7.8151 -5.3039 1.4007 15 6 6.7715 -6.2218 2.0405 16 6 8.0213 -5.7069 -0.0608 17 6 9.1395 -5.4320 2.1562 18 6 9.6184 -6.8595 2.0919 19 1 9.0362 -7.6012 1.5653 20 6 10.7993 -7.2187 2.7063 21 7 11.2174 -8.4643 2.6498 22 14 11.8058 -5.9359 3.6178 23 1 11.3724 -5.8835 5.0371 24 1 13.2446 -6.2978 3.5527 25 1 11.6007 -4.6068 2.9882 26 6 2.1957 -1.1984 -0.0054 27 1 -0.3635 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6529 2.1308 0.0005 31 1 5.3659 -0.0158 -0.0016 32 1 3.9203 -3.1843 -0.4882 33 1 5.6695 -4.5095 0.3145 34 1 8.0722 -3.2012 1.0104 35 1 7.1818 -3.5674 2.5076 36 1 5.8283 -6.1305 1.5019 37 1 7.1179 -7.2542 1.9932 38 1 6.6246 -5.9347 3.0817 39 1 8.7648 -5.0529 -0.5166 40 1 8.3675 -6.7393 -0.1077 41 1 7.0781 -5.6155 -0.5995 42 1 9.8827 -4.7782 1.7000 43 1 8.9929 -5.1448 3.1975 44 1 12.0484 -8.7170 3.0817 45 1 1.6519 -2.1316 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455954032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:11 Heat of formation + Delta-G solvation = -9.127525 kcal Electronic energy + Delta-G solvation = -25096.412440 eV Core-core repulsion = 21498.701150 eV Total energy + Delta-G solvation = -3597.711290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.80404 -40.26204 -38.82496 -37.67029 -35.93665 -35.27532 -34.06413 -33.47527 -31.01888 -29.63369 -27.95450 -27.82278 -27.47268 -24.96301 -24.63341 -23.13765 -21.56663 -20.17334 -19.77823 -18.92755 -18.79587 -17.41082 -17.24160 -16.89150 -16.44255 -16.27838 -15.82832 -15.47718 -15.29293 -15.15245 -15.03227 -14.40821 -14.24997 -14.20462 -14.15417 -14.08676 -14.01317 -13.88752 -13.11635 -12.91893 -12.86114 -12.82755 -12.62252 -12.56919 -12.38139 -12.28401 -12.14895 -11.77415 -11.49975 -11.46400 -11.22729 -11.07146 -10.89731 -10.69972 -10.12199 -9.72622 -9.11633 -8.22118 -6.21634 -0.23046 0.30638 1.35467 1.38948 1.46080 1.48263 1.62059 1.79797 2.13188 2.39015 2.79394 2.87497 3.13650 3.22967 3.87509 3.93093 4.08576 4.12827 4.18239 4.18490 4.36025 4.38470 4.63964 4.66474 4.74018 4.81023 4.91657 4.98257 5.02846 5.03860 5.12640 5.19879 5.22636 5.29472 5.33288 5.38177 5.43325 5.48431 5.49558 5.57102 5.58494 5.72538 5.77886 5.94961 5.95415 6.36793 6.38770 6.85438 6.99391 7.41101 7.47553 8.93322 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021829 B = 0.002442 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.417068 B =11461.761163 C =12378.265172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 C -0.082 4.082 4 C -0.023 4.023 5 C 0.278 3.722 6 N -0.467 5.467 7 C -0.099 4.099 8 C 0.160 3.840 9 N -0.670 5.670 10 C 0.699 3.301 11 O -0.618 6.618 12 N -0.717 5.717 13 C 0.157 3.843 14 C -0.056 4.056 15 C -0.124 4.124 16 C -0.124 4.124 17 C -0.006 4.006 18 C -0.499 4.499 19 H 0.055 0.945 20 C 0.006 3.994 21 N -0.950 5.950 22 Si 0.931 3.069 23 H -0.272 1.272 24 H -0.290 1.290 25 H -0.253 1.253 26 C -0.102 4.102 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.152 0.848 31 H 0.120 0.880 32 H 0.429 0.571 33 H 0.413 0.587 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.013 0.987 43 H 0.013 0.987 44 H 0.262 0.738 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.073 13.035 -8.771 31.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.063 4.063 3 C -0.103 4.103 4 C -0.027 4.027 5 C -0.037 4.037 6 N -0.143 5.143 7 C -0.123 4.123 8 C 0.065 3.935 9 N -0.320 5.320 10 C 0.399 3.601 11 O -0.498 6.498 12 N -0.373 5.373 13 C 0.032 3.968 14 C -0.057 4.057 15 C -0.181 4.181 16 C -0.181 4.181 17 C -0.044 4.044 18 C -0.537 4.537 19 H 0.073 0.927 20 C -0.191 4.191 21 N -0.592 5.592 22 Si 0.757 3.243 23 H -0.198 1.198 24 H -0.216 1.216 25 H -0.177 1.177 26 C -0.123 4.123 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.170 0.830 31 H 0.138 0.862 32 H 0.268 0.732 33 H 0.251 0.749 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.071 0.929 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -25.550 15.234 -8.212 30.859 hybrid contribution 1.201 -0.886 0.324 1.527 sum -24.349 14.348 -7.888 29.342 Atomic orbital electron populations 1.20888 0.87694 1.04395 1.03953 1.19904 0.97902 0.90963 0.97507 1.21268 0.90374 1.00214 0.98493 1.15833 0.93029 0.85283 1.08603 1.26040 0.92512 0.92800 0.92327 1.81245 1.09420 1.12896 1.10716 1.21189 1.00645 0.90756 0.99692 1.17350 0.91323 0.84125 1.00715 1.42333 1.22319 1.13621 1.53722 1.16098 0.80872 0.83768 0.79359 1.90932 1.67386 1.38295 1.53210 1.44993 1.24763 1.09418 1.58091 1.21163 0.83576 0.96354 0.95664 1.20549 0.95742 0.92523 0.96886 1.21706 0.97300 0.99278 0.99799 1.21711 1.01054 1.01245 0.94126 1.19588 0.93821 0.95509 0.95443 1.21366 1.05730 0.94489 1.32115 0.92727 1.25812 0.99078 0.96692 0.97491 1.70035 1.23427 1.18923 1.46844 0.85939 0.77837 0.80885 0.79657 1.19760 1.21622 1.17664 1.21334 0.90523 1.00446 1.00011 0.89329 0.89857 0.90355 0.82993 0.86242 0.73163 0.74884 0.92908 0.92677 0.90890 0.93664 0.93733 0.93876 0.93626 0.90913 0.96830 0.96883 0.92911 0.81589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.24 10.00 71.23 0.71 0.47 16 2 C -0.06 -0.50 5.87 -19.92 -0.12 -0.62 16 3 C -0.08 -0.95 9.40 22.55 0.21 -0.74 16 4 C -0.02 -0.44 5.73 -21.38 -0.12 -0.56 16 5 C 0.28 6.63 15.33 88.33 1.35 7.99 16 6 N -0.47 -13.45 18.54 19.00 0.35 -13.10 16 7 C -0.10 -2.14 8.40 22.67 0.19 -1.95 16 8 C 0.16 2.55 6.29 38.10 0.24 2.79 16 9 N -0.67 -9.98 5.34 -317.28 -1.70 -11.67 16 10 C 0.70 16.71 8.41 179.05 1.51 18.22 16 11 O -0.62 -20.71 13.77 -4.00 -0.06 -20.76 16 12 N -0.72 -15.65 4.96 -478.54 -2.37 -18.02 16 13 C 0.16 4.66 4.56 86.38 0.39 5.05 16 14 C -0.06 -1.87 0.54 -52.18 -0.03 -1.90 16 15 C -0.12 -3.77 8.05 71.98 0.58 -3.19 16 16 C -0.12 -3.83 8.05 71.98 0.58 -3.25 16 17 C -0.01 -0.25 3.11 29.85 0.09 -0.16 16 18 C -0.50 -26.49 8.21 25.60 0.21 -26.28 16 19 H 0.05 3.11 5.92 -2.91 -0.02 3.09 16 20 C 0.01 0.31 5.47 84.66 0.46 0.78 16 21 N -0.95 -58.05 13.96 21.45 0.30 -57.75 16 22 Si 0.93 44.22 27.47 68.60 1.88 46.11 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 26 C -0.10 -0.91 9.61 22.45 0.22 -0.69 16 27 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.08 0.03 8.09 -2.38 -0.02 0.01 16 29 H 0.08 0.10 8.08 -2.39 -0.02 0.08 16 30 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 31 H 0.12 3.35 6.22 -2.91 -0.02 3.34 16 32 H 0.43 2.81 8.84 -92.71 -0.82 1.99 16 33 H 0.41 6.35 6.18 -92.71 -0.57 5.78 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 1.59 6.87 -2.39 -0.02 1.57 16 37 H 0.04 1.64 6.62 -2.39 -0.02 1.63 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.04 1.67 6.62 -2.39 -0.02 1.65 16 41 H 0.07 1.61 6.86 -2.39 -0.02 1.59 16 42 H 0.01 0.60 7.20 -2.39 -0.02 0.59 16 43 H 0.01 0.57 7.57 -2.38 -0.02 0.55 16 44 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 45 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 Total: -1.00 -75.46 372.00 4.48 -70.99 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -0.42 Total: 8.24 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 6.48 Total: -4.03 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -3.42 Total: -100.54 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.06 Total: -20.76 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.11 kcal Total: -75.46 4.48 -70.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455954032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.858 kcal (2) G-P(sol) polarization free energy of solvation -75.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds