Wall clock time and date at job start Tue Mar 31 2020 10:51:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.38006 * 119.88597 * 2 1
4 4 C 1.39638 * 119.98694 * 180.02562 * 3 2 1
5 5 C 1.43196 * 120.11566 * 180.02562 * 4 3 2
6 6 N 4.80226 * 134.54419 * 0.02562 * 2 1 3
7 7 C 1.39546 * 119.76608 * 0.02562 * 4 3 2
8 8 C 1.38580 * 119.77483 * 0.02562 * 7 4 3
9 9 N 1.39970 * 119.99893 * 179.97438 * 8 7 4
10 10 C 1.34781 * 119.99861 * 35.10377 * 9 8 7
11 11 O 1.21591 * 120.00022 * 355.39048 * 10 9 8
12 12 N 1.34772 * 120.00054 * 175.39034 * 10 9 8
13 13 C 1.46496 * 120.00060 * 179.72590 * 12 10 9
14 14 C 1.53002 * 109.47280 * 180.02562 * 13 12 10
15 15 C 1.53004 * 109.47017 * 299.99956 * 14 13 12
16 16 C 1.53002 * 109.47317 * 59.99977 * 14 13 12
17 17 C 1.53006 * 109.47342 * 179.97438 * 14 13 12
18 18 C 1.50700 * 109.46962 * 179.97438 * 17 14 13
19 19 H 1.07997 * 120.00272 * 359.97438 * 18 17 14
20 20 C 1.37880 * 119.99406 * 180.02562 * 18 17 14
21 21 N 1.31513 * 119.99326 * 180.02562 * 20 18 17
22 22 Si 1.86799 * 120.00257 * 359.97438 * 20 18 17
23 23 H 1.48499 * 109.46954 * 90.00471 * 22 20 18
24 24 H 1.48503 * 109.47039 * 209.99975 * 22 20 18
25 25 H 1.48493 * 109.47266 * 330.00437 * 22 20 18
26 26 C 1.38223 * 119.88543 * 180.25831 * 2 1 3
27 27 H 1.09002 * 109.47861 * 90.00110 * 1 2 3
28 28 H 1.09006 * 109.47030 * 209.99732 * 1 2 3
29 29 H 1.08996 * 109.47508 * 329.99406 * 1 2 3
30 30 H 1.07996 * 120.00762 * 0.02895 * 3 2 1
31 31 H 1.07996 * 120.11703 * 180.02562 * 7 4 3
32 32 H 0.97001 * 120.00320 * 215.11006 * 9 8 7
33 33 H 0.96998 * 120.00111 * 0.02562 * 12 10 9
34 34 H 1.09003 * 109.47461 * 299.99794 * 13 12 10
35 35 H 1.08997 * 109.47220 * 60.00317 * 13 12 10
36 36 H 1.09000 * 109.46893 * 60.00140 * 15 14 13
37 37 H 1.08997 * 109.47251 * 179.97438 * 15 14 13
38 38 H 1.09000 * 109.47002 * 300.00291 * 15 14 13
39 39 H 1.09005 * 109.47052 * 60.00101 * 16 14 13
40 40 H 1.08997 * 109.47345 * 180.02562 * 16 14 13
41 41 H 1.09000 * 109.47236 * 300.00254 * 16 14 13
42 42 H 1.08992 * 109.47029 * 300.00090 * 17 14 13
43 43 H 1.09008 * 109.46571 * 59.99960 * 17 14 13
44 44 H 0.97006 * 119.99928 * 179.97438 * 21 20 18
45 45 H 1.08005 * 119.88206 * 0.02562 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1946 1.1965 0.0000
4 6 3.5910 1.1990 -0.0005
5 6 4.3073 2.4389 0.0000
6 7 4.8756 3.4226 0.0015
7 6 4.2859 -0.0111 -0.0016
8 6 3.5855 -1.2069 -0.0027
9 7 4.2778 -2.4234 -0.0043
10 6 5.4413 -2.5375 0.6663
11 8 5.9321 -1.5628 1.2026
12 7 6.0608 -3.7320 0.7426
13 6 7.3285 -3.8548 1.4665
14 6 7.8151 -5.3039 1.4007
15 6 6.7715 -6.2218 2.0405
16 6 8.0213 -5.7069 -0.0608
17 6 9.1395 -5.4320 2.1562
18 6 9.6184 -6.8595 2.0919
19 1 9.0362 -7.6012 1.5653
20 6 10.7993 -7.2187 2.7063
21 7 11.2174 -8.4643 2.6498
22 14 11.8058 -5.9359 3.6178
23 1 11.3724 -5.8835 5.0371
24 1 13.2446 -6.2978 3.5527
25 1 11.6007 -4.6068 2.9882
26 6 2.1957 -1.1984 -0.0054
27 1 -0.3635 0.0000 -1.0276
28 1 -0.3633 -0.8901 0.5138
29 1 -0.3634 0.8899 0.5139
30 1 1.6529 2.1308 0.0005
31 1 5.3659 -0.0158 -0.0016
32 1 3.9203 -3.1843 -0.4882
33 1 5.6695 -4.5095 0.3145
34 1 8.0722 -3.2012 1.0104
35 1 7.1818 -3.5674 2.5076
36 1 5.8283 -6.1305 1.5019
37 1 7.1179 -7.2542 1.9932
38 1 6.6246 -5.9347 3.0817
39 1 8.7648 -5.0529 -0.5166
40 1 8.3675 -6.7393 -0.1077
41 1 7.0781 -5.6155 -0.5995
42 1 9.8827 -4.7782 1.7000
43 1 8.9929 -5.1448 3.1975
44 1 12.0484 -8.7170 3.0817
45 1 1.6519 -2.1316 -0.0100
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000455954032.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:51:11
Heat of formation + Delta-G solvation = -9.127525 kcal
Electronic energy + Delta-G solvation = -25096.412440 eV
Core-core repulsion = 21498.701150 eV
Total energy + Delta-G solvation = -3597.711290 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.80404 -40.26204 -38.82496 -37.67029 -35.93665 -35.27532 -34.06413 -33.47527
-31.01888 -29.63369 -27.95450 -27.82278 -27.47268 -24.96301 -24.63341 -23.13765
-21.56663 -20.17334 -19.77823 -18.92755 -18.79587 -17.41082 -17.24160 -16.89150
-16.44255 -16.27838 -15.82832 -15.47718 -15.29293 -15.15245 -15.03227 -14.40821
-14.24997 -14.20462 -14.15417 -14.08676 -14.01317 -13.88752 -13.11635 -12.91893
-12.86114 -12.82755 -12.62252 -12.56919 -12.38139 -12.28401 -12.14895 -11.77415
-11.49975 -11.46400 -11.22729 -11.07146 -10.89731 -10.69972 -10.12199 -9.72622
-9.11633 -8.22118 -6.21634 -0.23046 0.30638 1.35467 1.38948 1.46080
1.48263 1.62059 1.79797 2.13188 2.39015 2.79394 2.87497 3.13650
3.22967 3.87509 3.93093 4.08576 4.12827 4.18239 4.18490 4.36025
4.38470 4.63964 4.66474 4.74018 4.81023 4.91657 4.98257 5.02846
5.03860 5.12640 5.19879 5.22636 5.29472 5.33288 5.38177 5.43325
5.48431 5.49558 5.57102 5.58494 5.72538 5.77886 5.94961 5.95415
6.36793 6.38770 6.85438 6.99391 7.41101 7.47553 8.93322
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.021829 B = 0.002442 C = 0.002261
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1282.417068 B =11461.761163 C =12378.265172
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.062 4.062
3 C -0.082 4.082
4 C -0.023 4.023
5 C 0.278 3.722
6 N -0.467 5.467
7 C -0.099 4.099
8 C 0.160 3.840
9 N -0.670 5.670
10 C 0.699 3.301
11 O -0.618 6.618
12 N -0.717 5.717
13 C 0.157 3.843
14 C -0.056 4.056
15 C -0.124 4.124
16 C -0.124 4.124
17 C -0.006 4.006
18 C -0.499 4.499
19 H 0.055 0.945
20 C 0.006 3.994
21 N -0.950 5.950
22 Si 0.931 3.069
23 H -0.272 1.272
24 H -0.290 1.290
25 H -0.253 1.253
26 C -0.102 4.102
27 H 0.088 0.912
28 H 0.083 0.917
29 H 0.078 0.922
30 H 0.152 0.848
31 H 0.120 0.880
32 H 0.429 0.571
33 H 0.413 0.587
34 H 0.053 0.947
35 H 0.055 0.945
36 H 0.072 0.928
37 H 0.044 0.956
38 H 0.044 0.956
39 H 0.042 0.958
40 H 0.045 0.955
41 H 0.072 0.928
42 H 0.013 0.987
43 H 0.013 0.987
44 H 0.262 0.738
45 H 0.167 0.833
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.073 13.035 -8.771 31.301
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.063 4.063
3 C -0.103 4.103
4 C -0.027 4.027
5 C -0.037 4.037
6 N -0.143 5.143
7 C -0.123 4.123
8 C 0.065 3.935
9 N -0.320 5.320
10 C 0.399 3.601
11 O -0.498 6.498
12 N -0.373 5.373
13 C 0.032 3.968
14 C -0.057 4.057
15 C -0.181 4.181
16 C -0.181 4.181
17 C -0.044 4.044
18 C -0.537 4.537
19 H 0.073 0.927
20 C -0.191 4.191
21 N -0.592 5.592
22 Si 0.757 3.243
23 H -0.198 1.198
24 H -0.216 1.216
25 H -0.177 1.177
26 C -0.123 4.123
27 H 0.107 0.893
28 H 0.101 0.899
29 H 0.096 0.904
30 H 0.170 0.830
31 H 0.138 0.862
32 H 0.268 0.732
33 H 0.251 0.749
34 H 0.071 0.929
35 H 0.073 0.927
36 H 0.091 0.909
37 H 0.063 0.937
38 H 0.063 0.937
39 H 0.061 0.939
40 H 0.064 0.936
41 H 0.091 0.909
42 H 0.032 0.968
43 H 0.031 0.969
44 H 0.071 0.929
45 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges -25.550 15.234 -8.212 30.859
hybrid contribution 1.201 -0.886 0.324 1.527
sum -24.349 14.348 -7.888 29.342
Atomic orbital electron populations
1.20888 0.87694 1.04395 1.03953 1.19904 0.97902 0.90963 0.97507
1.21268 0.90374 1.00214 0.98493 1.15833 0.93029 0.85283 1.08603
1.26040 0.92512 0.92800 0.92327 1.81245 1.09420 1.12896 1.10716
1.21189 1.00645 0.90756 0.99692 1.17350 0.91323 0.84125 1.00715
1.42333 1.22319 1.13621 1.53722 1.16098 0.80872 0.83768 0.79359
1.90932 1.67386 1.38295 1.53210 1.44993 1.24763 1.09418 1.58091
1.21163 0.83576 0.96354 0.95664 1.20549 0.95742 0.92523 0.96886
1.21706 0.97300 0.99278 0.99799 1.21711 1.01054 1.01245 0.94126
1.19588 0.93821 0.95509 0.95443 1.21366 1.05730 0.94489 1.32115
0.92727 1.25812 0.99078 0.96692 0.97491 1.70035 1.23427 1.18923
1.46844 0.85939 0.77837 0.80885 0.79657 1.19760 1.21622 1.17664
1.21334 0.90523 1.00446 1.00011 0.89329 0.89857 0.90355 0.82993
0.86242 0.73163 0.74884 0.92908 0.92677 0.90890 0.93664 0.93733
0.93876 0.93626 0.90913 0.96830 0.96883 0.92911 0.81589
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.24 10.00 71.23 0.71 0.47 16
2 C -0.06 -0.50 5.87 -19.92 -0.12 -0.62 16
3 C -0.08 -0.95 9.40 22.55 0.21 -0.74 16
4 C -0.02 -0.44 5.73 -21.38 -0.12 -0.56 16
5 C 0.28 6.63 15.33 88.33 1.35 7.99 16
6 N -0.47 -13.45 18.54 19.00 0.35 -13.10 16
7 C -0.10 -2.14 8.40 22.67 0.19 -1.95 16
8 C 0.16 2.55 6.29 38.10 0.24 2.79 16
9 N -0.67 -9.98 5.34 -317.28 -1.70 -11.67 16
10 C 0.70 16.71 8.41 179.05 1.51 18.22 16
11 O -0.62 -20.71 13.77 -4.00 -0.06 -20.76 16
12 N -0.72 -15.65 4.96 -478.54 -2.37 -18.02 16
13 C 0.16 4.66 4.56 86.38 0.39 5.05 16
14 C -0.06 -1.87 0.54 -52.18 -0.03 -1.90 16
15 C -0.12 -3.77 8.05 71.98 0.58 -3.19 16
16 C -0.12 -3.83 8.05 71.98 0.58 -3.25 16
17 C -0.01 -0.25 3.11 29.85 0.09 -0.16 16
18 C -0.50 -26.49 8.21 25.60 0.21 -26.28 16
19 H 0.05 3.11 5.92 -2.91 -0.02 3.09 16
20 C 0.01 0.31 5.47 84.66 0.46 0.78 16
21 N -0.95 -58.05 13.96 21.45 0.30 -57.75 16
22 Si 0.93 44.22 27.47 68.60 1.88 46.11 16
23 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16
24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16
25 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16
26 C -0.10 -0.91 9.61 22.45 0.22 -0.69 16
27 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16
28 H 0.08 0.03 8.09 -2.38 -0.02 0.01 16
29 H 0.08 0.10 8.08 -2.39 -0.02 0.08 16
30 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16
31 H 0.12 3.35 6.22 -2.91 -0.02 3.34 16
32 H 0.43 2.81 8.84 -92.71 -0.82 1.99 16
33 H 0.41 6.35 6.18 -92.71 -0.57 5.78 16
34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16
35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16
36 H 0.07 1.59 6.87 -2.39 -0.02 1.57 16
37 H 0.04 1.64 6.62 -2.39 -0.02 1.63 16
38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16
39 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16
40 H 0.04 1.67 6.62 -2.39 -0.02 1.65 16
41 H 0.07 1.61 6.86 -2.39 -0.02 1.59 16
42 H 0.01 0.60 7.20 -2.39 -0.02 0.59 16
43 H 0.01 0.57 7.57 -2.38 -0.02 0.55 16
44 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16
45 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16
Total: -1.00 -75.46 372.00 4.48 -70.99
By element:
Atomic # 1 Polarization: 8.66 SS G_CDS: -0.42 Total: 8.24 kcal
Atomic # 6 Polarization: -10.52 SS G_CDS: 6.48 Total: -4.03 kcal
Atomic # 7 Polarization: -97.12 SS G_CDS: -3.42 Total: -100.54 kcal
Atomic # 8 Polarization: -20.71 SS G_CDS: -0.06 Total: -20.76 kcal
Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.11 kcal
Total: -75.46 4.48 -70.99 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000455954032.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.858 kcal
(2) G-P(sol) polarization free energy of solvation -75.461 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.603 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.128 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds