Wall clock time and date at job start Tue Mar 31 2020 11:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38387 * 120.39582 * 2 1 4 4 C 1.39935 * 118.35313 * 179.71442 * 3 2 1 5 5 C 1.43198 * 120.47199 * 180.28046 * 4 3 2 6 6 N 4.80145 * 136.43166 * 0.30082 * 2 1 3 7 7 C 1.39906 * 119.05910 * 0.57676 * 4 3 2 8 8 N 1.31336 * 120.69888 * 359.68539 * 7 4 3 9 9 C 1.32777 * 121.80539 * 0.02562 * 8 7 4 10 10 C 1.48211 * 119.56641 * 180.02562 * 9 8 7 11 11 O 1.21511 * 120.00112 * 255.80333 * 10 9 8 12 12 N 1.34780 * 119.99718 * 75.79467 * 10 9 8 13 13 C 1.46496 * 120.00316 * 5.09334 * 12 10 9 14 14 C 1.50697 * 109.47382 * 89.99546 * 13 12 10 15 15 H 1.08005 * 119.99651 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00387 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99668 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00074 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47218 * 90.00099 * 18 16 14 20 20 H 1.48505 * 109.47138 * 209.99740 * 18 16 14 21 21 H 1.48494 * 109.47206 * 330.00034 * 18 16 14 22 22 C 1.46500 * 119.99773 * 185.08957 * 12 10 9 23 23 C 1.53004 * 109.46944 * 89.87952 * 22 12 10 24 24 C 1.53002 * 109.47327 * 63.45772 * 23 22 12 25 25 C 1.53004 * 109.47344 * 183.45803 * 23 22 12 26 26 C 1.52998 * 109.47326 * 303.45885 * 23 22 12 27 27 H 1.08998 * 109.46750 * 264.32305 * 1 2 3 28 28 H 1.08995 * 109.46655 * 144.32012 * 1 2 3 29 29 H 1.09001 * 109.46514 * 24.32556 * 1 2 3 30 30 H 1.07994 * 120.82783 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.64750 * 179.70513 * 7 4 3 32 32 H 1.09000 * 109.47165 * 210.00089 * 13 12 10 33 33 H 1.09000 * 109.46957 * 329.99635 * 13 12 10 34 34 H 0.97005 * 119.99787 * 180.02562 * 17 16 14 35 35 H 1.08997 * 109.47296 * 209.87721 * 22 12 10 36 36 H 1.08996 * 109.47639 * 329.87978 * 22 12 10 37 37 H 1.09009 * 109.46636 * 60.00152 * 24 23 22 38 38 H 1.08998 * 109.47663 * 179.97438 * 24 23 22 39 39 H 1.08998 * 109.47118 * 300.00251 * 24 23 22 40 40 H 1.09000 * 109.46944 * 59.99573 * 25 23 22 41 41 H 1.09000 * 109.47565 * 179.97438 * 25 23 22 42 42 H 1.08997 * 109.46953 * 300.00130 * 25 23 22 43 43 H 1.09002 * 109.47272 * 65.52849 * 26 23 22 44 44 H 1.08998 * 109.47606 * 185.53230 * 26 23 22 45 45 H 1.09005 * 109.47145 * 305.53468 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2073 1.1937 0.0000 4 6 3.6057 1.1438 0.0061 5 6 4.3754 2.3513 0.0124 6 7 4.9860 3.3092 0.0174 7 6 4.2413 -0.1026 -0.0003 8 7 3.5398 -1.2129 -0.0057 9 6 2.2121 -1.2018 -0.0059 10 6 1.4701 -2.4848 -0.0116 11 8 0.9426 -2.8771 -1.0335 12 7 1.3805 -3.2164 1.1168 13 6 1.9193 -2.6925 2.3743 14 6 0.8484 -1.9140 3.0941 15 1 -0.1353 -1.8193 2.6585 16 6 1.1245 -1.3225 4.3085 17 7 2.3226 -1.4374 4.8386 18 14 -0.2032 -0.3581 5.2010 19 1 -0.9590 -1.2693 6.0976 20 1 0.4249 0.7200 6.0063 21 1 -1.1309 0.2417 4.2087 22 6 0.7442 -4.5357 1.0858 23 6 1.7970 -5.6026 0.7790 24 6 2.8287 -5.6407 1.9082 25 6 1.1191 -6.9692 0.6613 26 6 2.4962 -5.2650 -0.5394 27 1 -0.3633 -0.1017 1.0226 28 1 -0.3632 -0.8347 -0.5994 29 1 -0.3632 0.9365 -0.4233 30 1 1.6874 2.1402 -0.0004 31 1 5.3202 -0.1521 -0.0005 32 1 2.2498 -3.5208 3.0011 33 1 2.7644 -2.0375 2.1625 34 1 2.5167 -1.0216 5.6932 35 1 0.2890 -4.7424 2.0544 36 1 -0.0241 -4.5505 0.3128 37 1 2.3306 -5.8813 2.8474 38 1 3.5786 -6.4011 1.6899 39 1 3.3117 -4.6672 1.9920 40 1 0.3841 -6.9421 -0.1431 41 1 1.8691 -7.7293 0.4423 42 1 0.6211 -7.2098 1.6005 43 1 3.0604 -4.3394 -0.4248 44 1 3.1758 -6.0738 -0.8079 45 1 1.7506 -5.1411 -1.3248 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000555889819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:46 Heat of formation + Delta-G solvation = 15.006153 kcal Electronic energy + Delta-G solvation = -27369.443324 eV Core-core repulsion = 23772.778550 eV Total energy + Delta-G solvation = -3596.664775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.65619 -39.10130 -36.84932 -36.41377 -34.40104 -33.58066 -32.45841 -32.07645 -27.81965 -27.56573 -26.93067 -26.75483 -26.18924 -24.45930 -22.86784 -22.65150 -19.92175 -18.39350 -18.31293 -17.10451 -16.91138 -16.43630 -15.89250 -14.86793 -14.79201 -14.40620 -14.35072 -13.84343 -13.74234 -13.46897 -13.38600 -13.19284 -13.03834 -12.82631 -12.68621 -12.52062 -12.42295 -12.25029 -12.03472 -11.85005 -11.72430 -11.51719 -11.21998 -11.12516 -11.01634 -10.86986 -10.59946 -10.38421 -10.28048 -10.13373 -9.84262 -9.69980 -9.59896 -9.19160 -8.72399 -8.57826 -7.77991 -6.22921 -4.30482 0.58157 1.32683 2.61194 2.88009 3.09196 3.16836 3.25504 3.26043 3.57888 3.84739 3.97232 4.26188 4.58978 4.77915 4.86176 5.06559 5.10699 5.17430 5.19260 5.23113 5.35940 5.59232 5.69323 5.86180 5.87547 5.93117 5.94894 5.97326 6.13499 6.17451 6.20871 6.23349 6.26780 6.31800 6.41899 6.48608 6.55638 6.60619 6.64472 6.81941 6.86573 7.18988 7.41361 7.43795 7.69917 7.92218 8.00339 8.16546 8.65969 8.82127 9.36610 10.83642 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.009380 B = 0.006344 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.322133 B = 4412.668300 C = 6094.275534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.086 4.086 3 C -0.029 4.029 4 C -0.079 4.079 5 C 0.268 3.732 6 N -0.421 5.421 7 C 0.149 3.851 8 N -0.450 5.450 9 C 0.153 3.847 10 C 0.578 3.422 11 O -0.554 6.554 12 N -0.572 5.572 13 C 0.230 3.770 14 C -0.539 4.539 15 H 0.061 0.939 16 C 0.068 3.932 17 N -0.887 5.887 18 Si 0.890 3.110 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.129 3.871 23 C -0.084 4.084 24 C -0.142 4.142 25 C -0.136 4.136 26 C -0.135 4.135 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.146 0.854 31 H 0.167 0.833 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.265 0.735 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.042 0.958 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 -2.766 -7.601 8.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.088 4.088 3 C -0.057 4.057 4 C -0.085 4.085 5 C -0.048 4.048 6 N -0.096 5.096 7 C -0.014 4.014 8 N -0.159 5.159 9 C 0.014 3.986 10 C 0.363 3.637 11 O -0.434 6.434 12 N -0.300 5.300 13 C 0.110 3.890 14 C -0.578 4.578 15 H 0.080 0.920 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.718 3.282 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C 0.006 3.994 23 C -0.085 4.085 24 C -0.199 4.199 25 C -0.194 4.194 26 C -0.192 4.192 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.164 0.836 31 H 0.184 0.816 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.092 -2.280 -7.922 8.244 hybrid contribution -1.140 1.132 0.964 1.874 sum -1.048 -1.148 -6.958 7.129 Atomic orbital electron populations 1.20911 0.89160 1.03253 1.04458 1.20611 0.98207 0.91786 0.98228 1.21407 0.91574 0.98801 0.93927 1.17030 0.92635 0.89023 1.09825 1.25393 0.93354 0.92664 0.93397 1.81227 1.08670 1.10502 1.09215 1.22817 1.00333 0.85424 0.92795 1.67710 1.06573 1.30223 1.11395 1.21180 0.89915 0.94222 0.93296 1.17672 0.79850 0.82287 0.83916 1.90721 1.48961 1.70945 1.32758 1.48076 1.55876 1.16200 1.09842 1.19663 0.94722 0.95421 0.79161 1.21461 0.98101 1.33414 1.04792 0.92049 1.24896 0.95455 0.96153 0.97038 1.69919 1.19937 1.44039 1.18543 0.86613 0.81807 0.79839 0.79954 1.20467 1.21116 1.19683 1.21457 0.94356 0.81173 1.02442 1.20945 0.96321 0.94913 0.96304 1.21976 0.98231 1.02334 0.97374 1.21788 1.00192 0.95909 1.01473 1.21854 1.00141 1.00870 0.96341 0.88942 0.90212 0.91252 0.83636 0.81588 0.93500 0.94087 0.92527 0.90124 0.90697 0.92743 0.93626 0.91339 0.92805 0.92861 0.92708 0.92445 0.93876 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 9.53 36.01 0.34 -1.43 16 2 C -0.09 -1.38 5.92 -104.15 -0.62 -2.00 16 3 C -0.03 -0.40 9.55 -38.89 -0.37 -0.77 16 4 C -0.08 -1.10 5.75 -106.71 -0.61 -1.71 16 5 C 0.27 3.73 15.36 -22.48 -0.35 3.39 16 6 N -0.42 -6.51 18.54 41.84 0.78 -5.74 16 7 C 0.15 2.16 10.92 -17.14 -0.19 1.97 16 8 N -0.45 -7.89 9.63 -9.47 -0.09 -7.98 16 9 C 0.15 2.82 4.89 -82.95 -0.41 2.41 16 10 C 0.58 11.24 4.39 -12.16 -0.05 11.19 16 11 O -0.55 -11.31 14.41 5.36 0.08 -11.24 16 12 N -0.57 -11.10 1.99 -176.04 -0.35 -11.45 16 13 C 0.23 5.12 4.06 -5.20 -0.02 5.10 16 14 C -0.54 -12.99 9.39 -34.44 -0.32 -13.31 16 15 H 0.06 1.48 7.75 -52.48 -0.41 1.07 16 16 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -23.52 13.29 55.43 0.74 -22.78 16 18 Si 0.89 19.59 29.54 -169.99 -5.02 14.56 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 C 0.13 2.20 4.61 -4.04 -0.02 2.18 16 23 C -0.08 -1.26 0.85 -154.50 -0.13 -1.39 16 24 C -0.14 -2.20 7.38 37.16 0.27 -1.92 16 25 C -0.14 -1.68 8.47 37.16 0.31 -1.36 16 26 C -0.13 -2.12 7.13 37.16 0.26 -1.85 16 27 H 0.09 1.50 8.08 -51.93 -0.42 1.08 16 28 H 0.08 1.24 6.81 -51.93 -0.35 0.89 16 29 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 30 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.17 1.89 8.06 -52.48 -0.42 1.47 16 32 H 0.05 1.10 6.02 -51.93 -0.31 0.79 16 33 H 0.04 0.99 6.31 -51.93 -0.33 0.66 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 36 H 0.07 1.27 7.36 -51.93 -0.38 0.89 16 37 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.22 5.93 -51.93 -0.31 0.91 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 1.02 6.69 -51.93 -0.35 0.68 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 1.00 7.29 -51.93 -0.38 0.62 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -27.85 374.02 -6.82 -34.67 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.59 Total: 2.23 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.99 Total: 2.09 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 1.07 Total: -47.95 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -27.85 -6.82 -34.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555889819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.674 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds