Wall clock time and date at job start Tue Mar 31 2020 11:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38387 * 120.39582 * 2 1 4 4 C 1.39935 * 118.35313 * 179.71442 * 3 2 1 5 5 C 1.43198 * 120.47199 * 180.28046 * 4 3 2 6 6 N 4.80145 * 136.43166 * 0.30082 * 2 1 3 7 7 C 1.39906 * 119.05910 * 0.57676 * 4 3 2 8 8 N 1.31336 * 120.69888 * 359.68539 * 7 4 3 9 9 C 1.32777 * 121.80539 * 0.02562 * 8 7 4 10 10 C 1.48211 * 119.56641 * 180.02562 * 9 8 7 11 11 O 1.21511 * 120.00112 * 255.80333 * 10 9 8 12 12 N 1.34780 * 119.99718 * 75.79467 * 10 9 8 13 13 C 1.46496 * 120.00316 * 5.09334 * 12 10 9 14 14 C 1.50697 * 109.47382 * 89.99546 * 13 12 10 15 15 H 1.08005 * 119.99651 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00387 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99668 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00074 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47218 * 90.00099 * 18 16 14 20 20 H 1.48505 * 109.47138 * 209.99740 * 18 16 14 21 21 H 1.48494 * 109.47206 * 330.00034 * 18 16 14 22 22 C 1.46500 * 119.99773 * 185.08957 * 12 10 9 23 23 C 1.53004 * 109.46944 * 89.87952 * 22 12 10 24 24 C 1.53002 * 109.47327 * 63.45772 * 23 22 12 25 25 C 1.53004 * 109.47344 * 183.45803 * 23 22 12 26 26 C 1.52998 * 109.47326 * 303.45885 * 23 22 12 27 27 H 1.08998 * 109.46750 * 264.32305 * 1 2 3 28 28 H 1.08995 * 109.46655 * 144.32012 * 1 2 3 29 29 H 1.09001 * 109.46514 * 24.32556 * 1 2 3 30 30 H 1.07994 * 120.82783 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.64750 * 179.70513 * 7 4 3 32 32 H 1.09000 * 109.47165 * 210.00089 * 13 12 10 33 33 H 1.09000 * 109.46957 * 329.99635 * 13 12 10 34 34 H 0.97005 * 119.99787 * 180.02562 * 17 16 14 35 35 H 1.08997 * 109.47296 * 209.87721 * 22 12 10 36 36 H 1.08996 * 109.47639 * 329.87978 * 22 12 10 37 37 H 1.09009 * 109.46636 * 60.00152 * 24 23 22 38 38 H 1.08998 * 109.47663 * 179.97438 * 24 23 22 39 39 H 1.08998 * 109.47118 * 300.00251 * 24 23 22 40 40 H 1.09000 * 109.46944 * 59.99573 * 25 23 22 41 41 H 1.09000 * 109.47565 * 179.97438 * 25 23 22 42 42 H 1.08997 * 109.46953 * 300.00130 * 25 23 22 43 43 H 1.09002 * 109.47272 * 65.52849 * 26 23 22 44 44 H 1.08998 * 109.47606 * 185.53230 * 26 23 22 45 45 H 1.09005 * 109.47145 * 305.53468 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2073 1.1937 0.0000 4 6 3.6057 1.1438 0.0061 5 6 4.3754 2.3513 0.0124 6 7 4.9860 3.3092 0.0174 7 6 4.2413 -0.1026 -0.0003 8 7 3.5398 -1.2129 -0.0057 9 6 2.2121 -1.2018 -0.0059 10 6 1.4701 -2.4848 -0.0116 11 8 0.9426 -2.8771 -1.0335 12 7 1.3805 -3.2164 1.1168 13 6 1.9193 -2.6925 2.3743 14 6 0.8484 -1.9140 3.0941 15 1 -0.1353 -1.8193 2.6585 16 6 1.1245 -1.3225 4.3085 17 7 2.3226 -1.4374 4.8386 18 14 -0.2032 -0.3581 5.2010 19 1 -0.9590 -1.2693 6.0976 20 1 0.4249 0.7200 6.0063 21 1 -1.1309 0.2417 4.2087 22 6 0.7442 -4.5357 1.0858 23 6 1.7970 -5.6026 0.7790 24 6 2.8287 -5.6407 1.9082 25 6 1.1191 -6.9692 0.6613 26 6 2.4962 -5.2650 -0.5394 27 1 -0.3633 -0.1017 1.0226 28 1 -0.3632 -0.8347 -0.5994 29 1 -0.3632 0.9365 -0.4233 30 1 1.6874 2.1402 -0.0004 31 1 5.3202 -0.1521 -0.0005 32 1 2.2498 -3.5208 3.0011 33 1 2.7644 -2.0375 2.1625 34 1 2.5167 -1.0216 5.6932 35 1 0.2890 -4.7424 2.0544 36 1 -0.0241 -4.5505 0.3128 37 1 2.3306 -5.8813 2.8474 38 1 3.5786 -6.4011 1.6899 39 1 3.3117 -4.6672 1.9920 40 1 0.3841 -6.9421 -0.1431 41 1 1.8691 -7.7293 0.4423 42 1 0.6211 -7.2098 1.6005 43 1 3.0604 -4.3394 -0.4248 44 1 3.1758 -6.0738 -0.8079 45 1 1.7506 -5.1411 -1.3248 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000555889819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:45 Heat of formation + Delta-G solvation = 1.505637 kcal Electronic energy + Delta-G solvation = -27370.028751 eV Core-core repulsion = 23772.778550 eV Total energy + Delta-G solvation = -3597.250201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.97230 -40.47493 -38.16397 -37.67356 -36.01043 -34.79085 -34.25093 -33.31359 -29.51920 -28.84095 -28.08607 -28.05466 -27.53254 -25.83763 -24.59374 -23.84739 -21.29766 -19.65063 -19.53891 -18.75870 -18.32897 -17.99177 -17.38332 -16.51254 -16.20502 -15.80960 -15.60403 -15.07789 -14.93756 -14.73542 -14.63076 -14.46225 -14.33801 -14.26960 -14.03389 -14.00900 -13.64430 -13.57688 -13.40738 -13.19463 -12.99993 -12.88830 -12.73733 -12.58940 -12.43994 -12.40998 -12.06644 -11.97978 -11.65124 -11.49537 -11.45770 -11.13823 -10.83649 -10.61315 -10.46570 -9.94580 -9.37824 -8.14771 -6.28225 -0.64045 0.15883 1.42287 1.44692 1.46354 1.51501 1.54069 1.79338 2.18677 2.44329 2.64467 2.75927 3.16565 3.28783 3.59467 3.70539 3.87549 3.94219 3.96398 4.01648 4.11522 4.41032 4.54718 4.62031 4.64551 4.78240 4.79568 4.83434 4.86367 4.91988 4.98980 4.99585 5.06254 5.11210 5.12817 5.13503 5.27076 5.29270 5.38812 5.41989 5.54185 5.57436 5.71403 5.86593 6.12062 6.27263 6.52976 6.69699 6.84244 7.21209 7.43328 8.90465 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.009380 B = 0.006344 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.322133 B = 4412.668300 C = 6094.275534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.100 4.100 3 C -0.017 4.017 4 C -0.071 4.071 5 C 0.290 3.710 6 N -0.441 5.441 7 C 0.147 3.853 8 N -0.475 5.475 9 C 0.122 3.878 10 C 0.578 3.422 11 O -0.570 6.570 12 N -0.574 5.574 13 C 0.250 3.750 14 C -0.537 4.537 15 H 0.059 0.941 16 C 0.025 3.975 17 N -0.919 5.919 18 Si 0.945 3.055 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.260 1.260 22 C 0.124 3.876 23 C -0.080 4.080 24 C -0.135 4.135 25 C -0.129 4.129 26 C -0.125 4.125 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.182 0.818 31 H 0.194 0.806 32 H 0.032 0.968 33 H 0.022 0.978 34 H 0.264 0.736 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.029 0.971 44 H 0.062 0.938 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 -2.287 -7.951 8.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.103 4.103 3 C -0.045 4.045 4 C -0.077 4.077 5 C -0.026 4.026 6 N -0.117 5.117 7 C -0.016 4.016 8 N -0.184 5.184 9 C -0.017 4.017 10 C 0.364 3.636 11 O -0.451 6.451 12 N -0.302 5.302 13 C 0.129 3.871 14 C -0.576 4.576 15 H 0.077 0.923 16 C -0.175 4.175 17 N -0.558 5.558 18 Si 0.771 3.229 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.184 1.184 22 C 0.002 3.998 23 C -0.081 4.081 24 C -0.193 4.193 25 C -0.187 4.187 26 C -0.182 4.182 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.125 0.875 30 H 0.199 0.801 31 H 0.211 0.789 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.048 0.952 44 H 0.081 0.919 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.548 -1.816 -8.289 8.503 hybrid contribution -0.893 0.982 1.029 1.680 sum -1.442 -0.834 -7.259 7.448 Atomic orbital electron populations 1.20876 0.88329 1.04692 1.03289 1.20835 0.98986 0.91832 0.98616 1.21783 0.91523 0.99384 0.91801 1.17015 0.92834 0.88693 1.09172 1.25134 0.92699 0.92107 0.92642 1.81266 1.09303 1.11187 1.09942 1.23293 1.01527 0.85041 0.91700 1.67666 1.06570 1.31752 1.12461 1.21177 0.90559 0.94387 0.95533 1.17895 0.79515 0.82699 0.83454 1.90688 1.49762 1.71591 1.33034 1.48012 1.56001 1.17077 1.09062 1.19224 0.93745 0.94266 0.79833 1.21661 0.98218 1.32959 1.04730 0.92253 1.25552 0.97052 0.97085 0.97809 1.70029 1.21616 1.45261 1.18904 0.85745 0.79709 0.78522 0.78964 1.20365 1.21407 1.18428 1.21619 0.95047 0.80906 1.02239 1.20931 0.95704 0.95855 0.95620 1.21890 0.98624 1.01200 0.97552 1.21738 1.00589 0.94152 1.02238 1.21744 0.99879 1.00248 0.96360 0.90698 0.91702 0.87500 0.80052 0.78892 0.95015 0.95956 0.92699 0.90439 0.90727 0.92912 0.91671 0.94330 0.92198 0.91244 0.91894 0.95172 0.91858 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.26 9.53 71.24 0.68 -2.58 16 2 C -0.10 -3.15 5.92 -19.56 -0.12 -3.27 16 3 C -0.02 -0.44 9.55 22.72 0.22 -0.22 16 4 C -0.07 -1.85 5.75 -21.22 -0.12 -1.98 16 5 C 0.29 7.46 15.36 88.33 1.36 8.82 16 6 N -0.44 -12.82 18.54 19.00 0.35 -12.47 16 7 C 0.15 4.15 10.92 85.17 0.93 5.08 16 8 N -0.48 -16.85 9.63 -183.86 -1.77 -18.62 16 9 C 0.12 4.53 4.89 41.92 0.20 4.73 16 10 C 0.58 23.08 4.39 86.89 0.38 23.46 16 11 O -0.57 -23.83 14.41 -3.75 -0.05 -23.88 16 12 N -0.57 -22.89 1.99 -829.16 -1.65 -24.55 16 13 C 0.25 11.47 4.06 85.63 0.35 11.82 16 14 C -0.54 -26.15 9.39 25.60 0.24 -25.91 16 15 H 0.06 2.87 7.75 -2.91 -0.02 2.84 16 16 C 0.03 1.27 5.46 84.65 0.46 1.73 16 17 N -0.92 -49.30 13.29 21.45 0.28 -49.02 16 18 Si 0.94 39.77 29.54 68.60 2.03 41.80 16 19 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 22 C 0.12 4.30 4.61 86.38 0.40 4.70 16 23 C -0.08 -2.37 0.85 -52.18 -0.04 -2.42 16 24 C -0.14 -4.19 7.38 71.98 0.53 -3.66 16 25 C -0.13 -2.95 8.47 71.98 0.61 -2.34 16 26 C -0.12 -3.91 7.13 71.98 0.51 -3.40 16 27 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 28 H 0.06 2.02 6.81 -2.39 -0.02 2.00 16 29 H 0.11 2.14 8.06 -2.39 -0.02 2.12 16 30 H 0.18 3.21 8.06 -2.91 -0.02 3.18 16 31 H 0.19 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.03 1.55 6.02 -2.39 -0.01 1.53 16 33 H 0.02 1.12 6.31 -2.39 -0.02 1.10 16 34 H 0.26 13.62 8.31 -92.70 -0.77 12.85 16 35 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 36 H 0.07 2.57 7.36 -2.39 -0.02 2.55 16 37 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 39 H 0.04 1.41 5.93 -2.39 -0.01 1.40 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.03 1.09 6.69 -2.39 -0.02 1.07 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.05 1.65 7.29 -2.38 -0.02 1.64 16 Total: -1.00 -60.60 374.02 6.77 -53.83 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 1.00 Total: 18.33 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 6.59 Total: 14.58 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -2.79 Total: -104.66 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -60.60 6.77 -53.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555889819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.338 kcal (2) G-P(sol) polarization free energy of solvation -60.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds