Wall clock time and date at job start Tue Mar 31 2020 10:35:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52999 * 109.72291 * 2 1
4 4 C 1.53357 * 109.69484 * 239.43032 * 2 1 3
5 5 C 1.52743 * 108.39977 * 171.19828 * 4 2 1
6 6 C 1.50579 * 110.60176 * 50.90447 * 5 4 2
7 7 N 1.34265 * 117.89896 * 162.33360 * 6 5 4
8 8 C 1.30341 * 122.00131 * 179.07671 * 7 6 5
9 9 N 1.34757 * 121.37125 * 0.02562 * 8 7 6
10 10 C 1.46497 * 120.18557 * 180.27065 * 9 8 7
11 11 C 1.52999 * 109.47271 * 90.00217 * 10 9 8
12 12 H 1.09001 * 109.46617 * 55.00145 * 11 10 9
13 13 C 1.47200 * 109.46851 * 295.00203 * 11 10 9
14 14 N 7.46597 * 159.58467 * 74.80725 * 2 1 3
15 15 C 1.53002 * 109.47329 * 174.99952 * 11 10 9
16 16 C 1.50696 * 109.46919 * 185.00033 * 15 11 10
17 17 H 1.07999 * 120.00202 * 359.97438 * 16 15 11
18 18 C 1.37884 * 119.99746 * 180.02562 * 16 15 11
19 19 N 1.31514 * 119.99573 * 0.27650 * 18 16 15
20 20 Si 1.86800 * 119.99781 * 179.97438 * 18 16 15
21 21 H 1.48501 * 109.47364 * 359.97438 * 20 18 16
22 22 H 1.48508 * 109.46883 * 120.00040 * 20 18 16
23 23 H 1.48497 * 109.46870 * 239.99850 * 20 18 16
24 24 C 1.34833 * 119.63492 * 0.55284 * 9 8 7
25 25 O 1.21979 * 120.54433 * 179.67100 * 24 9 8
26 26 C 1.35431 * 122.67924 * 341.91770 * 6 5 4
27 27 C 1.50393 * 123.10608 * 1.15911 * 26 6 5
28 28 H 1.08994 * 109.47017 * 299.42857 * 1 2 3
29 29 H 1.08996 * 109.47292 * 59.43220 * 1 2 3
30 30 H 1.09007 * 109.47019 * 179.43197 * 1 2 3
31 31 H 1.09004 * 109.47127 * 180.57140 * 3 2 1
32 32 H 1.08996 * 109.47051 * 300.56934 * 3 2 1
33 33 H 1.08996 * 109.47055 * 60.56696 * 3 2 1
34 34 H 1.09003 * 109.67748 * 290.92009 * 4 2 1
35 35 H 1.08998 * 109.67474 * 51.43077 * 4 2 1
36 36 H 1.09006 * 109.25110 * 290.61264 * 5 4 2
37 37 H 1.09005 * 109.24899 * 171.19713 * 5 4 2
38 38 H 1.08011 * 119.31606 * 180.02562 * 8 7 6
39 39 H 1.09008 * 109.46938 * 330.00318 * 10 9 8
40 40 H 1.09005 * 109.47398 * 210.00600 * 10 9 8
41 41 H 1.09000 * 109.46497 * 65.00298 * 15 11 10
42 42 H 1.08999 * 109.46623 * 305.00362 * 15 11 10
43 43 H 0.97001 * 120.00651 * 359.71956 * 19 18 16
44 44 H 1.09002 * 109.25380 * 102.42448 * 27 26 6
45 45 H 1.09001 * 109.25980 * 221.89462 * 27 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0463 1.4402 0.0000
4 6 2.0468 -0.7343 -1.2432
5 6 3.5578 -0.5287 -1.3312
6 6 4.2163 -0.8712 -0.0211
7 7 5.5401 -1.0956 -0.0230
8 6 6.1940 -1.3804 1.0679
9 7 5.5689 -1.4644 2.2588
10 6 6.3305 -1.7803 3.4697
11 6 6.8277 -0.4839 4.1124
12 1 5.9821 0.1802 4.2916
13 6 7.7863 0.1747 3.2101
14 7 8.5270 0.6825 2.5133
15 6 7.5151 -0.8043 5.4412
16 6 7.8955 0.4797 6.1323
17 1 7.6700 1.4293 5.6698
18 6 8.5326 0.4422 7.3545
19 7 8.8130 -0.7142 7.9146
20 14 9.0048 2.0338 8.2109
21 1 8.5879 3.1883 7.3750
22 1 8.3262 2.1064 9.5299
23 1 10.4761 2.0719 8.4083
24 6 4.2378 -1.2616 2.3289
25 8 3.6542 -1.3395 3.3972
26 6 3.5298 -0.9511 1.1436
27 6 2.0450 -0.7316 1.2386
28 1 -0.3633 0.5049 0.8950
29 1 -0.3633 0.5226 -0.8848
30 1 -0.3633 -1.0277 -0.0102
31 1 3.1363 1.4355 -0.0102
32 1 1.6770 1.9586 -0.8848
33 1 1.6936 1.9526 0.8950
34 1 1.8255 -1.7984 -1.1595
35 1 1.5680 -0.3288 -2.1345
36 1 3.7651 0.5130 -1.5762
37 1 3.9625 -1.1690 -2.1151
38 1 7.2591 -1.5526 1.0164
39 1 7.1835 -2.4071 3.2093
40 1 5.6901 -2.3123 4.1733
41 1 8.4116 -1.3951 5.2531
42 1 6.8332 -1.3703 6.0757
43 1 8.5681 -1.5407 7.4698
44 1 1.5436 -1.6960 1.3208
45 1 1.8255 -0.1358 2.1245
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000563147242.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:35:37
Heat of formation + Delta-G solvation = -0.366618 kcal
Electronic energy + Delta-G solvation = -26495.541952 eV
Core-core repulsion = 22898.210564 eV
Total energy + Delta-G solvation = -3597.331388 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.12355 -39.28126 -37.61552 -37.08151 -35.05633 -33.99931 -32.23671 -31.47798
-31.22123 -27.56246 -27.27755 -27.18534 -24.79561 -23.82594 -23.05572 -22.28672
-22.02072 -19.05377 -18.32108 -17.76177 -16.92989 -16.69510 -16.31965 -15.88093
-15.27619 -14.76286 -14.60845 -14.27322 -14.18815 -13.93296 -13.84559 -13.66729
-13.20508 -13.07133 -12.86948 -12.73891 -12.41454 -12.33081 -12.07383 -12.00446
-11.94761 -11.87227 -11.60173 -11.42237 -11.00013 -10.93548 -10.84311 -10.70628
-10.58667 -10.35142 -10.19234 -10.02159 -9.98385 -9.84318 -8.78623 -8.48142
-8.31118 -6.51440 -4.23795 0.58827 1.82820 2.42131 3.17871 3.29517
3.39743 3.42274 3.53671 3.56320 3.83876 4.19263 4.34788 4.43198
4.45910 4.50284 4.55219 4.63378 4.90296 5.00061 5.06695 5.09338
5.11492 5.27034 5.29906 5.34382 5.46075 5.48469 5.50410 5.60401
5.64437 5.69858 5.72317 5.75308 5.87850 5.91085 5.96255 6.05516
6.10528 6.16210 6.24841 6.33063 6.55614 6.94098 7.06300 7.73199
7.84241 7.90510 8.03604 8.28585 8.70541 9.47009 10.89525
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.020257 B = 0.003221 C = 0.003091
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1381.883560 B = 8692.081611 C = 9055.161502
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.067 4.067
3 C -0.144 4.144
4 C -0.108 4.108
5 C -0.071 4.071
6 C 0.173 3.827
7 N -0.544 5.544
8 C 0.375 3.625
9 N -0.522 5.522
10 C 0.095 3.905
11 C 0.002 3.998
12 H 0.111 0.889
13 C 0.229 3.771
14 N -0.452 5.452
15 C 0.022 3.978
16 C -0.608 4.608
17 H 0.051 0.949
18 C 0.023 3.977
19 N -0.906 5.906
20 Si 1.071 2.929
21 H -0.289 1.289
22 H -0.284 1.284
23 H -0.286 1.286
24 C 0.519 3.481
25 O -0.526 6.526
26 C -0.242 4.242
27 C -0.041 4.041
28 H 0.057 0.943
29 H 0.056 0.944
30 H 0.056 0.944
31 H 0.057 0.943
32 H 0.056 0.944
33 H 0.056 0.944
34 H 0.068 0.932
35 H 0.074 0.926
36 H 0.091 0.909
37 H 0.087 0.913
38 H 0.196 0.804
39 H 0.102 0.898
40 H 0.122 0.878
41 H 0.021 0.979
42 H 0.035 0.965
43 H 0.270 0.730
44 H 0.074 0.926
45 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.142 -3.135 -18.360 23.387
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.067 4.067
3 C -0.201 4.201
4 C -0.146 4.146
5 C -0.109 4.109
6 C 0.056 3.944
7 N -0.265 5.265
8 C 0.090 3.910
9 N -0.239 5.239
10 C -0.028 4.028
11 C -0.021 4.021
12 H 0.128 0.872
13 C -0.088 4.088
14 N -0.129 5.129
15 C -0.017 4.017
16 C -0.646 4.646
17 H 0.070 0.930
18 C -0.182 4.182
19 N -0.542 5.542
20 Si 0.900 3.100
21 H -0.215 1.215
22 H -0.210 1.210
23 H -0.212 1.212
24 C 0.317 3.683
25 O -0.403 6.403
26 C -0.248 4.248
27 C -0.079 4.079
28 H 0.076 0.924
29 H 0.075 0.925
30 H 0.075 0.925
31 H 0.076 0.924
32 H 0.075 0.925
33 H 0.075 0.925
34 H 0.087 0.913
35 H 0.093 0.907
36 H 0.109 0.891
37 H 0.106 0.894
38 H 0.213 0.787
39 H 0.120 0.880
40 H 0.140 0.860
41 H 0.039 0.961
42 H 0.053 0.947
43 H 0.081 0.919
44 H 0.092 0.908
45 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -12.441 -1.724 -18.132 22.057
hybrid contribution -1.081 -0.780 -0.242 1.355
sum -13.521 -2.504 -18.374 22.950
Atomic orbital electron populations
1.21819 0.93906 1.01894 1.01979 1.20591 0.95614 0.95623 0.94842
1.21938 1.01411 0.94968 1.01798 1.21661 0.94057 1.00907 0.97941
1.20413 0.94695 1.03041 0.92729 1.20792 0.88540 0.90060 0.95054
1.68281 1.09440 1.22401 1.26426 1.24797 0.99356 0.87283 0.79603
1.46894 1.10501 1.56173 1.10370 1.22353 0.96778 0.98107 0.85560
1.19437 0.94858 0.93893 0.93895 0.87161 1.29124 0.93782 0.93446
0.92434 1.81120 1.10401 1.08918 1.12438 1.19281 0.95412 0.98951
0.88025 1.21955 1.43447 0.92056 1.07182 0.93025 1.25796 0.93775
1.03641 0.94980 1.70754 1.44351 0.98129 1.40942 0.83496 0.76760
0.73997 0.75788 1.21490 1.21044 1.21223 1.17285 0.80645 0.79450
0.90911 1.90959 1.66797 1.52278 1.30253 1.21045 0.98869 1.12886
0.92043 1.20072 0.88906 1.00721 0.98183 0.92351 0.92458 0.92516
0.92428 0.92539 0.92465 0.91345 0.90737 0.89095 0.89415 0.78723
0.87989 0.85982 0.96084 0.94681 0.91937 0.90788 0.90160
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.00 8.49 37.16 0.32 -0.69 16
2 C -0.07 -0.58 0.79 -154.43 -0.12 -0.70 16
3 C -0.14 -1.32 7.78 37.16 0.29 -1.03 16
4 C -0.11 -0.83 4.95 -26.68 -0.13 -0.96 16
5 C -0.07 -0.65 5.32 -28.07 -0.15 -0.80 16
6 C 0.17 2.12 5.92 -82.59 -0.49 1.63 16
7 N -0.54 -7.05 10.25 -10.81 -0.11 -7.17 16
8 C 0.37 4.71 10.41 -90.77 -0.94 3.76 16
9 N -0.52 -7.23 2.48 -121.07 -0.30 -7.53 16
10 C 0.09 1.31 4.88 -4.04 -0.02 1.29 16
11 C 0.00 0.03 2.42 -93.41 -0.23 -0.20 16
12 H 0.11 2.10 8.14 -51.93 -0.42 1.68 16
13 C 0.23 4.37 12.65 -20.74 -0.26 4.11 16
14 N -0.45 -9.17 18.54 42.18 0.78 -8.39 16
15 C 0.02 0.48 3.74 -27.88 -0.10 0.38 16
16 C -0.61 -16.09 8.60 -34.44 -0.30 -16.39 16
17 H 0.05 1.40 7.59 -52.49 -0.40 1.00 16
18 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16
19 N -0.91 -26.13 13.65 55.43 0.76 -25.37 16
20 Si 1.07 24.90 29.90 -169.99 -5.08 19.82 16
21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16
22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16
23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16
24 C 0.52 8.09 7.42 -14.99 -0.11 7.98 16
25 O -0.53 -9.67 15.95 4.94 0.08 -9.59 16
26 C -0.24 -3.23 5.32 -104.53 -0.56 -3.79 16
27 C -0.04 -0.47 4.11 -28.14 -0.12 -0.58 16
28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
30 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16
31 H 0.06 0.61 5.59 -51.93 -0.29 0.32 16
32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
34 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16
35 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16
36 H 0.09 0.80 6.81 -51.93 -0.35 0.44 16
37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16
38 H 0.20 2.03 7.95 -52.48 -0.42 1.61 16
39 H 0.10 1.11 8.02 -51.92 -0.42 0.70 16
40 H 0.12 1.70 7.45 -51.93 -0.39 1.31 16
41 H 0.02 0.47 8.00 -51.93 -0.42 0.06 16
42 H 0.04 0.78 8.01 -51.93 -0.42 0.37 16
43 H 0.27 7.57 7.22 -40.82 -0.29 7.27 16
44 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16
45 H 0.08 1.04 7.84 -51.93 -0.41 0.63 16
LS Contribution 366.18 15.07 5.52 5.52
Total: -1.00 -32.02 366.18 -8.20 -40.21
By element:
Atomic # 1 Polarization: 4.77 SS G_CDS: -6.82 Total: -2.04 kcal
Atomic # 6 Polarization: -2.44 SS G_CDS: -3.02 Total: -5.46 kcal
Atomic # 7 Polarization: -49.58 SS G_CDS: 1.13 Total: -48.46 kcal
Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal
Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.82 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -32.02 -8.20 -40.21 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000563147242.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.846 kcal
(2) G-P(sol) polarization free energy of solvation -32.017 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.829 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.367 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds