Wall clock time and date at job start Tue Mar 31 2020 10:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.72291 * 2 1 4 4 C 1.53357 * 109.69484 * 239.43032 * 2 1 3 5 5 C 1.52743 * 108.39977 * 171.19828 * 4 2 1 6 6 C 1.50579 * 110.60176 * 50.90447 * 5 4 2 7 7 N 1.34265 * 117.89896 * 162.33360 * 6 5 4 8 8 C 1.30341 * 122.00131 * 179.07671 * 7 6 5 9 9 N 1.34757 * 121.37125 * 0.02562 * 8 7 6 10 10 C 1.46497 * 120.18557 * 180.27065 * 9 8 7 11 11 C 1.52999 * 109.47271 * 90.00217 * 10 9 8 12 12 H 1.09001 * 109.46617 * 55.00145 * 11 10 9 13 13 C 1.47200 * 109.46851 * 295.00203 * 11 10 9 14 14 N 7.46597 * 159.58467 * 74.80725 * 2 1 3 15 15 C 1.53002 * 109.47329 * 174.99952 * 11 10 9 16 16 C 1.50696 * 109.46919 * 185.00033 * 15 11 10 17 17 H 1.07999 * 120.00202 * 359.97438 * 16 15 11 18 18 C 1.37884 * 119.99746 * 180.02562 * 16 15 11 19 19 N 1.31514 * 119.99573 * 0.27650 * 18 16 15 20 20 Si 1.86800 * 119.99781 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47364 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.46883 * 120.00040 * 20 18 16 23 23 H 1.48497 * 109.46870 * 239.99850 * 20 18 16 24 24 C 1.34833 * 119.63492 * 0.55284 * 9 8 7 25 25 O 1.21979 * 120.54433 * 179.67100 * 24 9 8 26 26 C 1.35431 * 122.67924 * 341.91770 * 6 5 4 27 27 C 1.50393 * 123.10608 * 1.15911 * 26 6 5 28 28 H 1.08994 * 109.47017 * 299.42857 * 1 2 3 29 29 H 1.08996 * 109.47292 * 59.43220 * 1 2 3 30 30 H 1.09007 * 109.47019 * 179.43197 * 1 2 3 31 31 H 1.09004 * 109.47127 * 180.57140 * 3 2 1 32 32 H 1.08996 * 109.47051 * 300.56934 * 3 2 1 33 33 H 1.08996 * 109.47055 * 60.56696 * 3 2 1 34 34 H 1.09003 * 109.67748 * 290.92009 * 4 2 1 35 35 H 1.08998 * 109.67474 * 51.43077 * 4 2 1 36 36 H 1.09006 * 109.25110 * 290.61264 * 5 4 2 37 37 H 1.09005 * 109.24899 * 171.19713 * 5 4 2 38 38 H 1.08011 * 119.31606 * 180.02562 * 8 7 6 39 39 H 1.09008 * 109.46938 * 330.00318 * 10 9 8 40 40 H 1.09005 * 109.47398 * 210.00600 * 10 9 8 41 41 H 1.09000 * 109.46497 * 65.00298 * 15 11 10 42 42 H 1.08999 * 109.46623 * 305.00362 * 15 11 10 43 43 H 0.97001 * 120.00651 * 359.71956 * 19 18 16 44 44 H 1.09002 * 109.25380 * 102.42448 * 27 26 6 45 45 H 1.09001 * 109.25980 * 221.89462 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0463 1.4402 0.0000 4 6 2.0468 -0.7343 -1.2432 5 6 3.5578 -0.5287 -1.3312 6 6 4.2163 -0.8712 -0.0211 7 7 5.5401 -1.0956 -0.0230 8 6 6.1940 -1.3804 1.0679 9 7 5.5689 -1.4644 2.2588 10 6 6.3305 -1.7803 3.4697 11 6 6.8277 -0.4839 4.1124 12 1 5.9821 0.1802 4.2916 13 6 7.7863 0.1747 3.2101 14 7 8.5270 0.6825 2.5133 15 6 7.5151 -0.8043 5.4412 16 6 7.8955 0.4797 6.1323 17 1 7.6700 1.4293 5.6698 18 6 8.5326 0.4422 7.3545 19 7 8.8130 -0.7142 7.9146 20 14 9.0048 2.0338 8.2109 21 1 8.5879 3.1883 7.3750 22 1 8.3262 2.1064 9.5299 23 1 10.4761 2.0719 8.4083 24 6 4.2378 -1.2616 2.3289 25 8 3.6542 -1.3395 3.3972 26 6 3.5298 -0.9511 1.1436 27 6 2.0450 -0.7316 1.2386 28 1 -0.3633 0.5049 0.8950 29 1 -0.3633 0.5226 -0.8848 30 1 -0.3633 -1.0277 -0.0102 31 1 3.1363 1.4355 -0.0102 32 1 1.6770 1.9586 -0.8848 33 1 1.6936 1.9526 0.8950 34 1 1.8255 -1.7984 -1.1595 35 1 1.5680 -0.3288 -2.1345 36 1 3.7651 0.5130 -1.5762 37 1 3.9625 -1.1690 -2.1151 38 1 7.2591 -1.5526 1.0164 39 1 7.1835 -2.4071 3.2093 40 1 5.6901 -2.3123 4.1733 41 1 8.4116 -1.3951 5.2531 42 1 6.8332 -1.3703 6.0757 43 1 8.5681 -1.5407 7.4698 44 1 1.5436 -1.6960 1.3208 45 1 1.8255 -0.1358 2.1245 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563147242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:37 Heat of formation + Delta-G solvation = -0.366618 kcal Electronic energy + Delta-G solvation = -26495.541952 eV Core-core repulsion = 22898.210564 eV Total energy + Delta-G solvation = -3597.331388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.12355 -39.28126 -37.61552 -37.08151 -35.05633 -33.99931 -32.23671 -31.47798 -31.22123 -27.56246 -27.27755 -27.18534 -24.79561 -23.82594 -23.05572 -22.28672 -22.02072 -19.05377 -18.32108 -17.76177 -16.92989 -16.69510 -16.31965 -15.88093 -15.27619 -14.76286 -14.60845 -14.27322 -14.18815 -13.93296 -13.84559 -13.66729 -13.20508 -13.07133 -12.86948 -12.73891 -12.41454 -12.33081 -12.07383 -12.00446 -11.94761 -11.87227 -11.60173 -11.42237 -11.00013 -10.93548 -10.84311 -10.70628 -10.58667 -10.35142 -10.19234 -10.02159 -9.98385 -9.84318 -8.78623 -8.48142 -8.31118 -6.51440 -4.23795 0.58827 1.82820 2.42131 3.17871 3.29517 3.39743 3.42274 3.53671 3.56320 3.83876 4.19263 4.34788 4.43198 4.45910 4.50284 4.55219 4.63378 4.90296 5.00061 5.06695 5.09338 5.11492 5.27034 5.29906 5.34382 5.46075 5.48469 5.50410 5.60401 5.64437 5.69858 5.72317 5.75308 5.87850 5.91085 5.96255 6.05516 6.10528 6.16210 6.24841 6.33063 6.55614 6.94098 7.06300 7.73199 7.84241 7.90510 8.03604 8.28585 8.70541 9.47009 10.89525 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.003221 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.883560 B = 8692.081611 C = 9055.161502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.144 4.144 4 C -0.108 4.108 5 C -0.071 4.071 6 C 0.173 3.827 7 N -0.544 5.544 8 C 0.375 3.625 9 N -0.522 5.522 10 C 0.095 3.905 11 C 0.002 3.998 12 H 0.111 0.889 13 C 0.229 3.771 14 N -0.452 5.452 15 C 0.022 3.978 16 C -0.608 4.608 17 H 0.051 0.949 18 C 0.023 3.977 19 N -0.906 5.906 20 Si 1.071 2.929 21 H -0.289 1.289 22 H -0.284 1.284 23 H -0.286 1.286 24 C 0.519 3.481 25 O -0.526 6.526 26 C -0.242 4.242 27 C -0.041 4.041 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.196 0.804 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.021 0.979 42 H 0.035 0.965 43 H 0.270 0.730 44 H 0.074 0.926 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.142 -3.135 -18.360 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.201 4.201 4 C -0.146 4.146 5 C -0.109 4.109 6 C 0.056 3.944 7 N -0.265 5.265 8 C 0.090 3.910 9 N -0.239 5.239 10 C -0.028 4.028 11 C -0.021 4.021 12 H 0.128 0.872 13 C -0.088 4.088 14 N -0.129 5.129 15 C -0.017 4.017 16 C -0.646 4.646 17 H 0.070 0.930 18 C -0.182 4.182 19 N -0.542 5.542 20 Si 0.900 3.100 21 H -0.215 1.215 22 H -0.210 1.210 23 H -0.212 1.212 24 C 0.317 3.683 25 O -0.403 6.403 26 C -0.248 4.248 27 C -0.079 4.079 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.213 0.787 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.039 0.961 42 H 0.053 0.947 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.441 -1.724 -18.132 22.057 hybrid contribution -1.081 -0.780 -0.242 1.355 sum -13.521 -2.504 -18.374 22.950 Atomic orbital electron populations 1.21819 0.93906 1.01894 1.01979 1.20591 0.95614 0.95623 0.94842 1.21938 1.01411 0.94968 1.01798 1.21661 0.94057 1.00907 0.97941 1.20413 0.94695 1.03041 0.92729 1.20792 0.88540 0.90060 0.95054 1.68281 1.09440 1.22401 1.26426 1.24797 0.99356 0.87283 0.79603 1.46894 1.10501 1.56173 1.10370 1.22353 0.96778 0.98107 0.85560 1.19437 0.94858 0.93893 0.93895 0.87161 1.29124 0.93782 0.93446 0.92434 1.81120 1.10401 1.08918 1.12438 1.19281 0.95412 0.98951 0.88025 1.21955 1.43447 0.92056 1.07182 0.93025 1.25796 0.93775 1.03641 0.94980 1.70754 1.44351 0.98129 1.40942 0.83496 0.76760 0.73997 0.75788 1.21490 1.21044 1.21223 1.17285 0.80645 0.79450 0.90911 1.90959 1.66797 1.52278 1.30253 1.21045 0.98869 1.12886 0.92043 1.20072 0.88906 1.00721 0.98183 0.92351 0.92458 0.92516 0.92428 0.92539 0.92465 0.91345 0.90737 0.89095 0.89415 0.78723 0.87989 0.85982 0.96084 0.94681 0.91937 0.90788 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.49 37.16 0.32 -0.69 16 2 C -0.07 -0.58 0.79 -154.43 -0.12 -0.70 16 3 C -0.14 -1.32 7.78 37.16 0.29 -1.03 16 4 C -0.11 -0.83 4.95 -26.68 -0.13 -0.96 16 5 C -0.07 -0.65 5.32 -28.07 -0.15 -0.80 16 6 C 0.17 2.12 5.92 -82.59 -0.49 1.63 16 7 N -0.54 -7.05 10.25 -10.81 -0.11 -7.17 16 8 C 0.37 4.71 10.41 -90.77 -0.94 3.76 16 9 N -0.52 -7.23 2.48 -121.07 -0.30 -7.53 16 10 C 0.09 1.31 4.88 -4.04 -0.02 1.29 16 11 C 0.00 0.03 2.42 -93.41 -0.23 -0.20 16 12 H 0.11 2.10 8.14 -51.93 -0.42 1.68 16 13 C 0.23 4.37 12.65 -20.74 -0.26 4.11 16 14 N -0.45 -9.17 18.54 42.18 0.78 -8.39 16 15 C 0.02 0.48 3.74 -27.88 -0.10 0.38 16 16 C -0.61 -16.09 8.60 -34.44 -0.30 -16.39 16 17 H 0.05 1.40 7.59 -52.49 -0.40 1.00 16 18 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 19 N -0.91 -26.13 13.65 55.43 0.76 -25.37 16 20 Si 1.07 24.90 29.90 -169.99 -5.08 19.82 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.52 8.09 7.42 -14.99 -0.11 7.98 16 25 O -0.53 -9.67 15.95 4.94 0.08 -9.59 16 26 C -0.24 -3.23 5.32 -104.53 -0.56 -3.79 16 27 C -0.04 -0.47 4.11 -28.14 -0.12 -0.58 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.06 0.61 5.59 -51.93 -0.29 0.32 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 35 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 36 H 0.09 0.80 6.81 -51.93 -0.35 0.44 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.20 2.03 7.95 -52.48 -0.42 1.61 16 39 H 0.10 1.11 8.02 -51.92 -0.42 0.70 16 40 H 0.12 1.70 7.45 -51.93 -0.39 1.31 16 41 H 0.02 0.47 8.00 -51.93 -0.42 0.06 16 42 H 0.04 0.78 8.01 -51.93 -0.42 0.37 16 43 H 0.27 7.57 7.22 -40.82 -0.29 7.27 16 44 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 45 H 0.08 1.04 7.84 -51.93 -0.41 0.63 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -32.02 366.18 -8.20 -40.21 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.82 Total: -2.04 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -3.02 Total: -5.46 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 1.13 Total: -48.46 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.02 -8.20 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563147242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.846 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds