Wall clock time and date at job start Tue Mar 31 2020 10:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.72291 * 2 1 4 4 C 1.53357 * 109.69484 * 239.43032 * 2 1 3 5 5 C 1.52743 * 108.39977 * 171.19828 * 4 2 1 6 6 C 1.50579 * 110.60176 * 50.90447 * 5 4 2 7 7 N 1.34265 * 117.89896 * 162.33360 * 6 5 4 8 8 C 1.30341 * 122.00131 * 179.07671 * 7 6 5 9 9 N 1.34757 * 121.37125 * 0.02562 * 8 7 6 10 10 C 1.46497 * 120.18557 * 180.27065 * 9 8 7 11 11 C 1.52999 * 109.47271 * 90.00217 * 10 9 8 12 12 H 1.09001 * 109.46617 * 55.00145 * 11 10 9 13 13 C 1.47200 * 109.46851 * 295.00203 * 11 10 9 14 14 N 7.46597 * 159.58467 * 74.80725 * 2 1 3 15 15 C 1.53002 * 109.47329 * 174.99952 * 11 10 9 16 16 C 1.50696 * 109.46919 * 185.00033 * 15 11 10 17 17 H 1.07999 * 120.00202 * 359.97438 * 16 15 11 18 18 C 1.37884 * 119.99746 * 180.02562 * 16 15 11 19 19 N 1.31514 * 119.99573 * 0.27650 * 18 16 15 20 20 Si 1.86800 * 119.99781 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47364 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.46883 * 120.00040 * 20 18 16 23 23 H 1.48497 * 109.46870 * 239.99850 * 20 18 16 24 24 C 1.34833 * 119.63492 * 0.55284 * 9 8 7 25 25 O 1.21979 * 120.54433 * 179.67100 * 24 9 8 26 26 C 1.35431 * 122.67924 * 341.91770 * 6 5 4 27 27 C 1.50393 * 123.10608 * 1.15911 * 26 6 5 28 28 H 1.08994 * 109.47017 * 299.42857 * 1 2 3 29 29 H 1.08996 * 109.47292 * 59.43220 * 1 2 3 30 30 H 1.09007 * 109.47019 * 179.43197 * 1 2 3 31 31 H 1.09004 * 109.47127 * 180.57140 * 3 2 1 32 32 H 1.08996 * 109.47051 * 300.56934 * 3 2 1 33 33 H 1.08996 * 109.47055 * 60.56696 * 3 2 1 34 34 H 1.09003 * 109.67748 * 290.92009 * 4 2 1 35 35 H 1.08998 * 109.67474 * 51.43077 * 4 2 1 36 36 H 1.09006 * 109.25110 * 290.61264 * 5 4 2 37 37 H 1.09005 * 109.24899 * 171.19713 * 5 4 2 38 38 H 1.08011 * 119.31606 * 180.02562 * 8 7 6 39 39 H 1.09008 * 109.46938 * 330.00318 * 10 9 8 40 40 H 1.09005 * 109.47398 * 210.00600 * 10 9 8 41 41 H 1.09000 * 109.46497 * 65.00298 * 15 11 10 42 42 H 1.08999 * 109.46623 * 305.00362 * 15 11 10 43 43 H 0.97001 * 120.00651 * 359.71956 * 19 18 16 44 44 H 1.09002 * 109.25380 * 102.42448 * 27 26 6 45 45 H 1.09001 * 109.25980 * 221.89462 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0463 1.4402 0.0000 4 6 2.0468 -0.7343 -1.2432 5 6 3.5578 -0.5287 -1.3312 6 6 4.2163 -0.8712 -0.0211 7 7 5.5401 -1.0956 -0.0230 8 6 6.1940 -1.3804 1.0679 9 7 5.5689 -1.4644 2.2588 10 6 6.3305 -1.7803 3.4697 11 6 6.8277 -0.4839 4.1124 12 1 5.9821 0.1802 4.2916 13 6 7.7863 0.1747 3.2101 14 7 8.5270 0.6825 2.5133 15 6 7.5151 -0.8043 5.4412 16 6 7.8955 0.4797 6.1323 17 1 7.6700 1.4293 5.6698 18 6 8.5326 0.4422 7.3545 19 7 8.8130 -0.7142 7.9146 20 14 9.0048 2.0338 8.2109 21 1 8.5879 3.1883 7.3750 22 1 8.3262 2.1064 9.5299 23 1 10.4761 2.0719 8.4083 24 6 4.2378 -1.2616 2.3289 25 8 3.6542 -1.3395 3.3972 26 6 3.5298 -0.9511 1.1436 27 6 2.0450 -0.7316 1.2386 28 1 -0.3633 0.5049 0.8950 29 1 -0.3633 0.5226 -0.8848 30 1 -0.3633 -1.0277 -0.0102 31 1 3.1363 1.4355 -0.0102 32 1 1.6770 1.9586 -0.8848 33 1 1.6936 1.9526 0.8950 34 1 1.8255 -1.7984 -1.1595 35 1 1.5680 -0.3288 -2.1345 36 1 3.7651 0.5130 -1.5762 37 1 3.9625 -1.1690 -2.1151 38 1 7.2591 -1.5526 1.0164 39 1 7.1835 -2.4071 3.2093 40 1 5.6901 -2.3123 4.1733 41 1 8.4116 -1.3951 5.2531 42 1 6.8332 -1.3703 6.0757 43 1 8.5681 -1.5407 7.4698 44 1 1.5436 -1.6960 1.3208 45 1 1.8255 -0.1358 2.1245 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563147242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:36 Heat of formation + Delta-G solvation = -16.631450 kcal Electronic energy + Delta-G solvation = -26496.247248 eV Core-core repulsion = 22898.210564 eV Total energy + Delta-G solvation = -3598.036684 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.19748 -40.17301 -38.80781 -38.48510 -36.38081 -35.71337 -33.67029 -32.52087 -32.23017 -28.81383 -28.28559 -28.00489 -26.22474 -24.85060 -24.31420 -23.93337 -22.96072 -19.99350 -19.43462 -19.20269 -18.44213 -18.04390 -17.48768 -17.03551 -16.10859 -15.85034 -15.70917 -15.66036 -15.38984 -15.22028 -15.05327 -14.90301 -14.28484 -14.24401 -14.14283 -13.97937 -13.72246 -13.55340 -13.41197 -13.15594 -13.00404 -12.75283 -12.70330 -12.64207 -12.41389 -12.28797 -12.07738 -11.98149 -11.73403 -11.58514 -11.43454 -11.14434 -11.10921 -10.90345 -10.69723 -10.56766 -9.40542 -8.68334 -6.40143 -0.43209 0.71356 1.30093 1.50689 1.57199 1.64323 1.70939 1.74150 2.43892 2.51838 2.84841 2.92897 3.15637 3.28365 3.50161 3.64037 3.71792 3.79947 3.85248 3.93202 4.07436 4.23040 4.33231 4.41674 4.43988 4.50188 4.53759 4.61324 4.71604 4.78042 4.86464 4.90123 5.00923 5.04620 5.07492 5.09459 5.18663 5.21409 5.24011 5.27266 5.37732 5.44880 5.50617 5.53372 5.87095 6.14717 6.47749 6.57854 6.66498 6.71676 7.36039 8.74481 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.003221 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.883560 B = 8692.081611 C = 9055.161502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C -0.142 4.142 4 C -0.102 4.102 5 C -0.071 4.071 6 C 0.179 3.821 7 N -0.549 5.549 8 C 0.372 3.628 9 N -0.520 5.520 10 C 0.103 3.897 11 C 0.015 3.985 12 H 0.096 0.904 13 C 0.239 3.761 14 N -0.468 5.468 15 C 0.026 3.974 16 C -0.619 4.619 17 H 0.040 0.960 18 C -0.025 4.025 19 N -0.932 5.932 20 Si 1.108 2.892 21 H -0.281 1.281 22 H -0.275 1.275 23 H -0.280 1.280 24 C 0.506 3.494 25 O -0.566 6.566 26 C -0.259 4.259 27 C -0.039 4.039 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.219 0.781 39 H 0.139 0.861 40 H 0.121 0.879 41 H 0.020 0.980 42 H 0.031 0.969 43 H 0.265 0.735 44 H 0.073 0.927 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.609 -3.033 -20.665 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.063 4.063 3 C -0.199 4.199 4 C -0.139 4.139 5 C -0.108 4.108 6 C 0.061 3.939 7 N -0.270 5.270 8 C 0.088 3.912 9 N -0.236 5.236 10 C -0.020 4.020 11 C -0.008 4.008 12 H 0.114 0.886 13 C -0.078 4.078 14 N -0.145 5.145 15 C -0.013 4.013 16 C -0.657 4.657 17 H 0.058 0.942 18 C -0.225 4.225 19 N -0.568 5.568 20 Si 0.931 3.069 21 H -0.206 1.206 22 H -0.200 1.200 23 H -0.206 1.206 24 C 0.306 3.694 25 O -0.447 6.447 26 C -0.265 4.265 27 C -0.077 4.077 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.236 0.764 39 H 0.156 0.844 40 H 0.139 0.861 41 H 0.038 0.962 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.902 -1.628 -20.473 24.254 hybrid contribution -0.922 -0.794 0.424 1.288 sum -13.824 -2.422 -20.049 24.473 Atomic orbital electron populations 1.21799 0.92531 1.02477 1.02488 1.20590 0.96642 0.95016 0.94042 1.21925 1.00273 0.95477 1.02271 1.21669 0.92988 1.01096 0.98174 1.20563 0.95537 1.03626 0.91101 1.21300 0.88284 0.88303 0.96056 1.68367 1.09866 1.22284 1.26458 1.25315 1.00260 0.86641 0.78985 1.46837 1.10070 1.55994 1.10740 1.22275 0.97967 0.96002 0.85738 1.19202 0.93621 0.95618 0.92351 0.88590 1.29232 0.93478 0.92983 0.92141 1.81126 1.10782 1.09416 1.13188 1.19118 0.95496 0.97005 0.89696 1.22328 1.42693 0.93301 1.07364 0.94187 1.26979 0.93851 1.05486 0.96142 1.70847 1.46013 0.98460 1.41528 0.83014 0.76908 0.71392 0.75559 1.20594 1.20022 1.20599 1.17735 0.81206 0.79227 0.91183 1.90926 1.67685 1.54455 1.31646 1.21190 0.99756 1.13915 0.91664 1.20089 0.88082 1.00683 0.98824 0.93124 0.90656 0.91953 0.94114 0.90390 0.93646 0.91060 0.88049 0.88352 0.88027 0.76438 0.84351 0.86070 0.96195 0.95033 0.92535 0.90833 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.49 71.98 0.61 -1.09 16 2 C -0.06 -1.00 0.79 -52.13 -0.04 -1.04 16 3 C -0.14 -2.43 7.78 71.98 0.56 -1.87 16 4 C -0.10 -1.26 4.95 30.63 0.15 -1.11 16 5 C -0.07 -1.11 5.32 29.72 0.16 -0.95 16 6 C 0.18 4.13 5.92 41.50 0.25 4.37 16 7 N -0.55 -13.29 10.25 -188.12 -1.93 -15.22 16 8 C 0.37 8.77 10.41 180.40 1.88 10.64 16 9 N -0.52 -14.08 2.48 -655.03 -1.63 -15.71 16 10 C 0.10 2.76 4.88 86.38 0.42 3.18 16 11 C 0.01 0.52 2.42 -12.60 -0.03 0.49 16 12 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 13 C 0.24 8.91 12.65 89.43 1.13 10.04 16 14 N -0.47 -18.50 18.54 20.01 0.37 -18.13 16 15 C 0.03 1.13 3.74 29.85 0.11 1.25 16 16 C -0.62 -32.97 8.60 25.60 0.22 -32.75 16 17 H 0.04 2.18 7.59 -2.91 -0.02 2.16 16 18 C -0.02 -1.38 5.46 84.66 0.46 -0.91 16 19 N -0.93 -54.04 13.65 21.45 0.29 -53.75 16 20 Si 1.11 49.97 29.90 68.60 2.05 52.02 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 C 0.51 16.01 7.42 85.04 0.63 16.64 16 25 O -0.57 -21.67 15.95 -5.25 -0.08 -21.76 16 26 C -0.26 -6.88 5.32 -19.80 -0.11 -6.99 16 27 C -0.04 -0.89 4.11 29.68 0.12 -0.77 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.04 0.82 5.59 -2.38 -0.01 0.81 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.88 8.11 -2.39 -0.02 0.86 16 35 H 0.10 0.78 8.13 -2.39 -0.02 0.76 16 36 H 0.10 1.45 6.81 -2.38 -0.02 1.44 16 37 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.22 4.00 7.95 -2.90 -0.02 3.97 16 39 H 0.14 2.70 8.02 -2.38 -0.02 2.68 16 40 H 0.12 3.35 7.45 -2.38 -0.02 3.33 16 41 H 0.02 0.89 8.00 -2.39 -0.02 0.87 16 42 H 0.03 1.43 8.01 -2.39 -0.02 1.41 16 43 H 0.26 15.03 7.22 -92.71 -0.67 14.36 16 44 H 0.07 1.65 8.11 -2.39 -0.02 1.63 16 45 H 0.06 1.54 7.84 -2.39 -0.02 1.52 16 Total: -1.00 -69.57 366.18 6.69 -62.87 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.09 Total: 10.52 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 6.53 Total: -0.86 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -2.89 Total: -102.80 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.08 Total: -21.76 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.05 Total: 52.02 kcal Total: -69.57 6.69 -62.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563147242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.242 kcal (2) G-P(sol) polarization free energy of solvation -69.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds