Wall clock time and date at job start Tue Mar 31 2020 10:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34952 * 119.69827 * 2 1 4 4 C 1.40461 * 120.30309 * 180.02562 * 3 2 1 5 5 C 1.36023 * 119.69485 * 0.02562 * 4 3 2 6 6 C 1.40935 * 119.32740 * 359.97438 * 5 4 3 7 7 N 1.32557 * 132.32566 * 179.97438 * 6 5 4 8 8 C 1.33517 * 109.15569 * 180.02562 * 7 6 5 9 9 C 1.50699 * 125.68202 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47037 * 275.01895 * 9 8 7 11 11 C 1.34782 * 119.99980 * 180.02562 * 10 9 8 12 12 O 1.21276 * 120.00085 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99898 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47250 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47380 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47405 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47275 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00026 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99702 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00287 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99661 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47208 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47234 * 120.00482 * 21 19 17 24 24 H 1.48507 * 109.47204 * 240.00217 * 21 19 17 25 25 C 1.35098 * 108.62771 * 359.97438 * 8 7 6 26 26 N 1.36487 * 119.69267 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47318 * 269.97400 * 1 2 3 28 28 H 1.08997 * 109.47114 * 29.98185 * 1 2 3 29 29 H 1.09003 * 109.47141 * 149.97452 * 1 2 3 30 30 H 1.08005 * 119.84511 * 0.04571 * 3 2 1 31 31 H 1.08001 * 120.15323 * 180.02562 * 4 3 2 32 32 H 1.08009 * 120.33625 * 180.27926 * 5 4 3 33 33 H 1.08995 * 109.47400 * 35.02433 * 9 8 7 34 34 H 1.09008 * 109.46934 * 155.02528 * 9 8 7 35 35 H 0.96995 * 120.00168 * 0.02562 * 10 9 8 36 36 H 1.09004 * 109.47108 * 300.00170 * 13 11 10 37 37 H 1.08995 * 109.47144 * 60.00056 * 13 11 10 38 38 H 1.09004 * 109.46907 * 299.99930 * 14 13 11 39 39 H 1.08995 * 109.47298 * 59.99786 * 14 13 11 40 40 H 1.08995 * 109.47376 * 299.99896 * 15 14 13 41 41 H 1.09008 * 109.46781 * 59.99883 * 15 14 13 42 42 H 1.09004 * 109.47174 * 300.00167 * 16 15 14 43 43 H 1.08999 * 109.46931 * 59.99506 * 16 15 14 44 44 H 0.97002 * 120.00008 * 179.97438 * 20 19 17 45 45 H 1.07994 * 126.41124 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1756 1.1723 0.0000 4 6 3.5801 1.1871 -0.0005 5 6 4.2664 0.0127 -0.0016 6 6 3.5538 -1.2033 -0.0016 7 7 3.9480 -2.4688 -0.0029 8 6 2.8741 -3.2622 -0.0027 9 6 2.8945 -4.7691 -0.0045 10 7 3.0205 -5.2541 -1.3811 11 6 3.0592 -6.5785 -1.6281 12 8 2.9893 -7.3687 -0.7108 13 6 3.1895 -7.0775 -3.0441 14 6 3.2088 -8.6073 -3.0461 15 6 3.3404 -9.1139 -4.4838 16 6 3.3603 -10.6438 -4.4858 17 6 3.4905 -11.1427 -5.9018 18 1 3.5533 -10.4390 -6.7186 19 6 3.5307 -12.4975 -6.1543 20 7 3.4548 -13.3544 -5.1597 21 14 3.6928 -13.1159 -7.9095 22 1 3.7596 -11.9588 -8.8379 23 1 4.9319 -13.9243 -8.0370 24 1 2.5164 -13.9563 -8.2490 25 6 1.7663 -2.4890 -0.0007 26 7 2.1831 -1.1857 -0.0005 27 1 -0.3634 -0.0005 1.0276 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6281 2.1033 0.0007 31 1 4.1127 2.1266 -0.0001 32 1 5.3465 0.0120 0.0025 33 1 3.7414 -5.1217 0.5840 34 1 1.9683 -5.1455 0.4299 35 1 3.0761 -4.6221 -2.1148 36 1 2.3429 -6.7243 -3.6331 37 1 4.1160 -6.7015 -3.4780 38 1 4.0551 -8.9607 -2.4571 39 1 2.2821 -8.9829 -2.6124 40 1 2.4939 -8.7605 -5.0725 41 1 4.2670 -8.7382 -4.9180 42 1 4.2071 -10.9969 -3.8972 43 1 2.4340 -11.0197 -4.0513 44 1 3.4826 -14.3075 -5.3374 45 1 0.7432 -2.8348 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588358654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:39 Heat of formation + Delta-G solvation = 1.175702 kcal Electronic energy + Delta-G solvation = -24088.389342 eV Core-core repulsion = 20491.124834 eV Total energy + Delta-G solvation = -3597.264508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.91629 -40.76179 -38.77992 -36.69913 -35.82578 -35.10565 -34.60014 -32.49738 -31.59316 -30.63615 -28.40168 -28.02489 -26.80737 -24.11975 -23.78833 -22.90322 -21.79233 -21.63692 -21.21004 -18.87236 -18.41796 -18.04838 -17.52497 -17.28981 -16.91667 -16.76010 -16.50671 -16.30864 -15.68754 -15.22361 -14.94556 -14.81716 -14.55049 -14.29594 -14.21551 -13.89066 -13.56998 -13.53829 -13.48875 -13.24357 -13.12461 -12.83073 -12.44968 -12.38242 -12.30455 -12.13774 -12.12512 -11.98763 -11.36562 -11.35378 -11.20926 -11.15135 -10.83969 -10.54888 -10.15717 -9.78766 -8.80188 -8.17937 -6.30064 -0.23521 0.26545 1.40565 1.41786 1.48890 1.55262 1.55835 1.64961 2.37597 2.42960 2.57955 3.09266 3.14633 3.31534 3.67063 3.80199 3.87316 4.06242 4.12110 4.14432 4.17375 4.20740 4.43433 4.55275 4.58916 4.64610 4.69445 4.71319 4.80174 4.82864 4.85419 4.90122 5.05814 5.13138 5.21074 5.25781 5.32072 5.34470 5.41788 5.47063 5.58499 5.60631 5.79524 5.89198 6.07639 6.26445 6.51094 6.79116 6.88470 7.23546 7.39407 8.94477 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029962 B = 0.001665 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.299666 B =16815.863528 C =16958.131230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.072 3.928 3 C -0.144 4.144 4 C -0.076 4.076 5 C -0.118 4.118 6 C 0.209 3.791 7 N -0.525 5.525 8 C 0.024 3.976 9 C 0.208 3.792 10 N -0.713 5.713 11 C 0.515 3.485 12 O -0.585 6.585 13 C -0.127 4.127 14 C -0.096 4.096 15 C -0.096 4.096 16 C 0.017 3.983 17 C -0.541 4.541 18 H 0.066 0.934 19 C -0.008 4.008 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.258 1.258 23 H -0.279 1.279 24 H -0.278 1.278 25 C -0.072 4.072 26 N -0.364 5.364 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.188 0.812 31 H 0.177 0.823 32 H 0.156 0.844 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.412 0.588 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.042 0.958 39 H 0.046 0.954 40 H 0.062 0.938 41 H 0.059 0.941 42 H -0.016 1.016 43 H -0.014 1.014 44 H 0.263 0.737 45 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.803 39.864 10.987 41.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.031 4.031 3 C -0.164 4.164 4 C -0.100 4.100 5 C -0.139 4.139 6 C -0.035 4.035 7 N -0.246 5.246 8 C -0.108 4.108 9 C 0.083 3.917 10 N -0.366 5.366 11 C 0.303 3.697 12 O -0.465 6.465 13 C -0.166 4.166 14 C -0.134 4.134 15 C -0.134 4.134 16 C -0.020 4.020 17 C -0.579 4.579 18 H 0.084 0.916 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.795 3.205 22 H -0.182 1.182 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.205 4.205 26 N -0.036 5.036 27 H 0.112 0.888 28 H 0.133 0.867 29 H 0.092 0.908 30 H 0.205 0.795 31 H 0.195 0.805 32 H 0.173 0.827 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.249 0.751 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.003 0.997 43 H 0.005 0.995 44 H 0.071 0.929 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.110 38.823 11.693 41.004 hybrid contribution -0.352 -0.701 -0.635 1.009 sum -6.462 38.123 11.057 40.217 Atomic orbital electron populations 1.21054 0.85611 1.05772 1.04844 1.21058 0.96907 0.83265 1.01874 1.21211 0.94842 0.97524 1.02820 1.21534 0.94217 0.98737 0.95466 1.20558 1.01424 0.87749 1.04126 1.21420 0.81220 0.94793 1.06045 1.70596 1.30645 0.99225 1.24162 1.20662 0.88966 0.95471 1.05698 1.19338 1.02793 0.85483 0.84061 1.45911 1.74840 1.06683 1.09182 1.21174 0.74533 0.81820 0.92170 1.90696 1.51316 1.56327 1.48111 1.21662 1.06454 0.96123 0.92407 1.21248 1.01165 0.94130 0.96841 1.21453 1.01223 0.95566 0.95114 1.19072 0.94420 0.92962 0.95514 1.21788 1.49715 0.92313 0.94125 0.91611 1.26098 0.94872 0.97436 1.02053 1.70139 1.51802 1.02329 1.33497 0.85320 0.77700 0.78474 0.79048 1.18155 1.20502 1.20378 1.22724 1.01675 0.80569 1.15499 1.42993 1.08507 1.06411 1.45690 0.88802 0.86747 0.90779 0.79529 0.80527 0.82667 0.92004 0.89023 0.75148 0.86153 0.86805 0.93929 0.93482 0.91949 0.92277 0.99725 0.99510 0.92867 0.77364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.27 9.85 71.24 0.70 0.43 16 2 C 0.07 0.64 6.78 41.08 0.28 0.92 16 3 C -0.14 -0.72 9.59 22.06 0.21 -0.51 16 4 C -0.08 -0.50 10.07 22.30 0.22 -0.27 16 5 C -0.12 -1.62 10.11 22.42 0.23 -1.40 16 6 C 0.21 4.26 7.81 134.11 1.05 5.31 16 7 N -0.53 -13.37 11.32 -182.41 -2.06 -15.44 16 8 C 0.02 0.52 6.43 41.58 0.27 0.78 16 9 C 0.21 4.79 6.20 85.63 0.53 5.32 16 10 N -0.71 -16.27 5.55 -466.79 -2.59 -18.86 16 11 C 0.51 15.20 7.83 87.66 0.69 15.88 16 12 O -0.58 -22.88 15.98 -3.02 -0.05 -22.92 16 13 C -0.13 -3.40 5.70 29.85 0.17 -3.23 16 14 C -0.10 -3.61 4.50 30.59 0.14 -3.47 16 15 C -0.10 -4.06 5.15 30.59 0.16 -3.91 16 16 C 0.02 0.98 4.97 29.85 0.15 1.13 16 17 C -0.54 -32.04 9.11 25.60 0.23 -31.81 16 18 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 19 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 20 N -0.94 -59.80 13.29 21.45 0.28 -59.51 16 21 Si 0.97 45.55 29.54 68.60 2.03 47.57 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 25 C -0.07 -1.18 10.98 83.19 0.91 -0.26 16 26 N -0.36 -5.80 2.95 -338.86 -1.00 -6.80 16 27 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.11 -0.25 8.07 -2.39 -0.02 -0.27 16 29 H 0.07 0.24 7.49 -2.39 -0.02 0.22 16 30 H 0.19 -0.49 8.06 -2.91 -0.02 -0.52 16 31 H 0.18 -0.09 8.06 -2.91 -0.02 -0.12 16 32 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.41 7.51 8.46 -92.71 -0.78 6.73 16 36 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 39 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 40 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 42 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 43 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 44 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.21 2.04 7.80 -2.91 -0.02 2.01 16 Total: -1.00 -85.32 382.00 3.21 -82.11 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.20 Total: 8.91 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 6.40 Total: -15.06 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -5.37 Total: -100.61 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -85.32 3.21 -82.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588358654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.289 kcal (2) G-P(sol) polarization free energy of solvation -85.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds