Wall clock time and date at job start Tue Mar 31 2020 10:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38127 * 120.04013 * 2 1 4 4 C 1.38259 * 120.07752 * 179.97438 * 3 2 1 5 5 C 1.38306 * 120.14966 * 359.97438 * 4 3 2 6 6 C 1.38085 * 120.07542 * 0.02562 * 5 4 3 7 7 C 1.38894 * 120.03876 * 179.97438 * 2 1 3 8 8 N 1.39670 * 120.07267 * 0.04219 * 7 2 1 9 9 C 1.46903 * 111.00008 * 116.02513 * 8 7 2 10 10 C 1.46900 * 111.00106 * 239.97922 * 8 7 2 11 11 C 1.50702 * 109.47067 * 170.00015 * 10 8 7 12 12 O 1.21279 * 120.00184 * 0.02562 * 11 10 8 13 13 N 1.34779 * 119.99919 * 179.97438 * 11 10 8 14 14 C 1.46502 * 119.99587 * 179.97438 * 13 11 10 15 15 C 1.50693 * 109.47052 * 90.00734 * 14 13 11 16 16 H 1.08005 * 120.00465 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00473 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99195 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00536 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47134 * 59.99462 * 19 17 15 21 21 H 1.48493 * 109.47555 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47022 * 299.99818 * 19 17 15 23 23 C 1.46498 * 119.99992 * 0.02562 * 13 11 10 24 24 C 1.53007 * 109.47096 * 89.99874 * 23 13 11 25 25 C 1.47200 * 109.46985 * 179.97438 * 24 23 13 26 26 N 7.59228 * 104.11545 * 121.77908 * 2 1 3 27 27 H 1.09002 * 109.47718 * 270.02603 * 1 2 3 28 28 H 1.09001 * 109.47460 * 30.02673 * 1 2 3 29 29 H 1.08998 * 109.47084 * 150.02261 * 1 2 3 30 30 H 1.07998 * 119.96050 * 359.96813 * 3 2 1 31 31 H 1.08006 * 119.92718 * 180.02562 * 4 3 2 32 32 H 1.08001 * 119.96393 * 180.28488 * 5 4 3 33 33 H 1.07996 * 120.03483 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.46823 * 59.99805 * 9 8 7 35 35 H 1.08998 * 109.47431 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47132 * 300.00573 * 9 8 7 37 37 H 1.08997 * 109.47239 * 289.99856 * 10 8 7 38 38 H 1.09000 * 109.46838 * 50.00409 * 10 8 7 39 39 H 1.09002 * 109.47078 * 210.00174 * 14 13 11 40 40 H 1.08994 * 109.47612 * 330.00008 * 14 13 11 41 41 H 0.97005 * 119.99504 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.46854 * 209.99475 * 23 13 11 43 43 H 1.09000 * 109.47131 * 329.99701 * 23 13 11 44 44 H 1.08998 * 109.46883 * 299.99970 * 24 23 13 45 45 H 1.09000 * 109.47272 * 59.99913 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5810 1.1966 0.0005 5 6 4.2764 0.0011 0.0016 6 6 3.5915 -1.1979 0.0016 7 6 2.2022 -1.2024 0.0005 8 7 1.5062 -2.4133 0.0002 9 6 1.7664 -3.1697 -1.2320 10 6 1.8380 -3.2116 1.1879 11 6 0.8979 -4.3857 1.2827 12 8 0.0367 -4.5423 0.4432 13 7 1.0149 -5.2622 2.2998 14 6 0.1007 -6.4032 2.3922 15 6 0.6843 -7.5760 1.6473 16 1 1.6404 -7.4810 1.1540 17 6 -0.0023 -8.7706 1.5954 18 7 -1.1662 -8.8866 2.1966 19 14 0.7207 -10.2242 0.6715 20 1 2.0305 -10.5887 1.2691 21 1 -0.2052 -11.3812 0.7662 22 1 0.9122 -9.8584 -0.7549 23 6 2.0556 -5.0733 3.3135 24 6 1.5062 -4.2147 4.4545 25 6 2.5516 -4.0254 5.4734 26 7 3.3585 -3.8777 6.2592 27 1 -0.3634 0.0005 1.0276 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6584 2.1310 -0.0005 31 1 4.1192 2.1330 0.0010 32 1 5.3564 0.0053 0.0067 33 1 4.1352 -2.1310 0.0029 34 1 2.8331 -3.3796 -1.3110 35 1 1.2127 -4.1082 -1.2060 36 1 1.4469 -2.5826 -2.0930 37 1 2.8633 -3.5726 1.1082 38 1 1.7386 -2.5936 2.0803 39 1 -0.0406 -6.6717 3.4391 40 1 -0.8602 -6.1355 1.9529 41 1 -1.6495 -9.7269 2.1598 42 1 2.3625 -6.0435 3.7042 43 1 2.9142 -4.5743 2.8642 44 1 1.1992 -3.2446 4.0638 45 1 0.6476 -4.7137 4.9039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598798138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:57 Heat of formation + Delta-G solvation = 31.225317 kcal Electronic energy + Delta-G solvation = -26200.641180 eV Core-core repulsion = 22604.679721 eV Total energy + Delta-G solvation = -3595.961459 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.30775 -39.06491 -36.94740 -36.21210 -35.12213 -32.91575 -32.74920 -30.84989 -30.10379 -28.71937 -26.95567 -26.72215 -24.79550 -24.01885 -22.80818 -21.69854 -20.74619 -18.50788 -17.63236 -17.29690 -16.47412 -16.20033 -15.97249 -15.56724 -15.29229 -14.89905 -14.69546 -14.54866 -14.15129 -13.90102 -13.63784 -13.37779 -13.28394 -13.13169 -12.80245 -12.47740 -12.43439 -12.24188 -12.18883 -11.96345 -11.84843 -11.63313 -11.47976 -11.33066 -11.26516 -11.11481 -11.00764 -10.82594 -10.61820 -10.19241 -9.73622 -9.08116 -8.90273 -8.62552 -8.48165 -8.31694 -7.84480 -6.09983 -4.14778 1.18241 1.27623 2.72476 2.81052 3.27575 3.29165 3.33949 3.37087 3.46242 3.62750 3.92033 4.27385 4.40904 4.78008 4.80923 4.91705 4.94568 5.02841 5.09924 5.21852 5.24669 5.26172 5.31077 5.39587 5.46523 5.52527 5.62448 5.70064 5.76459 5.80898 5.81676 5.84337 6.05590 6.22711 6.29393 6.37100 6.37744 6.56283 6.75127 6.80715 6.97673 7.35561 7.41339 7.45618 7.57155 7.85957 8.16132 8.25462 8.83183 8.99204 9.50783 10.98044 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.003825 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.877118 B = 7319.262345 C = 8539.833000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.058 4.058 3 C -0.119 4.119 4 C -0.123 4.123 5 C -0.120 4.120 6 C -0.146 4.146 7 C 0.090 3.910 8 N -0.485 5.485 9 C 0.024 3.976 10 C 0.038 3.962 11 C 0.510 3.490 12 O -0.513 6.513 13 N -0.598 5.598 14 C 0.247 3.753 15 C -0.530 4.530 16 H 0.057 0.943 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.896 3.104 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.118 3.882 24 C -0.051 4.051 25 C 0.217 3.783 26 N -0.446 5.446 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.022 0.978 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.034 0.966 40 H 0.047 0.953 41 H 0.264 0.736 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.195 17.761 -2.284 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.059 4.059 3 C -0.138 4.138 4 C -0.141 4.141 5 C -0.139 4.139 6 C -0.166 4.166 7 C -0.004 4.004 8 N -0.206 5.206 9 C -0.122 4.122 10 C -0.092 4.092 11 C 0.296 3.704 12 O -0.388 6.388 13 N -0.331 5.331 14 C 0.128 3.872 15 C -0.568 4.568 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.724 3.276 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.009 4.009 24 C -0.093 4.093 25 C -0.101 4.101 26 N -0.123 5.123 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.041 0.959 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.124 0.876 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.230 17.809 -1.526 19.281 hybrid contribution 1.118 -1.133 -0.693 1.736 sum 8.348 16.675 -2.219 18.780 Atomic orbital electron populations 1.20684 0.90383 1.02949 1.02485 1.19897 0.96736 0.91296 0.97951 1.21008 0.94144 0.97365 1.01276 1.21121 0.94341 0.97897 1.00705 1.20975 0.99642 0.92311 1.00925 1.21705 0.94809 0.98517 1.01558 1.18754 0.89979 0.91044 1.00611 1.59212 1.56228 1.02518 1.02599 1.22625 0.99089 1.00244 0.90284 1.22177 0.97800 0.94903 0.94307 1.20088 0.85290 0.82922 0.82142 1.90662 1.35041 1.74323 1.38749 1.48219 1.33762 1.27283 1.23814 1.19329 0.89153 0.81201 0.97515 1.21369 1.05699 0.95941 1.33828 0.92518 1.24907 0.94790 0.98714 0.95484 1.69910 1.13541 1.26431 1.43284 0.86592 0.78804 0.81719 0.80507 1.20292 1.21192 1.20189 1.21300 0.90646 1.00719 0.88237 1.19914 0.93846 1.03651 0.91846 1.29111 0.94137 0.92867 0.93981 1.81204 1.10876 1.09281 1.10942 0.91325 0.92481 0.89753 0.85941 0.86277 0.86362 0.86344 0.95937 0.88199 0.91538 0.92085 0.88486 0.94770 0.93483 0.92602 0.88708 0.90916 0.87587 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.77 36.00 0.35 -0.82 16 2 C -0.06 -0.66 5.90 -104.42 -0.62 -1.28 16 3 C -0.12 -1.16 9.70 -39.61 -0.38 -1.55 16 4 C -0.12 -1.13 10.04 -39.55 -0.40 -1.52 16 5 C -0.12 -1.17 10.04 -39.61 -0.40 -1.56 16 6 C -0.15 -1.62 8.66 -39.38 -0.34 -1.96 16 7 C 0.09 1.11 4.66 -83.79 -0.39 0.72 16 8 N -0.48 -6.75 3.42 -180.33 -0.62 -7.37 16 9 C 0.02 0.34 9.02 60.07 0.54 0.88 16 10 C 0.04 0.52 3.58 -4.98 -0.02 0.50 16 11 C 0.51 9.15 7.37 -10.98 -0.08 9.07 16 12 O -0.51 -11.43 13.91 5.56 0.08 -11.36 16 13 N -0.60 -10.66 2.46 -175.06 -0.43 -11.09 16 14 C 0.25 5.72 5.16 -5.20 -0.03 5.70 16 15 C -0.53 -13.88 9.39 -34.44 -0.32 -14.20 16 16 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 19 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.12 1.54 5.17 -4.04 -0.02 1.52 16 24 C -0.05 -0.53 6.03 -29.51 -0.18 -0.71 16 25 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 26 N -0.45 -6.58 18.54 42.15 0.78 -5.80 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.08 1.07 7.46 -51.93 -0.39 0.69 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.12 1.25 7.14 -52.49 -0.37 0.87 16 34 H 0.02 0.29 7.35 -51.93 -0.38 -0.09 16 35 H 0.10 1.72 5.82 -51.93 -0.30 1.42 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.75 6.73 -51.93 -0.35 0.40 16 38 H 0.10 1.12 7.10 -51.93 -0.37 0.76 16 39 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 40 H 0.05 1.25 7.42 -51.93 -0.39 0.87 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 43 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 44 H 0.11 0.93 7.22 -51.93 -0.38 0.55 16 45 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -31.84 379.46 -8.05 -39.89 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.60 Total: -0.18 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.70 Total: -1.28 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.47 Total: -48.75 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.84 -8.05 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598798138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.111 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds