Wall clock time and date at job start Tue Mar 31 2020 10:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38127 * 120.04013 * 2 1 4 4 C 1.38259 * 120.07752 * 179.97438 * 3 2 1 5 5 C 1.38306 * 120.14966 * 359.97438 * 4 3 2 6 6 C 1.38085 * 120.07542 * 0.02562 * 5 4 3 7 7 C 1.38894 * 120.03876 * 179.97438 * 2 1 3 8 8 N 1.39670 * 120.07267 * 0.04219 * 7 2 1 9 9 C 1.46903 * 111.00008 * 116.02513 * 8 7 2 10 10 C 1.46900 * 111.00106 * 239.97922 * 8 7 2 11 11 C 1.50702 * 109.47067 * 170.00015 * 10 8 7 12 12 O 1.21279 * 120.00184 * 0.02562 * 11 10 8 13 13 N 1.34779 * 119.99919 * 179.97438 * 11 10 8 14 14 C 1.46502 * 119.99587 * 179.97438 * 13 11 10 15 15 C 1.50693 * 109.47052 * 90.00734 * 14 13 11 16 16 H 1.08005 * 120.00465 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00473 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99195 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00536 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47134 * 59.99462 * 19 17 15 21 21 H 1.48493 * 109.47555 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47022 * 299.99818 * 19 17 15 23 23 C 1.46498 * 119.99992 * 0.02562 * 13 11 10 24 24 C 1.53007 * 109.47096 * 89.99874 * 23 13 11 25 25 C 1.47200 * 109.46985 * 179.97438 * 24 23 13 26 26 N 7.59228 * 104.11545 * 121.77908 * 2 1 3 27 27 H 1.09002 * 109.47718 * 270.02603 * 1 2 3 28 28 H 1.09001 * 109.47460 * 30.02673 * 1 2 3 29 29 H 1.08998 * 109.47084 * 150.02261 * 1 2 3 30 30 H 1.07998 * 119.96050 * 359.96813 * 3 2 1 31 31 H 1.08006 * 119.92718 * 180.02562 * 4 3 2 32 32 H 1.08001 * 119.96393 * 180.28488 * 5 4 3 33 33 H 1.07996 * 120.03483 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.46823 * 59.99805 * 9 8 7 35 35 H 1.08998 * 109.47431 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47132 * 300.00573 * 9 8 7 37 37 H 1.08997 * 109.47239 * 289.99856 * 10 8 7 38 38 H 1.09000 * 109.46838 * 50.00409 * 10 8 7 39 39 H 1.09002 * 109.47078 * 210.00174 * 14 13 11 40 40 H 1.08994 * 109.47612 * 330.00008 * 14 13 11 41 41 H 0.97005 * 119.99504 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.46854 * 209.99475 * 23 13 11 43 43 H 1.09000 * 109.47131 * 329.99701 * 23 13 11 44 44 H 1.08998 * 109.46883 * 299.99970 * 24 23 13 45 45 H 1.09000 * 109.47272 * 59.99913 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5810 1.1966 0.0005 5 6 4.2764 0.0011 0.0016 6 6 3.5915 -1.1979 0.0016 7 6 2.2022 -1.2024 0.0005 8 7 1.5062 -2.4133 0.0002 9 6 1.7664 -3.1697 -1.2320 10 6 1.8380 -3.2116 1.1879 11 6 0.8979 -4.3857 1.2827 12 8 0.0367 -4.5423 0.4432 13 7 1.0149 -5.2622 2.2998 14 6 0.1007 -6.4032 2.3922 15 6 0.6843 -7.5760 1.6473 16 1 1.6404 -7.4810 1.1540 17 6 -0.0023 -8.7706 1.5954 18 7 -1.1662 -8.8866 2.1966 19 14 0.7207 -10.2242 0.6715 20 1 2.0305 -10.5887 1.2691 21 1 -0.2052 -11.3812 0.7662 22 1 0.9122 -9.8584 -0.7549 23 6 2.0556 -5.0733 3.3135 24 6 1.5062 -4.2147 4.4545 25 6 2.5516 -4.0254 5.4734 26 7 3.3585 -3.8777 6.2592 27 1 -0.3634 0.0005 1.0276 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6584 2.1310 -0.0005 31 1 4.1192 2.1330 0.0010 32 1 5.3564 0.0053 0.0067 33 1 4.1352 -2.1310 0.0029 34 1 2.8331 -3.3796 -1.3110 35 1 1.2127 -4.1082 -1.2060 36 1 1.4469 -2.5826 -2.0930 37 1 2.8633 -3.5726 1.1082 38 1 1.7386 -2.5936 2.0803 39 1 -0.0406 -6.6717 3.4391 40 1 -0.8602 -6.1355 1.9529 41 1 -1.6495 -9.7269 2.1598 42 1 2.3625 -6.0435 3.7042 43 1 2.9142 -4.5743 2.8642 44 1 1.1992 -3.2446 4.0638 45 1 0.6476 -4.7137 4.9039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598798138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:56 Heat of formation + Delta-G solvation = 13.713119 kcal Electronic energy + Delta-G solvation = -26201.400566 eV Core-core repulsion = 22604.679721 eV Total energy + Delta-G solvation = -3596.720845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.35883 -40.25428 -38.04911 -37.26246 -36.49991 -34.84159 -33.53990 -32.16395 -31.03332 -30.04365 -28.37034 -27.72513 -25.91026 -25.29235 -24.34966 -22.61499 -21.60933 -19.88132 -18.82036 -18.36024 -18.32021 -17.24327 -17.16094 -16.73770 -16.33711 -16.17453 -15.96780 -15.71845 -15.35189 -15.01942 -14.70280 -14.52085 -14.28000 -14.14818 -14.00676 -13.85287 -13.57329 -13.53351 -13.25489 -13.10663 -12.97807 -12.84557 -12.75116 -12.66943 -12.56291 -12.47285 -12.15211 -12.10575 -11.95454 -11.81340 -11.65833 -10.56581 -10.51069 -9.68465 -9.47309 -9.41512 -9.34070 -8.16047 -6.28181 0.39812 0.51763 1.40929 1.43531 1.50191 1.68002 1.83268 1.91640 2.20935 2.44550 2.85106 2.90016 3.14443 3.18404 3.76379 4.00821 4.05171 4.07526 4.09792 4.21421 4.25756 4.30944 4.44226 4.47191 4.53047 4.58821 4.70923 4.82904 4.84727 4.91247 4.96220 5.04851 5.09310 5.11665 5.13660 5.36768 5.47176 5.56308 5.63475 5.64588 5.73882 5.78040 5.91475 6.01047 6.15409 6.52122 6.59589 6.77678 6.83960 7.36967 7.57001 8.90384 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.003825 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.877118 B = 7319.262345 C = 8539.833000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.073 4.073 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.153 4.153 7 C 0.070 3.930 8 N -0.497 5.497 9 C 0.032 3.968 10 C 0.051 3.949 11 C 0.506 3.494 12 O -0.565 6.565 13 N -0.598 5.598 14 C 0.263 3.737 15 C -0.539 4.539 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.926 5.926 19 Si 0.956 3.044 20 H -0.264 1.264 21 H -0.283 1.283 22 H -0.279 1.279 23 C 0.114 3.886 24 C -0.038 4.038 25 C 0.245 3.755 26 N -0.488 5.488 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.139 0.861 33 H 0.122 0.878 34 H 0.035 0.965 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.124 0.876 39 H 0.033 0.967 40 H 0.004 0.996 41 H 0.265 0.735 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.133 0.867 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.427 19.752 -2.138 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.074 4.074 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.141 4.141 6 C -0.173 4.173 7 C -0.023 4.023 8 N -0.217 5.217 9 C -0.115 4.115 10 C -0.078 4.078 11 C 0.294 3.706 12 O -0.443 6.443 13 N -0.330 5.330 14 C 0.142 3.858 15 C -0.578 4.578 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.566 5.566 19 Si 0.781 3.219 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.205 1.205 23 C -0.011 4.011 24 C -0.080 4.080 25 C -0.072 4.072 26 N -0.166 5.166 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.157 0.843 33 H 0.140 0.860 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.141 0.859 39 H 0.051 0.949 40 H 0.022 0.978 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.151 0.849 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.506 19.824 -1.352 22.027 hybrid contribution 0.423 -1.668 -0.770 1.885 sum 9.929 18.156 -2.122 20.802 Atomic orbital electron populations 1.20619 0.90556 1.02494 1.02385 1.20056 0.96870 0.91806 0.98643 1.21274 0.94687 0.97486 1.00393 1.21484 0.94252 0.98894 0.99121 1.21273 1.00812 0.91957 1.00034 1.21778 0.94242 0.99405 1.01844 1.18787 0.90601 0.90280 1.02658 1.59089 1.57324 1.03132 1.02201 1.22445 0.99186 0.98777 0.91078 1.22107 0.96971 0.93270 0.95491 1.20909 0.85153 0.83622 0.80952 1.90646 1.37395 1.75704 1.40588 1.48077 1.33920 1.25869 1.25143 1.18771 0.88419 0.82250 0.96403 1.21719 1.05495 0.96993 1.33595 0.92859 1.25704 0.95170 1.01455 0.96376 1.70020 1.14752 1.27069 1.44714 0.85643 0.78618 0.78648 0.78958 1.18858 1.20838 1.20478 1.21503 0.90191 1.01323 0.88062 1.19836 0.93131 1.04510 0.90475 1.29133 0.93322 0.91468 0.93254 1.81245 1.12161 1.10896 1.12284 0.91264 0.90702 0.92404 0.83854 0.83626 0.84306 0.86027 0.94644 0.91761 0.91214 0.90144 0.85860 0.94855 0.97774 0.92613 0.89628 0.88032 0.84935 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.15 9.77 71.23 0.70 -1.45 16 2 C -0.07 -1.53 5.90 -19.74 -0.12 -1.65 16 3 C -0.12 -1.97 9.70 22.25 0.22 -1.75 16 4 C -0.12 -1.75 10.04 22.29 0.22 -1.52 16 5 C -0.12 -1.96 10.04 22.25 0.22 -1.73 16 6 C -0.15 -3.00 8.66 22.40 0.19 -2.81 16 7 C 0.07 1.61 4.66 38.21 0.18 1.79 16 8 N -0.50 -13.54 3.42 -724.43 -2.48 -16.01 16 9 C 0.03 0.92 9.02 127.69 1.15 2.07 16 10 C 0.05 1.30 3.58 85.56 0.31 1.61 16 11 C 0.51 18.27 7.37 87.66 0.65 18.91 16 12 O -0.57 -26.38 13.91 -3.03 -0.04 -26.43 16 13 N -0.60 -21.30 2.46 -826.15 -2.03 -23.32 16 14 C 0.26 12.57 5.16 85.63 0.44 13.02 16 15 C -0.54 -28.84 9.39 25.60 0.24 -28.60 16 16 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 17 C 0.01 0.67 5.46 84.66 0.46 1.13 16 18 N -0.93 -53.55 13.29 21.45 0.28 -53.27 16 19 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 C 0.11 2.79 5.17 86.38 0.45 3.24 16 24 C -0.04 -0.71 6.03 28.79 0.17 -0.54 16 25 C 0.25 5.42 15.43 89.44 1.38 6.80 16 26 N -0.49 -13.61 18.54 20.01 0.37 -13.24 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 29 H 0.06 1.50 7.46 -2.39 -0.02 1.48 16 30 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 31 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.12 2.24 7.14 -2.91 -0.02 2.22 16 34 H 0.04 0.89 7.35 -2.39 -0.02 0.88 16 35 H 0.06 2.33 5.82 -2.39 -0.01 2.32 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.08 1.77 6.73 -2.39 -0.02 1.75 16 38 H 0.12 2.49 7.10 -2.39 -0.02 2.47 16 39 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 40 H 0.00 0.23 7.42 -2.39 -0.02 0.22 16 41 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 42 H 0.09 2.29 8.07 -2.38 -0.02 2.27 16 43 H 0.10 1.93 6.44 -2.39 -0.02 1.91 16 44 H 0.13 1.86 7.22 -2.39 -0.02 1.84 16 45 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -72.03 379.46 5.99 -66.04 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.99 Total: 12.30 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 6.86 Total: 8.51 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -3.85 Total: -105.84 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.04 Total: -26.43 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -72.03 5.99 -66.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598798138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.754 kcal (2) G-P(sol) polarization free energy of solvation -72.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds