Wall clock time and date at job start Tue Mar 31 2020 11:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38677 * 120.78689 * 2 1 4 4 C 1.38176 * 119.16109 * 179.97438 * 3 2 1 5 5 N 1.31884 * 120.77148 * 359.97438 * 4 3 2 6 6 C 1.31856 * 121.72089 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.61967 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47337 * 225.00221 * 7 6 5 9 9 C 1.53001 * 109.46925 * 105.00239 * 7 6 5 10 10 C 1.50706 * 109.46906 * 345.00868 * 7 6 5 11 11 N 1.29946 * 126.28426 * 0.02562 * 10 7 6 12 12 O 1.21309 * 110.24521 * 179.68915 * 11 10 7 13 13 C 1.33639 * 109.80928 * 0.46841 * 12 11 10 14 14 C 1.50706 * 126.55037 * 179.79972 * 13 12 11 15 15 C 1.52997 * 109.47238 * 269.69219 * 14 13 12 16 16 C 1.52996 * 109.46947 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46946 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00275 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99908 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99794 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99992 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47123 * 90.00328 * 21 19 17 23 23 H 1.48506 * 109.46940 * 210.00450 * 21 19 17 24 24 H 1.48509 * 109.47046 * 330.00079 * 21 19 17 25 25 N 1.31128 * 106.90120 * 359.54177 * 13 12 11 26 26 C 1.38234 * 120.76464 * 0.28049 * 6 5 4 27 27 H 1.08997 * 109.46948 * 90.00240 * 1 2 3 28 28 H 1.09003 * 109.47007 * 209.99653 * 1 2 3 29 29 H 1.09003 * 109.47600 * 330.00090 * 1 2 3 30 30 H 1.07998 * 120.41970 * 359.97438 * 3 2 1 31 31 H 1.08008 * 119.61734 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.46789 * 179.97438 * 8 7 6 33 33 H 1.08993 * 109.47044 * 300.00181 * 8 7 6 34 34 H 1.09001 * 109.46929 * 60.00527 * 8 7 6 35 35 H 1.09001 * 109.47018 * 300.00616 * 9 7 6 36 36 H 1.09006 * 109.46952 * 60.00261 * 9 7 6 37 37 H 1.08995 * 109.46885 * 179.97438 * 9 7 6 38 38 H 1.09001 * 109.46953 * 29.68831 * 14 13 12 39 39 H 1.09000 * 109.47318 * 149.68429 * 14 13 12 40 40 H 1.09001 * 109.46832 * 299.99686 * 15 14 13 41 41 H 1.09004 * 109.47261 * 59.99705 * 15 14 13 42 42 H 1.08992 * 109.47554 * 299.99696 * 16 15 14 43 43 H 1.08996 * 109.47261 * 60.00229 * 16 15 14 44 44 H 0.96996 * 119.99562 * 180.02562 * 20 19 17 45 45 H 1.08003 * 120.41765 * 179.69857 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1521 0.0005 5 7 4.2403 0.0003 0.0016 6 6 3.5984 -1.1515 0.0016 7 6 4.3801 -2.4399 0.0034 8 6 3.7739 -3.4057 -1.0167 9 6 4.3238 -3.0686 1.3971 10 6 5.8145 -2.1576 -0.3627 11 7 6.3227 -0.9943 -0.6403 12 8 7.5053 -1.1012 -0.8885 13 6 7.8726 -2.3831 -0.7997 14 6 9.2530 -2.9396 -1.0364 15 6 9.4030 -3.3219 -2.5102 16 6 10.8046 -3.8863 -2.7506 17 6 10.9521 -4.2634 -4.2022 18 1 10.1287 -4.1150 -4.8851 19 6 12.1383 -4.7980 -4.6584 20 7 12.2672 -5.1267 -5.9253 21 14 13.5628 -5.0541 -3.4775 22 1 13.4707 -6.4093 -2.8773 23 1 14.8458 -4.9251 -4.2141 24 1 13.5043 -4.0315 -2.4022 25 7 6.8038 -3.0634 -0.4618 26 6 2.2166 -1.1908 -0.0053 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6966 2.1378 -0.0004 31 1 4.1582 2.0756 0.0010 32 1 4.3396 -4.3374 -1.0157 33 1 2.7365 -3.6098 -0.7518 34 1 3.8141 -2.9578 -2.0096 35 1 4.7556 -2.3805 2.1238 36 1 3.2863 -3.2727 1.6619 37 1 4.8888 -4.0007 1.3982 38 1 9.9975 -2.1863 -0.7789 39 1 9.4001 -3.8230 -0.4150 40 1 8.6584 -4.0752 -2.7677 41 1 9.2559 -2.4384 -3.1315 42 1 11.5488 -3.1328 -2.4932 43 1 10.9520 -4.7697 -2.1293 44 1 13.1016 -5.5031 -6.2462 45 1 1.6966 -2.1374 -0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599184268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:40 Heat of formation + Delta-G solvation = 90.529927 kcal Electronic energy + Delta-G solvation = -25482.684425 eV Core-core repulsion = 21889.294607 eV Total energy + Delta-G solvation = -3593.389818 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.20446 -40.77904 -37.24063 -35.59572 -34.33889 -34.07520 -32.62744 -31.18063 -30.46101 -28.29197 -28.03449 -27.52830 -25.16607 -24.00716 -23.28925 -22.57247 -21.93998 -20.27798 -19.64699 -17.63659 -17.27594 -16.77136 -16.64289 -16.27565 -15.69551 -14.88064 -14.80355 -14.64249 -14.29276 -14.25136 -13.85525 -13.70252 -13.10220 -12.98452 -12.92628 -12.81267 -12.46452 -12.39603 -12.30542 -12.26251 -11.75772 -11.72483 -11.58258 -11.40646 -11.24956 -10.99173 -10.81250 -10.66062 -10.05659 -9.92678 -9.76935 -9.73818 -9.47408 -9.34712 -9.22659 -9.17357 -8.53504 -6.03571 -4.02161 0.83490 1.02268 1.56189 2.53282 3.22107 3.31909 3.39441 3.41871 3.50878 3.65771 3.77335 4.24412 4.37730 4.45547 4.46875 4.67707 4.74979 4.82191 4.85920 5.02552 5.10978 5.23230 5.26908 5.30010 5.34236 5.41803 5.46016 5.50861 5.54950 5.55832 5.59945 5.64622 5.74087 5.87945 5.91677 5.96960 6.02339 6.14385 6.27997 6.45037 6.47727 6.50874 6.80593 7.24734 7.37687 7.77907 7.85631 8.53673 8.57422 9.01351 9.58063 11.09885 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028206 B = 0.002362 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.463167 B =11852.450666 C =11929.093307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.045 4.045 3 C -0.179 4.179 4 C 0.106 3.894 5 N -0.450 5.450 6 C 0.135 3.865 7 C 0.084 3.916 8 C -0.138 4.138 9 C -0.133 4.133 10 C 0.163 3.837 11 N -0.333 5.333 12 O 0.067 5.933 13 C 0.189 3.811 14 C -0.033 4.033 15 C -0.098 4.098 16 C -0.012 4.012 17 C -0.521 4.521 18 H 0.072 0.928 19 C 0.065 3.935 20 N -0.903 5.903 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 N -0.486 5.486 26 C -0.165 4.165 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.155 0.845 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.020 0.980 43 H 0.016 0.984 44 H 0.263 0.737 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.364 9.570 16.393 30.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.199 4.199 4 C -0.051 4.051 5 N -0.158 5.158 6 C -0.004 4.004 7 C 0.082 3.918 8 C -0.196 4.196 9 C -0.191 4.191 10 C -0.110 4.110 11 N -0.038 5.038 12 O 0.008 5.992 13 C -0.031 4.031 14 C -0.072 4.072 15 C -0.137 4.137 16 C -0.050 4.050 17 C -0.559 4.559 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.542 5.542 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.189 1.189 25 N -0.219 5.219 26 C -0.185 4.185 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.172 0.828 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.034 0.966 44 H 0.073 0.927 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -23.034 9.902 16.373 29.944 hybrid contribution 0.072 -0.069 0.354 0.368 sum -22.962 9.832 16.727 30.062 Atomic orbital electron populations 1.20816 0.90183 1.03268 1.02923 1.20280 0.96707 0.92864 0.95470 1.22075 0.95782 0.98590 1.03432 1.22823 0.91532 0.96284 0.94510 1.67729 1.40160 0.97580 1.10348 1.20916 0.90772 0.93132 0.95532 1.17713 0.84373 0.91798 0.97946 1.21933 1.00892 0.99070 0.97731 1.21852 1.02766 1.01497 0.93006 1.25105 0.98057 0.85039 1.02810 1.75082 0.90135 1.21939 1.16655 1.85397 1.20194 1.30248 1.63369 1.29097 0.99197 0.80537 0.94256 1.20558 0.83789 1.01275 1.01581 1.21526 1.00860 1.01168 0.90119 1.19574 0.91605 0.95833 0.97950 1.21103 1.00420 1.41559 0.92835 0.91032 1.25045 0.98569 0.94936 0.95031 1.69918 1.26477 1.43543 1.14276 0.86764 0.81907 0.79055 0.81465 1.20274 1.21440 1.18867 1.71783 0.98288 1.31266 1.20577 1.21723 0.94292 0.98932 1.03513 0.90499 0.91016 0.91046 0.84960 0.82772 0.90153 0.91063 0.92106 0.92293 0.91239 0.90306 0.88550 0.87792 0.91856 0.92031 0.96172 0.96609 0.92727 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 10.06 36.00 0.36 -0.22 16 2 C -0.05 -0.37 5.92 -104.32 -0.62 -0.99 16 3 C -0.18 -1.53 9.82 -39.44 -0.39 -1.91 16 4 C 0.11 1.14 11.18 -17.55 -0.20 0.95 16 5 N -0.45 -6.18 7.46 -9.47 -0.07 -6.25 16 6 C 0.14 1.64 5.55 -82.58 -0.46 1.19 16 7 C 0.08 1.03 0.84 -156.81 -0.13 0.90 16 8 C -0.14 -1.45 8.06 37.16 0.30 -1.15 16 9 C -0.13 -1.35 8.39 37.16 0.31 -1.04 16 10 C 0.16 2.57 6.34 -156.37 -0.99 1.58 16 11 N -0.33 -5.70 9.55 30.90 0.30 -5.41 16 12 O 0.07 1.14 11.31 18.11 0.20 1.35 16 13 C 0.19 3.07 7.77 -13.05 -0.10 2.97 16 14 C -0.03 -0.50 5.84 -27.88 -0.16 -0.66 16 15 C -0.10 -1.87 5.13 -26.73 -0.14 -2.00 16 16 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 17 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 18 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 19 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 20 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 21 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 25 N -0.49 -8.00 11.55 -9.87 -0.11 -8.11 16 26 C -0.16 -1.54 8.80 -39.44 -0.35 -1.88 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 29 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 30 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.53 6.69 -51.93 -0.35 0.18 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 43 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.14 0.93 6.71 -52.48 -0.35 0.58 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -33.80 373.09 -8.02 -41.83 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.97 Total: -2.74 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -3.10 Total: -15.92 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.88 Total: -46.84 kcal Atomic # 8 Polarization: 1.14 SS G_CDS: 0.20 Total: 1.35 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.80 -8.02 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599184268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.357 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds