Wall clock time and date at job start Tue Mar 31 2020 11:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38677 * 120.78689 * 2 1 4 4 C 1.38176 * 119.16109 * 179.97438 * 3 2 1 5 5 N 1.31884 * 120.77148 * 359.97438 * 4 3 2 6 6 C 1.31856 * 121.72089 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.61967 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47337 * 225.00221 * 7 6 5 9 9 C 1.53001 * 109.46925 * 105.00239 * 7 6 5 10 10 C 1.50706 * 109.46906 * 345.00868 * 7 6 5 11 11 N 1.29946 * 126.28426 * 0.02562 * 10 7 6 12 12 O 1.21309 * 110.24521 * 179.68915 * 11 10 7 13 13 C 1.33639 * 109.80928 * 0.46841 * 12 11 10 14 14 C 1.50706 * 126.55037 * 179.79972 * 13 12 11 15 15 C 1.52997 * 109.47238 * 269.69219 * 14 13 12 16 16 C 1.52996 * 109.46947 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46946 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00275 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99908 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99794 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99992 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47123 * 90.00328 * 21 19 17 23 23 H 1.48506 * 109.46940 * 210.00450 * 21 19 17 24 24 H 1.48509 * 109.47046 * 330.00079 * 21 19 17 25 25 N 1.31128 * 106.90120 * 359.54177 * 13 12 11 26 26 C 1.38234 * 120.76464 * 0.28049 * 6 5 4 27 27 H 1.08997 * 109.46948 * 90.00240 * 1 2 3 28 28 H 1.09003 * 109.47007 * 209.99653 * 1 2 3 29 29 H 1.09003 * 109.47600 * 330.00090 * 1 2 3 30 30 H 1.07998 * 120.41970 * 359.97438 * 3 2 1 31 31 H 1.08008 * 119.61734 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.46789 * 179.97438 * 8 7 6 33 33 H 1.08993 * 109.47044 * 300.00181 * 8 7 6 34 34 H 1.09001 * 109.46929 * 60.00527 * 8 7 6 35 35 H 1.09001 * 109.47018 * 300.00616 * 9 7 6 36 36 H 1.09006 * 109.46952 * 60.00261 * 9 7 6 37 37 H 1.08995 * 109.46885 * 179.97438 * 9 7 6 38 38 H 1.09001 * 109.46953 * 29.68831 * 14 13 12 39 39 H 1.09000 * 109.47318 * 149.68429 * 14 13 12 40 40 H 1.09001 * 109.46832 * 299.99686 * 15 14 13 41 41 H 1.09004 * 109.47261 * 59.99705 * 15 14 13 42 42 H 1.08992 * 109.47554 * 299.99696 * 16 15 14 43 43 H 1.08996 * 109.47261 * 60.00229 * 16 15 14 44 44 H 0.96996 * 119.99562 * 180.02562 * 20 19 17 45 45 H 1.08003 * 120.41765 * 179.69857 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1521 0.0005 5 7 4.2403 0.0003 0.0016 6 6 3.5984 -1.1515 0.0016 7 6 4.3801 -2.4399 0.0034 8 6 3.7739 -3.4057 -1.0167 9 6 4.3238 -3.0686 1.3971 10 6 5.8145 -2.1576 -0.3627 11 7 6.3227 -0.9943 -0.6403 12 8 7.5053 -1.1012 -0.8885 13 6 7.8726 -2.3831 -0.7997 14 6 9.2530 -2.9396 -1.0364 15 6 9.4030 -3.3219 -2.5102 16 6 10.8046 -3.8863 -2.7506 17 6 10.9521 -4.2634 -4.2022 18 1 10.1287 -4.1150 -4.8851 19 6 12.1383 -4.7980 -4.6584 20 7 12.2672 -5.1267 -5.9253 21 14 13.5628 -5.0541 -3.4775 22 1 13.4707 -6.4093 -2.8773 23 1 14.8458 -4.9251 -4.2141 24 1 13.5043 -4.0315 -2.4022 25 7 6.8038 -3.0634 -0.4618 26 6 2.2166 -1.1908 -0.0053 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6966 2.1378 -0.0004 31 1 4.1582 2.0756 0.0010 32 1 4.3396 -4.3374 -1.0157 33 1 2.7365 -3.6098 -0.7518 34 1 3.8141 -2.9578 -2.0096 35 1 4.7556 -2.3805 2.1238 36 1 3.2863 -3.2727 1.6619 37 1 4.8888 -4.0007 1.3982 38 1 9.9975 -2.1863 -0.7789 39 1 9.4001 -3.8230 -0.4150 40 1 8.6584 -4.0752 -2.7677 41 1 9.2559 -2.4384 -3.1315 42 1 11.5488 -3.1328 -2.4932 43 1 10.9520 -4.7697 -2.1293 44 1 13.1016 -5.5031 -6.2462 45 1 1.6966 -2.1374 -0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599184268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:39 Heat of formation + Delta-G solvation = 69.539915 kcal Electronic energy + Delta-G solvation = -25483.594621 eV Core-core repulsion = 21889.294607 eV Total energy + Delta-G solvation = -3594.300013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.45801 -41.52572 -38.17381 -37.05291 -35.65068 -34.77211 -34.47569 -32.74149 -31.20558 -29.82323 -28.74919 -28.29500 -26.22529 -25.67095 -24.23853 -23.27510 -23.26978 -21.99254 -20.60721 -18.99067 -18.84937 -18.22704 -17.47700 -17.21521 -16.55793 -16.29324 -16.01200 -15.69210 -15.49891 -15.20639 -15.00689 -14.73099 -14.48192 -14.05229 -13.80678 -13.69828 -13.52775 -13.44894 -13.20412 -13.12794 -12.93903 -12.92037 -12.66070 -12.58130 -12.48592 -12.24115 -12.18372 -11.88938 -11.75048 -11.70625 -11.48254 -11.33159 -10.72201 -10.70244 -10.39374 -10.22818 -9.96293 -8.25351 -6.30345 0.11345 0.29266 0.34842 1.31806 1.42416 1.44703 1.56580 1.98799 2.41442 2.55946 2.81439 2.89824 3.10628 3.33435 3.56704 3.84025 3.90445 3.96982 4.09937 4.16675 4.18820 4.20743 4.25214 4.40292 4.52580 4.62297 4.65601 4.68123 4.72900 4.77173 4.80370 4.85216 4.89330 4.92197 4.93042 5.01177 5.06852 5.08195 5.15352 5.17665 5.25148 5.39742 5.49758 5.60294 5.69536 5.79405 6.31310 6.78134 7.10658 7.33240 7.33989 8.91823 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028206 B = 0.002362 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.463167 B =11852.450666 C =11929.093307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.047 4.047 3 C -0.174 4.174 4 C 0.082 3.918 5 N -0.494 5.494 6 C 0.111 3.889 7 C 0.078 3.922 8 C -0.133 4.133 9 C -0.125 4.125 10 C 0.163 3.837 11 N -0.352 5.352 12 O 0.055 5.945 13 C 0.185 3.815 14 C -0.021 4.021 15 C -0.088 4.088 16 C -0.009 4.009 17 C -0.535 4.535 18 H 0.024 0.976 19 C -0.002 4.002 20 N -0.956 5.956 21 Si 0.956 3.044 22 H -0.266 1.266 23 H -0.289 1.289 24 H -0.234 1.234 25 N -0.497 5.497 26 C -0.163 4.163 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.160 0.840 31 H 0.161 0.839 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.035 0.965 43 H 0.032 0.968 44 H 0.265 0.735 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.691 9.625 19.066 32.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.055 4.055 3 C -0.194 4.194 4 C -0.074 4.074 5 N -0.203 5.203 6 C -0.027 4.027 7 C 0.075 3.925 8 C -0.191 4.191 9 C -0.184 4.184 10 C -0.111 4.111 11 N -0.060 5.060 12 O -0.002 6.002 13 C -0.035 4.035 14 C -0.059 4.059 15 C -0.127 4.127 16 C -0.047 4.047 17 C -0.573 4.573 18 H 0.042 0.958 19 C -0.198 4.198 20 N -0.597 5.597 21 Si 0.779 3.221 22 H -0.191 1.191 23 H -0.215 1.215 24 H -0.157 1.157 25 N -0.231 5.231 26 C -0.183 4.183 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.177 0.823 31 H 0.178 0.822 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -24.368 9.974 19.058 32.504 hybrid contribution 0.344 -0.040 -0.574 0.670 sum -24.024 9.934 18.484 31.898 Atomic orbital electron populations 1.20886 0.87556 1.04633 1.03791 1.20726 0.98509 0.92264 0.94007 1.22374 0.94912 1.00170 1.01899 1.23082 0.92954 0.95929 0.95450 1.67603 1.41911 0.98791 1.12021 1.21012 0.91991 0.92542 0.97171 1.18026 0.82426 0.92789 0.99252 1.21925 1.02850 0.97954 0.96347 1.21822 1.04591 1.00561 0.91398 1.25860 0.99495 0.84372 1.01364 1.75109 0.90180 1.22863 1.17812 1.85375 1.20459 1.30610 1.63739 1.29296 0.99560 0.80500 0.94162 1.20470 0.83930 1.02863 0.98674 1.21283 0.98442 1.00003 0.92987 1.19523 0.93950 0.96889 0.94324 1.21510 0.99175 1.41383 0.95255 0.95752 1.26136 1.02142 0.94545 0.97013 1.70095 1.27595 1.45111 1.16911 0.85573 0.77061 0.80147 0.79355 1.19092 1.21519 1.15708 1.71797 0.98659 1.31649 1.20949 1.21985 0.93180 1.00610 1.02504 0.89683 0.89687 0.89750 0.82250 0.82156 0.90879 0.87460 0.93980 0.93799 0.88135 0.90645 0.85924 0.85884 0.93488 0.93255 0.94654 0.95015 0.92594 0.82131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.06 71.24 0.72 -0.03 16 2 C -0.05 -0.66 5.92 -19.67 -0.12 -0.78 16 3 C -0.17 -2.68 9.82 22.36 0.22 -2.46 16 4 C 0.08 1.79 11.18 84.67 0.95 2.73 16 5 N -0.49 -13.77 7.46 -183.88 -1.37 -15.14 16 6 C 0.11 2.63 5.55 42.56 0.24 2.87 16 7 C 0.08 1.86 0.84 -53.67 -0.05 1.81 16 8 C -0.13 -2.65 8.06 71.98 0.58 -2.07 16 9 C -0.13 -2.40 8.39 71.98 0.60 -1.79 16 10 C 0.16 5.19 6.34 138.47 0.88 6.06 16 11 N -0.35 -12.39 9.55 -60.32 -0.58 -12.97 16 12 O 0.05 1.89 11.31 74.86 0.85 2.74 16 13 C 0.18 5.96 7.77 88.38 0.69 6.64 16 14 C -0.02 -0.59 5.84 29.85 0.17 -0.42 16 15 C -0.09 -3.35 5.13 30.59 0.16 -3.19 16 16 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 17 C -0.54 -30.90 9.66 25.60 0.25 -30.65 16 18 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 19 C 0.00 -0.13 5.47 84.66 0.46 0.33 16 20 N -0.96 -60.73 13.96 21.45 0.30 -60.43 16 21 Si 0.96 43.28 27.47 68.60 1.88 45.16 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 24 H -0.23 -9.42 6.54 99.48 0.65 -8.77 16 25 N -0.50 -16.37 11.55 -303.20 -3.50 -19.87 16 26 C -0.16 -2.70 8.80 22.36 0.20 -2.50 16 27 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.08 0.37 8.10 -2.39 -0.02 0.35 16 29 H 0.08 0.37 8.10 -2.39 -0.02 0.35 16 30 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.11 1.29 6.69 -2.39 -0.02 1.28 16 34 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.10 1.25 8.09 -2.38 -0.02 1.23 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.04 1.47 7.20 -2.39 -0.02 1.45 16 43 H 0.03 1.32 7.57 -2.39 -0.02 1.30 16 44 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 45 H 0.16 1.65 6.71 -2.91 -0.02 1.63 16 Total: -1.00 -77.22 373.09 4.57 -72.66 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.92 Total: 11.58 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 6.07 Total: -23.73 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -5.15 Total: -108.42 kcal Atomic # 8 Polarization: 1.89 SS G_CDS: 0.85 Total: 2.74 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.16 kcal Total: -77.22 4.57 -72.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599184268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.196 kcal (2) G-P(sol) polarization free energy of solvation -77.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds