Wall clock time and date at job start Tue Mar 31 2020 10:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38374 * 119.85813 * 2 1 4 4 C 1.37945 * 120.14799 * 180.29763 * 3 2 1 5 5 C 1.39583 * 119.84924 * 359.72161 * 4 3 2 6 6 C 1.47856 * 120.13982 * 179.97438 * 5 4 3 7 7 N 1.31235 * 126.37742 * 179.70778 * 6 5 4 8 8 N 1.28666 * 109.24528 * 179.88689 * 7 6 5 9 9 C 1.30387 * 109.52505 * 0.39047 * 8 7 6 10 10 C 1.50701 * 126.18509 * 179.74556 * 9 8 7 11 11 H 1.08996 * 109.46809 * 195.01858 * 10 9 8 12 12 C 1.53006 * 109.47067 * 75.01914 * 10 9 8 13 13 N 1.46899 * 109.46941 * 315.02470 * 10 9 8 14 14 C 1.46899 * 110.99607 * 205.00175 * 13 10 9 15 15 H 1.08996 * 109.47521 * 324.99620 * 14 13 10 16 16 C 1.53005 * 109.47170 * 84.99577 * 14 13 10 17 17 C 1.50701 * 109.46930 * 204.99324 * 14 13 10 18 18 H 1.07996 * 119.99904 * 0.02562 * 17 14 13 19 19 C 1.37877 * 119.99859 * 179.97438 * 17 14 13 20 20 N 1.31511 * 120.00317 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 119.99996 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47068 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47062 * 120.00295 * 21 19 17 24 24 H 1.48498 * 109.47139 * 240.00151 * 21 19 17 25 25 O 1.34411 * 107.62887 * 359.75915 * 9 8 7 26 26 C 1.39534 * 119.71776 * 0.02562 * 5 4 3 27 27 C 1.37988 * 119.85240 * 0.02562 * 26 5 4 28 28 C 1.50703 * 119.92718 * 179.97438 * 27 26 5 29 29 H 1.09002 * 109.46641 * 270.25223 * 1 2 3 30 30 H 1.08998 * 109.46888 * 30.25264 * 1 2 3 31 31 H 1.09000 * 109.47212 * 150.25689 * 1 2 3 32 32 H 1.07998 * 119.92608 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.07708 * 179.74324 * 4 3 2 34 34 H 1.08999 * 109.47157 * 300.00186 * 12 10 9 35 35 H 1.09004 * 109.46946 * 59.99961 * 12 10 9 36 36 H 1.08998 * 109.46572 * 179.97438 * 12 10 9 37 37 H 1.00909 * 110.99918 * 328.95058 * 13 10 9 38 38 H 1.08993 * 109.47458 * 299.99747 * 16 14 13 39 39 H 1.09003 * 109.47153 * 60.00263 * 16 14 13 40 40 H 1.09005 * 109.46970 * 179.97438 * 16 14 13 41 41 H 0.97000 * 120.00388 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.07361 * 179.97438 * 26 5 4 43 43 H 1.09002 * 109.47152 * 89.99950 * 28 27 26 44 44 H 1.09001 * 109.46980 * 330.00051 * 28 27 26 45 45 H 1.09004 * 109.47113 * 210.00032 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5753 1.2070 -0.0062 5 6 4.2762 -0.0001 -0.0066 6 6 5.7547 -0.0001 -0.0138 7 7 6.5331 -1.0567 -0.0096 8 7 7.7626 -0.6777 -0.0208 9 6 7.8171 0.6250 -0.0242 10 6 9.0695 1.4632 -0.0313 11 1 8.8204 2.4907 0.2335 12 6 9.6951 1.4335 -1.4273 13 7 10.0252 0.9236 0.9451 14 6 10.9512 1.9664 1.4068 15 1 11.1681 2.6494 0.5855 16 6 10.3115 2.7423 2.5600 17 6 12.2314 1.3276 1.8803 18 1 12.3457 0.2544 1.8417 19 6 13.2569 2.1133 2.3619 20 7 13.1178 3.4202 2.4084 21 14 14.8440 1.3215 2.9482 22 1 14.7491 -0.1522 2.7920 23 1 15.9801 1.8324 2.1397 24 1 15.0647 1.6551 4.3783 25 8 6.5542 1.0853 -0.0199 26 6 3.5755 -1.2067 -0.0013 27 6 2.1957 -1.1997 0.0038 28 6 1.4372 -2.5020 0.0090 29 1 -0.3633 0.0045 1.0277 30 1 -0.3633 0.8877 -0.5177 31 1 -0.3634 -0.8923 -0.5098 32 1 1.6524 2.1333 0.0004 33 1 4.1118 2.1443 -0.0104 34 1 9.9441 0.4059 -1.6921 35 1 8.9859 1.8338 -2.1518 36 1 10.6007 2.0401 -1.4324 37 1 9.5451 0.4962 1.7229 38 1 9.3857 3.2044 2.2176 39 1 10.0947 2.0594 3.3814 40 1 10.9988 3.5158 2.9028 41 1 13.8391 3.9730 2.7476 42 1 4.1120 -2.1441 -0.0019 43 1 1.2582 -2.8141 1.0380 44 1 2.0215 -3.2648 -0.5056 45 1 0.4834 -2.3690 -0.5015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602860420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:33 Heat of formation + Delta-G solvation = 55.451333 kcal Electronic energy + Delta-G solvation = -25228.779393 eV Core-core repulsion = 21633.868453 eV Total energy + Delta-G solvation = -3594.910940 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.01275 -39.92049 -36.97376 -36.03405 -34.43410 -33.35491 -32.66592 -31.12902 -29.81173 -27.80783 -27.20844 -26.89933 -25.22866 -24.27173 -23.58917 -22.26630 -21.20753 -20.82222 -19.85637 -17.63406 -17.19821 -16.74038 -16.31438 -15.79389 -15.57152 -15.14557 -14.83747 -14.68589 -14.18821 -13.89881 -13.49813 -13.24875 -13.18457 -13.02151 -12.79602 -12.46277 -12.34930 -12.23569 -12.02558 -11.88889 -11.75963 -11.65137 -11.57729 -11.41258 -11.32316 -10.97159 -10.90627 -10.63852 -10.56510 -10.18736 -10.09642 -9.89790 -9.13854 -9.06612 -8.51989 -8.40503 -7.47869 -6.03014 -4.05836 0.31831 1.00258 1.61867 2.19941 2.55453 3.31468 3.39390 3.40248 3.45880 3.75247 4.31963 4.40079 4.40952 4.51346 4.60342 4.67876 4.86429 4.95959 5.11150 5.13937 5.24620 5.28958 5.29678 5.36858 5.38487 5.40497 5.43213 5.48106 5.58120 5.70637 5.75640 5.79516 6.02982 6.07034 6.11029 6.22463 6.24260 6.53598 6.57150 6.61351 6.73384 6.96356 7.17477 7.64523 7.81474 8.13806 8.33045 8.42772 8.49179 9.01934 9.59538 11.04362 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.030023 B = 0.002322 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.380260 B =12057.151375 C =12268.082832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.068 4.068 3 C -0.118 4.118 4 C -0.088 4.088 5 C -0.017 4.017 6 C 0.188 3.812 7 N -0.275 5.275 8 N -0.262 5.262 9 C 0.178 3.822 10 C 0.180 3.820 11 H 0.067 0.933 12 C -0.133 4.133 13 N -0.661 5.661 14 C 0.211 3.789 15 H 0.041 0.959 16 C -0.173 4.173 17 C -0.493 4.493 18 H 0.066 0.934 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.286 1.286 25 O -0.223 6.223 26 C -0.066 4.066 27 C -0.089 4.089 28 C -0.117 4.117 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.334 0.666 38 H 0.004 0.996 39 H 0.029 0.971 40 H 0.093 0.907 41 H 0.260 0.740 42 H 0.140 0.860 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.745 -4.176 -6.185 26.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.069 4.069 3 C -0.136 4.136 4 C -0.107 4.107 5 C -0.019 4.019 6 C -0.020 4.020 7 N -0.123 5.123 8 N -0.109 5.109 9 C -0.032 4.032 10 C 0.069 3.931 11 H 0.085 0.915 12 C -0.191 4.191 13 N -0.294 5.294 14 C 0.104 3.896 15 H 0.059 0.941 16 C -0.233 4.233 17 C -0.532 4.532 18 H 0.085 0.915 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.212 1.212 25 O -0.102 6.102 26 C -0.085 4.085 27 C -0.089 4.089 28 C -0.174 4.174 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.152 0.848 38 H 0.023 0.977 39 H 0.049 0.951 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.158 0.842 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.780 -5.496 -6.617 26.231 hybrid contribution 0.050 1.586 1.050 1.903 sum -24.730 -3.911 -5.566 25.649 Atomic orbital electron populations 1.20925 0.90821 1.03213 1.02734 1.19990 0.96393 0.92532 0.97968 1.20930 0.93369 0.97928 1.01332 1.21251 0.94509 0.97069 0.97920 1.17178 0.83265 0.95026 1.06423 1.25396 0.94201 0.80339 1.02051 1.74742 0.96266 1.24798 1.16469 1.74500 1.10826 1.09089 1.16477 1.28678 0.84611 0.91991 0.97918 1.20148 0.81660 0.93407 0.97921 0.91482 1.21819 1.00944 1.03963 0.92396 1.61113 1.16928 1.33551 1.17814 1.19347 0.89671 0.87831 0.92775 0.94106 1.22495 0.98136 1.02357 1.00280 1.21129 0.97595 0.94079 1.40355 0.91536 1.24942 0.98775 0.94861 0.95947 1.69880 1.32809 1.03624 1.47439 0.86410 0.83054 0.79677 0.78109 1.19613 1.21112 1.21229 1.84839 1.17785 1.37657 1.69904 1.21052 0.93281 0.97208 0.96965 1.19670 0.92892 0.95421 1.00949 1.20879 1.00038 0.93676 1.02777 0.90697 0.91293 0.90795 0.85088 0.85016 0.90988 0.93220 0.89956 0.84834 0.97681 0.95144 0.88802 0.93044 0.84209 0.90777 0.91133 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.59 36.01 0.35 -0.25 16 2 C -0.07 -0.53 5.89 -104.54 -0.62 -1.15 16 3 C -0.12 -0.98 9.68 -39.64 -0.38 -1.36 16 4 C -0.09 -0.92 9.73 -39.19 -0.38 -1.30 16 5 C -0.02 -0.21 5.87 -104.98 -0.62 -0.83 16 6 C 0.19 2.96 7.99 -13.87 -0.11 2.85 16 7 N -0.27 -4.89 11.92 32.07 0.38 -4.50 16 8 N -0.26 -5.06 12.21 32.58 0.40 -4.66 16 9 C 0.18 3.21 6.96 -12.89 -0.09 3.12 16 10 C 0.18 3.28 2.97 -68.86 -0.20 3.08 16 11 H 0.07 1.19 7.11 -51.93 -0.37 0.82 16 12 C -0.13 -2.19 9.38 37.16 0.35 -1.84 16 13 N -0.66 -14.10 6.03 -102.17 -0.62 -14.72 16 14 C 0.21 5.12 2.38 -68.86 -0.16 4.95 16 15 H 0.04 1.05 7.11 -51.93 -0.37 0.68 16 16 C -0.17 -4.07 8.92 37.16 0.33 -3.74 16 17 C -0.49 -13.40 8.84 -34.44 -0.30 -13.70 16 18 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 19 C 0.06 1.51 5.30 -17.82 -0.09 1.41 16 20 N -0.90 -25.10 11.32 55.43 0.63 -24.48 16 21 Si 0.90 21.39 29.54 -169.99 -5.02 16.36 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 O -0.22 -3.69 10.67 4.03 0.04 -3.65 16 26 C -0.07 -0.71 9.35 -39.19 -0.37 -1.08 16 27 C -0.09 -0.77 5.87 -104.68 -0.61 -1.38 16 28 C -0.12 -0.70 9.60 36.01 0.35 -0.35 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.07 0.29 5.92 -51.93 -0.31 -0.01 16 32 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.13 1.29 7.94 -52.49 -0.42 0.88 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.41 7.43 -51.93 -0.39 1.02 16 37 H 0.33 7.16 8.09 -39.29 -0.32 6.84 16 38 H 0.00 0.09 7.43 -51.93 -0.39 -0.30 16 39 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 40 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 41 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.14 1.50 7.87 -52.48 -0.41 1.09 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 45 H 0.07 0.32 5.92 -51.93 -0.31 0.02 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -30.07 373.27 -7.64 -37.72 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.51 Total: 3.88 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -2.57 Total: -11.58 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.79 Total: -48.36 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: 0.04 Total: -3.65 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.07 -7.64 -37.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.170 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds