Wall clock time and date at job start Tue Mar 31 2020 10:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38374 * 119.85813 * 2 1 4 4 C 1.37945 * 120.14799 * 180.29763 * 3 2 1 5 5 C 1.39583 * 119.84924 * 359.72161 * 4 3 2 6 6 C 1.47856 * 120.13982 * 179.97438 * 5 4 3 7 7 N 1.31235 * 126.37742 * 179.70778 * 6 5 4 8 8 N 1.28666 * 109.24528 * 179.88689 * 7 6 5 9 9 C 1.30387 * 109.52505 * 0.39047 * 8 7 6 10 10 C 1.50701 * 126.18509 * 179.74556 * 9 8 7 11 11 H 1.08996 * 109.46809 * 195.01858 * 10 9 8 12 12 C 1.53006 * 109.47067 * 75.01914 * 10 9 8 13 13 N 1.46899 * 109.46941 * 315.02470 * 10 9 8 14 14 C 1.46899 * 110.99607 * 205.00175 * 13 10 9 15 15 H 1.08996 * 109.47521 * 324.99620 * 14 13 10 16 16 C 1.53005 * 109.47170 * 84.99577 * 14 13 10 17 17 C 1.50701 * 109.46930 * 204.99324 * 14 13 10 18 18 H 1.07996 * 119.99904 * 0.02562 * 17 14 13 19 19 C 1.37877 * 119.99859 * 179.97438 * 17 14 13 20 20 N 1.31511 * 120.00317 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 119.99996 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47068 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47062 * 120.00295 * 21 19 17 24 24 H 1.48498 * 109.47139 * 240.00151 * 21 19 17 25 25 O 1.34411 * 107.62887 * 359.75915 * 9 8 7 26 26 C 1.39534 * 119.71776 * 0.02562 * 5 4 3 27 27 C 1.37988 * 119.85240 * 0.02562 * 26 5 4 28 28 C 1.50703 * 119.92718 * 179.97438 * 27 26 5 29 29 H 1.09002 * 109.46641 * 270.25223 * 1 2 3 30 30 H 1.08998 * 109.46888 * 30.25264 * 1 2 3 31 31 H 1.09000 * 109.47212 * 150.25689 * 1 2 3 32 32 H 1.07998 * 119.92608 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.07708 * 179.74324 * 4 3 2 34 34 H 1.08999 * 109.47157 * 300.00186 * 12 10 9 35 35 H 1.09004 * 109.46946 * 59.99961 * 12 10 9 36 36 H 1.08998 * 109.46572 * 179.97438 * 12 10 9 37 37 H 1.00909 * 110.99918 * 328.95058 * 13 10 9 38 38 H 1.08993 * 109.47458 * 299.99747 * 16 14 13 39 39 H 1.09003 * 109.47153 * 60.00263 * 16 14 13 40 40 H 1.09005 * 109.46970 * 179.97438 * 16 14 13 41 41 H 0.97000 * 120.00388 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.07361 * 179.97438 * 26 5 4 43 43 H 1.09002 * 109.47152 * 89.99950 * 28 27 26 44 44 H 1.09001 * 109.46980 * 330.00051 * 28 27 26 45 45 H 1.09004 * 109.47113 * 210.00032 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5753 1.2070 -0.0062 5 6 4.2762 -0.0001 -0.0066 6 6 5.7547 -0.0001 -0.0138 7 7 6.5331 -1.0567 -0.0096 8 7 7.7626 -0.6777 -0.0208 9 6 7.8171 0.6250 -0.0242 10 6 9.0695 1.4632 -0.0313 11 1 8.8204 2.4907 0.2335 12 6 9.6951 1.4335 -1.4273 13 7 10.0252 0.9236 0.9451 14 6 10.9512 1.9664 1.4068 15 1 11.1681 2.6494 0.5855 16 6 10.3115 2.7423 2.5600 17 6 12.2314 1.3276 1.8803 18 1 12.3457 0.2544 1.8417 19 6 13.2569 2.1133 2.3619 20 7 13.1178 3.4202 2.4084 21 14 14.8440 1.3215 2.9482 22 1 14.7491 -0.1522 2.7920 23 1 15.9801 1.8324 2.1397 24 1 15.0647 1.6551 4.3783 25 8 6.5542 1.0853 -0.0199 26 6 3.5755 -1.2067 -0.0013 27 6 2.1957 -1.1997 0.0038 28 6 1.4372 -2.5020 0.0090 29 1 -0.3633 0.0045 1.0277 30 1 -0.3633 0.8877 -0.5177 31 1 -0.3634 -0.8923 -0.5098 32 1 1.6524 2.1333 0.0004 33 1 4.1118 2.1443 -0.0104 34 1 9.9441 0.4059 -1.6921 35 1 8.9859 1.8338 -2.1518 36 1 10.6007 2.0401 -1.4324 37 1 9.5451 0.4962 1.7229 38 1 9.3857 3.2044 2.2176 39 1 10.0947 2.0594 3.3814 40 1 10.9988 3.5158 2.9028 41 1 13.8391 3.9730 2.7476 42 1 4.1120 -2.1441 -0.0019 43 1 1.2582 -2.8141 1.0380 44 1 2.0215 -3.2648 -0.5056 45 1 0.4834 -2.3690 -0.5015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602860420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:32 Heat of formation + Delta-G solvation = 34.545267 kcal Electronic energy + Delta-G solvation = -25229.685948 eV Core-core repulsion = 21633.868453 eV Total energy + Delta-G solvation = -3595.817495 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.33617 -40.63510 -38.64303 -37.36971 -35.54660 -34.87727 -33.39261 -32.77595 -31.02864 -28.90457 -28.50986 -27.66590 -27.26707 -25.66140 -24.61574 -23.18513 -22.69116 -21.71714 -21.51898 -18.99806 -18.52666 -18.28401 -17.46845 -17.04375 -16.69608 -16.49380 -16.24742 -15.69814 -15.23058 -14.91262 -14.69389 -14.62733 -14.17362 -13.79267 -13.65692 -13.63668 -13.56828 -13.53175 -13.21382 -13.08997 -13.06657 -12.95851 -12.84808 -12.81045 -12.62986 -12.43805 -12.29875 -12.14871 -12.00798 -11.92548 -11.85800 -11.18346 -11.00581 -10.48859 -9.86590 -9.42838 -9.21130 -8.11158 -6.20590 -0.67571 0.28486 0.49361 0.92490 1.29948 1.42510 1.45220 1.57412 2.44180 2.55393 2.62597 3.11807 3.18437 3.36587 3.72323 3.81299 3.85100 3.91935 4.02065 4.10738 4.15666 4.19325 4.35598 4.36845 4.61591 4.64024 4.72936 4.74217 4.76959 4.79378 4.82515 4.82581 4.93425 4.96540 5.04050 5.18786 5.22863 5.27778 5.30721 5.33134 5.35319 5.59365 5.67010 5.76604 5.88237 6.19931 6.48710 6.55842 6.90512 7.10774 7.48271 8.94910 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.030023 B = 0.002322 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.380260 B =12057.151375 C =12268.082832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.058 4.058 3 C -0.117 4.117 4 C -0.092 4.092 5 C -0.053 4.053 6 C 0.207 3.793 7 N -0.305 5.305 8 N -0.286 5.286 9 C 0.172 3.828 10 C 0.184 3.816 11 H 0.075 0.925 12 C -0.126 4.126 13 N -0.666 5.666 14 C 0.218 3.782 15 H 0.025 0.975 16 C -0.162 4.162 17 C -0.512 4.512 18 H 0.053 0.947 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.959 3.041 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.281 1.281 25 O -0.223 6.223 26 C -0.074 4.074 27 C -0.093 4.093 28 C -0.117 4.117 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.160 0.840 33 H 0.134 0.866 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.331 0.669 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.069 0.931 41 H 0.262 0.738 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.567 -4.054 -6.421 29.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.059 4.059 3 C -0.134 4.134 4 C -0.112 4.112 5 C -0.055 4.055 6 C 0.000 4.000 7 N -0.152 5.152 8 N -0.132 5.132 9 C -0.040 4.040 10 C 0.072 3.928 11 H 0.092 0.908 12 C -0.185 4.185 13 N -0.299 5.299 14 C 0.110 3.890 15 H 0.043 0.957 16 C -0.221 4.221 17 C -0.551 4.551 18 H 0.071 0.929 19 C -0.186 4.186 20 N -0.559 5.559 21 Si 0.785 3.215 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.207 1.207 25 O -0.102 6.102 26 C -0.094 4.094 27 C -0.093 4.093 28 C -0.173 4.173 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.178 0.822 33 H 0.152 0.848 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.149 0.851 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.150 0.850 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -27.614 -5.394 -6.861 28.961 hybrid contribution 0.674 1.537 1.099 2.006 sum -26.941 -3.858 -5.762 27.819 Atomic orbital electron populations 1.21036 0.88191 1.04628 1.03857 1.20450 0.98256 0.91886 0.95316 1.21289 0.92468 0.99505 1.00183 1.21396 0.95627 0.96328 0.97825 1.17392 0.81462 0.96653 1.09959 1.26109 0.95341 0.79517 0.99058 1.74689 0.96018 1.25610 1.18917 1.74421 1.11933 1.09837 1.17020 1.28393 0.84972 0.91637 0.98990 1.20113 0.81442 0.93478 0.97726 0.90770 1.21769 1.01212 1.03373 0.92112 1.60963 1.17943 1.32981 1.18007 1.19093 0.89633 0.87945 0.92298 0.95743 1.22316 0.98440 1.01477 0.99885 1.21368 0.99277 0.93579 1.40876 0.92900 1.25629 1.01537 0.95367 0.96046 1.69979 1.33630 1.04481 1.47792 0.85491 0.79618 0.78653 0.77745 1.19714 1.20555 1.20701 1.84831 1.17357 1.37850 1.70162 1.21137 0.94447 0.96373 0.97400 1.20002 0.92025 0.97194 1.00076 1.20959 1.00564 0.92197 1.03626 0.89482 0.89887 0.89493 0.82240 0.84804 0.91949 0.90409 0.90791 0.85113 0.95428 0.95360 0.91176 0.92879 0.85041 0.89914 0.91200 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 9.59 71.24 0.68 0.01 16 2 C -0.06 -0.73 5.89 -19.81 -0.12 -0.85 16 3 C -0.12 -1.62 9.68 22.23 0.22 -1.40 16 4 C -0.09 -1.82 9.73 22.52 0.22 -1.60 16 5 C -0.05 -1.31 5.87 -20.09 -0.12 -1.43 16 6 C 0.21 6.65 7.99 87.33 0.70 7.35 16 7 N -0.31 -11.21 11.92 -166.30 -1.98 -13.19 16 8 N -0.29 -11.33 12.21 -165.33 -2.02 -13.35 16 9 C 0.17 6.25 6.96 88.32 0.61 6.87 16 10 C 0.18 6.73 2.97 44.17 0.13 6.87 16 11 H 0.07 2.62 7.11 -2.39 -0.02 2.60 16 12 C -0.13 -4.18 9.38 71.98 0.68 -3.50 16 13 N -0.67 -29.02 6.03 -477.15 -2.88 -31.89 16 14 C 0.22 10.78 2.38 44.17 0.11 10.88 16 15 H 0.02 1.29 7.11 -2.39 -0.02 1.28 16 16 C -0.16 -7.66 8.92 71.98 0.64 -7.02 16 17 C -0.51 -28.34 8.84 25.60 0.23 -28.11 16 18 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 19 C 0.01 0.70 5.30 84.66 0.45 1.15 16 20 N -0.92 -51.79 11.32 21.45 0.24 -51.55 16 21 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 O -0.22 -7.43 10.67 -8.51 -0.09 -7.52 16 26 C -0.07 -1.58 9.35 22.52 0.21 -1.37 16 27 C -0.09 -1.41 5.87 -19.90 -0.12 -1.53 16 28 C -0.12 -1.10 9.60 71.24 0.68 -0.41 16 29 H 0.09 0.36 8.14 -2.39 -0.02 0.35 16 30 H 0.08 0.29 8.08 -2.39 -0.02 0.27 16 31 H 0.09 0.30 5.92 -2.39 -0.01 0.28 16 32 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 33 H 0.13 2.49 7.94 -2.91 -0.02 2.47 16 34 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.07 2.56 7.43 -2.39 -0.02 2.54 16 37 H 0.33 14.56 8.09 -89.69 -0.73 13.83 16 38 H 0.03 1.13 7.43 -2.39 -0.02 1.12 16 39 H 0.03 1.30 8.13 -2.39 -0.02 1.28 16 40 H 0.07 3.68 6.07 -2.38 -0.01 3.66 16 41 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.13 2.93 7.87 -2.91 -0.02 2.90 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.68 8.08 -2.39 -0.02 0.66 16 45 H 0.09 0.49 5.92 -2.38 -0.01 0.47 16 Total: -1.00 -65.72 373.27 0.79 -64.94 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.28 Total: 20.49 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 5.20 Total: -14.11 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -6.63 Total: -109.98 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.09 Total: -7.52 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -65.72 0.79 -64.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.481 kcal (2) G-P(sol) polarization free energy of solvation -65.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds