Wall clock time and date at job start Tue Mar 31 2020 11:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35316 * 126.12919 * 2 1 4 4 C 1.39866 * 107.91952 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.89549 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.46958 * 95.00207 * 5 4 3 7 7 C 1.46896 * 111.00195 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38255 * 120.11174 * 179.97438 * 9 8 7 11 11 C 1.38163 * 120.05063 * 359.76900 * 10 9 8 12 12 C 1.38710 * 119.94702 * 0.48231 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.76528 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 N 1.30830 * 108.20603 * 0.26396 * 4 3 2 26 26 N 1.34950 * 126.12650 * 180.02562 * 2 1 3 27 27 H 0.97005 * 126.03869 * 359.96029 * 26 2 1 28 28 H 1.08997 * 109.47552 * 89.99719 * 1 2 3 29 29 H 1.09001 * 109.47079 * 210.00663 * 1 2 3 30 30 H 1.09004 * 109.46550 * 329.99730 * 1 2 3 31 31 H 1.08001 * 126.03509 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.47105 * 334.99914 * 5 4 3 33 33 H 1.09006 * 109.46860 * 215.00109 * 5 4 3 34 34 H 1.00903 * 110.99490 * 56.04413 * 6 5 4 35 35 H 1.09005 * 109.46944 * 59.99947 * 7 6 5 36 36 H 1.09002 * 109.47398 * 300.00389 * 7 6 5 37 37 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 38 38 H 1.07991 * 119.97457 * 180.02562 * 10 9 8 39 39 H 1.08006 * 120.02763 * 180.24929 * 11 10 9 40 40 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 41 41 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 42 42 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 43 43 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 44 44 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 45 45 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0006 5 6 4.8543 1.5395 -0.0013 6 7 5.3225 1.7289 1.3781 7 6 6.5144 2.5866 1.4165 8 6 6.9641 2.7583 2.8445 9 6 6.4706 3.8037 3.6032 10 6 6.8808 3.9636 4.9138 11 6 7.7816 3.0758 5.4701 12 6 8.2820 2.0294 4.7095 13 8 9.1717 1.1577 5.2529 14 6 9.5527 1.3822 6.6118 15 6 10.5521 0.3080 7.0455 16 6 10.9534 0.5444 8.4787 17 1 10.5369 1.3773 9.0257 18 6 11.8514 -0.3031 9.0920 19 7 12.2013 -0.0971 10.3429 20 14 12.5703 -1.7450 8.1465 21 1 13.8188 -1.3173 7.4656 22 1 12.8744 -2.8522 9.0882 23 1 11.5892 -2.2115 7.1341 24 6 7.8685 1.8708 3.3946 25 7 3.6334 -0.6524 -0.0067 26 7 2.3026 -1.0900 -0.0005 27 1 2.0055 -2.0134 -0.0004 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3632 0.8900 0.5139 31 1 1.9740 2.1210 0.0004 32 1 4.6024 2.5069 -0.4357 33 1 5.6419 1.0704 -0.5912 34 1 5.5012 0.8417 1.8243 35 1 6.2744 3.5614 0.9918 36 1 7.3134 2.1245 0.8366 37 1 5.7630 4.4961 3.1716 38 1 6.4937 4.7806 5.5044 39 1 8.0987 3.1988 6.4952 40 1 10.0138 2.3657 6.7021 41 1 8.6697 1.3350 7.2492 42 1 10.0906 -0.6753 6.9552 43 1 11.4351 0.3547 6.4082 44 1 12.8333 -0.6932 10.7742 45 1 8.2535 1.0545 2.8015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610009899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:54 Heat of formation + Delta-G solvation = 25.915190 kcal Electronic energy + Delta-G solvation = -24090.798886 eV Core-core repulsion = 20494.607162 eV Total energy + Delta-G solvation = -3596.191724 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.16111 -41.08461 -38.92492 -36.97449 -35.43024 -33.81213 -32.93943 -32.54918 -31.55217 -30.66753 -27.95211 -27.74545 -27.02143 -25.00612 -23.40225 -23.04088 -21.58961 -21.49805 -20.78673 -19.33587 -18.46075 -18.26484 -17.06532 -17.00460 -16.86373 -16.45950 -16.24754 -16.05300 -15.63972 -15.34489 -14.93226 -14.78823 -14.57169 -14.40244 -14.28817 -14.01228 -13.65579 -13.54990 -13.23709 -13.16103 -13.04475 -12.95528 -12.67870 -12.50659 -12.45609 -12.10437 -11.94889 -11.75136 -11.56910 -11.53237 -11.41991 -10.83730 -10.42225 -9.84809 -9.51676 -9.38308 -9.09155 -8.37078 -6.43880 0.33375 0.55228 0.91689 1.33803 1.35325 1.48130 1.75858 1.98137 2.31045 2.32609 2.79595 2.97648 3.47263 3.73044 3.80846 3.86217 3.91727 4.16001 4.19420 4.19843 4.21824 4.34855 4.44010 4.48680 4.54806 4.58416 4.64029 4.71741 4.76878 4.80307 4.85885 4.91093 5.07805 5.12639 5.14054 5.27134 5.27561 5.42060 5.48003 5.55388 5.66114 5.68798 5.88926 6.00246 6.14107 6.24301 6.45664 6.52945 6.61494 6.73449 7.21259 8.78580 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016057 B = 0.002059 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.409641 B =13596.577574 C =14523.144362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.087 3.913 3 C -0.276 4.276 4 C 0.071 3.929 5 C 0.142 3.858 6 N -0.682 5.682 7 C 0.107 3.893 8 C -0.046 4.046 9 C -0.136 4.136 10 C -0.082 4.082 11 C -0.224 4.224 12 C 0.106 3.894 13 O -0.338 6.338 14 C 0.088 3.912 15 C -0.006 4.006 16 C -0.538 4.538 17 H 0.042 0.958 18 C 0.014 3.986 19 N -0.941 5.941 20 Si 0.948 3.052 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.253 1.253 24 C -0.162 4.162 25 N -0.334 5.334 26 N -0.475 5.475 27 H 0.446 0.554 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.162 0.838 32 H 0.114 0.886 33 H 0.045 0.955 34 H 0.338 0.662 35 H 0.108 0.892 36 H 0.047 0.953 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.122 0.878 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.026 0.974 43 H 0.027 0.973 44 H 0.270 0.730 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.516 5.251 -26.441 36.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.042 4.042 3 C -0.305 4.305 4 C -0.095 4.095 5 C 0.012 3.988 6 N -0.313 5.313 7 C -0.021 4.021 8 C -0.047 4.047 9 C -0.155 4.155 10 C -0.099 4.099 11 C -0.243 4.243 12 C 0.061 3.939 13 O -0.252 6.252 14 C 0.013 3.987 15 C -0.044 4.044 16 C -0.576 4.576 17 H 0.061 0.939 18 C -0.184 4.184 19 N -0.580 5.580 20 Si 0.771 3.229 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.177 1.177 24 C -0.181 4.181 25 N -0.158 5.158 26 N -0.186 5.186 27 H 0.292 0.708 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.179 0.821 32 H 0.132 0.868 33 H 0.063 0.937 34 H 0.155 0.845 35 H 0.126 0.874 36 H 0.065 0.935 37 H 0.169 0.831 38 H 0.166 0.834 39 H 0.140 0.860 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -24.029 4.509 -26.278 35.893 hybrid contribution 0.822 -1.084 0.411 1.421 sum -23.207 3.425 -25.867 34.920 Atomic orbital electron populations 1.20597 0.84396 1.05199 1.04659 1.21754 0.96303 0.87079 0.99038 1.21426 0.91200 1.00367 1.17510 1.22425 0.96843 0.91201 0.99040 1.20308 0.90850 0.97992 0.89665 1.60540 1.34063 1.20011 1.16674 1.20894 0.90749 0.99465 0.91021 1.19684 0.94435 0.94034 0.96499 1.21201 1.01288 0.99180 0.93802 1.21250 0.94923 0.97931 0.95835 1.21501 1.03668 0.98107 1.01019 1.19422 0.90604 0.90128 0.93791 1.86022 1.58250 1.51208 1.29749 1.22647 0.97824 0.99771 0.78460 1.19443 0.94773 0.95221 0.94932 1.21105 1.26478 1.13600 0.96372 0.93944 1.25871 0.96215 1.00627 0.95694 1.70021 1.34667 1.40027 1.13320 0.85685 0.79569 0.78674 0.78942 1.18851 1.20308 1.17661 1.20456 1.02360 1.02578 0.92730 1.77223 0.98270 1.13569 1.26765 1.46342 1.03426 1.09190 1.59593 0.70825 0.88627 0.89827 0.88461 0.82086 0.86805 0.93676 0.84497 0.87364 0.93474 0.83087 0.83420 0.86013 0.92397 0.92623 0.95580 0.95505 0.92052 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 10.43 71.24 0.74 0.32 16 2 C 0.09 1.16 7.21 41.41 0.30 1.46 16 3 C -0.28 -4.44 10.65 21.99 0.23 -4.20 16 4 C 0.07 1.39 6.73 43.10 0.29 1.68 16 5 C 0.14 2.24 6.25 85.56 0.53 2.77 16 6 N -0.68 -12.53 6.48 -521.98 -3.38 -15.91 16 7 C 0.11 1.78 5.81 85.56 0.50 2.28 16 8 C -0.05 -1.04 5.39 -19.88 -0.11 -1.15 16 9 C -0.14 -2.90 9.70 22.28 0.22 -2.68 16 10 C -0.08 -1.97 10.04 22.26 0.22 -1.75 16 11 C -0.22 -6.97 9.04 22.36 0.20 -6.77 16 12 C 0.11 3.66 6.69 22.50 0.15 3.81 16 13 O -0.34 -13.77 10.14 -92.43 -0.94 -14.70 16 14 C 0.09 3.77 4.68 71.98 0.34 4.11 16 15 C -0.01 -0.31 4.41 29.85 0.13 -0.18 16 16 C -0.54 -31.44 9.66 25.60 0.25 -31.20 16 17 H 0.04 2.67 7.99 -2.91 -0.02 2.65 16 18 C 0.01 0.84 5.47 84.65 0.46 1.30 16 19 N -0.94 -58.71 13.96 21.45 0.30 -58.41 16 20 Si 0.95 44.96 27.47 68.60 1.88 46.84 16 21 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 24 C -0.16 -4.70 9.64 22.37 0.22 -4.48 16 25 N -0.33 -7.44 12.70 -47.38 -0.60 -8.04 16 26 N -0.48 -7.54 7.36 -48.00 -0.35 -7.90 16 27 H 0.45 4.48 8.96 -213.32 -1.91 2.57 16 28 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.34 7.47 8.71 -89.69 -0.78 6.69 16 35 H 0.11 1.32 8.08 -2.38 -0.02 1.30 16 36 H 0.05 0.76 8.09 -2.39 -0.02 0.74 16 37 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.15 2.73 8.06 -2.92 -0.02 2.71 16 39 H 0.12 3.89 6.30 -2.91 -0.02 3.87 16 40 H 0.06 2.43 7.67 -2.39 -0.02 2.41 16 41 H 0.06 2.35 7.65 -2.39 -0.02 2.34 16 42 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 43 H 0.03 1.30 7.57 -2.39 -0.02 1.29 16 44 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 45 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -73.73 380.12 -0.16 -73.89 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -1.74 Total: 18.91 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 4.68 Total: -34.68 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -4.04 Total: -90.25 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.94 Total: -14.70 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -73.73 -0.16 -73.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610009899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.803 kcal (2) G-P(sol) polarization free energy of solvation -73.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds