Wall clock time and date at job start Tue Mar 31 2020 11:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 110.85245 * 2 1 4 4 C 1.38225 * 119.62127 * 47.34412 * 3 2 1 5 5 C 1.38626 * 119.16338 * 180.02562 * 4 3 2 6 6 C 1.38671 * 118.42264 * 359.97438 * 5 4 3 7 7 C 1.38190 * 119.15938 * 359.97438 * 6 5 4 8 8 N 1.31859 * 119.61828 * 227.33383 * 3 2 1 9 9 C 1.54627 * 110.96912 * 123.79195 * 2 1 3 10 10 C 1.51274 * 104.19639 * 93.35816 * 9 2 1 11 11 O 1.21283 * 124.94270 * 196.21526 * 10 9 2 12 12 N 1.34423 * 110.11416 * 16.24985 * 10 9 2 13 13 C 1.46502 * 124.34716 * 180.38568 * 12 10 9 14 14 N 1.46495 * 109.47194 * 89.97735 * 13 12 10 15 15 C 1.36942 * 120.00089 * 270.00004 * 14 13 12 16 16 H 1.07996 * 119.99588 * 144.05285 * 15 14 13 17 17 C 1.38813 * 119.99782 * 324.04908 * 15 14 13 18 18 N 1.31625 * 120.00079 * 339.15475 * 17 15 14 19 19 Si 1.86797 * 119.99813 * 159.15486 * 17 15 14 20 20 H 1.48497 * 109.47019 * 60.00535 * 19 17 15 21 21 H 1.48498 * 109.46895 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47256 * 299.99923 * 19 17 15 23 23 C 1.46497 * 120.00196 * 89.99756 * 14 13 12 24 24 C 1.53004 * 117.50180 * 183.24833 * 23 14 13 25 25 C 1.53002 * 117.50361 * 114.58662 * 23 14 13 26 26 C 1.46761 * 111.30104 * 0.41019 * 12 10 9 27 27 H 1.08998 * 109.47188 * 60.69775 * 1 2 3 28 28 H 1.09000 * 109.46874 * 180.70285 * 1 2 3 29 29 H 1.09005 * 109.47005 * 300.69694 * 1 2 3 30 30 H 1.08001 * 120.41759 * 0.02562 * 4 3 2 31 31 H 1.08003 * 120.79023 * 180.24494 * 5 4 3 32 32 H 1.07993 * 120.41850 * 179.97438 * 6 5 4 33 33 H 1.08000 * 119.61232 * 179.97438 * 7 6 5 34 34 H 1.09000 * 110.48242 * 212.03803 * 9 2 1 35 35 H 1.09004 * 110.48682 * 334.67545 * 9 2 1 36 36 H 1.09007 * 109.46738 * 209.97788 * 13 12 10 37 37 H 1.08999 * 109.47159 * 329.97646 * 13 12 10 38 38 H 0.96997 * 119.99976 * 175.48430 * 18 17 15 39 39 H 1.09003 * 115.55081 * 328.92248 * 23 14 13 40 40 H 1.08994 * 117.49474 * 359.97438 * 24 23 14 41 41 H 1.09000 * 117.49376 * 145.02057 * 24 23 14 42 42 H 1.08990 * 117.50336 * 214.98477 * 25 23 14 43 43 H 1.09004 * 117.49412 * 359.97438 * 25 23 14 44 44 H 1.09002 * 110.24154 * 223.98067 * 26 12 10 45 45 H 1.09001 * 110.24950 * 101.98561 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0665 1.4083 0.0000 4 6 1.5488 2.3366 0.8837 5 6 2.0489 3.6295 0.8752 6 6 3.0559 3.9417 -0.0256 7 6 3.5246 2.9605 -0.8783 8 7 3.0245 1.7407 -0.8429 9 6 2.0834 -0.8030 1.1999 10 6 2.2964 -2.1953 0.6480 11 8 2.4538 -3.1925 1.3202 12 7 2.2866 -2.1664 -0.6959 13 6 2.4571 -3.3449 -1.5493 14 7 1.1476 -3.9398 -1.8277 15 6 0.6409 -4.9007 -0.9938 16 1 -0.4200 -4.9382 -0.7951 17 6 1.4908 -5.8264 -0.4043 18 7 2.6748 -6.0606 -0.9293 19 14 0.9540 -6.7398 1.1342 20 1 -0.2774 -7.5173 0.8439 21 1 2.0336 -7.6651 1.5624 22 1 0.6790 -5.7635 2.2189 23 6 0.3802 -3.5068 -2.9980 24 6 -1.0124 -4.1100 -3.1924 25 6 0.1404 -4.5348 -4.1055 26 6 2.0837 -0.8024 -1.1983 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3633 0.5246 0.8837 30 1 0.7646 2.0581 1.5721 31 1 1.6664 4.3747 1.5569 32 1 3.4687 4.9390 -0.0601 33 1 4.3084 3.1958 -1.5831 34 1 3.0282 -0.3787 1.5398 35 1 1.3581 -0.8219 2.0134 36 1 2.9287 -3.0495 -2.4866 37 1 3.0867 -4.0744 -1.0398 38 1 3.2943 -6.6579 -0.4817 39 1 0.5254 -2.4689 -3.2977 40 1 -1.3574 -4.8293 -2.4497 41 1 -1.7832 -3.4690 -3.6203 42 1 0.1275 -4.1733 -5.1336 43 1 0.5540 -5.5333 -3.9635 44 1 1.3628 -0.8051 -2.0159 45 1 3.0310 -0.3782 -1.5310 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758195494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:22 Heat of formation + Delta-G solvation = 64.189040 kcal Electronic energy + Delta-G solvation = -27264.818340 eV Core-core repulsion = 23670.286295 eV Total energy + Delta-G solvation = -3594.532045 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.82360 -39.25905 -36.87386 -36.02918 -33.94921 -32.64367 -32.61957 -30.61425 -29.65874 -28.01606 -26.35373 -25.15734 -23.86085 -23.37457 -22.76901 -21.36991 -20.06854 -19.69977 -18.64269 -17.19214 -16.47335 -16.23444 -15.69024 -15.54937 -15.36798 -15.02155 -14.46311 -14.28575 -14.15677 -13.68514 -13.65314 -13.44552 -13.21814 -12.75546 -12.59583 -12.29742 -12.14151 -11.98946 -11.67666 -11.38649 -11.05130 -10.94172 -10.87956 -10.79478 -10.56867 -10.37239 -10.25359 -10.03290 -9.87745 -9.61907 -9.50631 -9.34887 -9.19552 -8.75678 -8.32668 -7.75379 -6.62418 -5.77442 -3.35499 0.95164 1.13035 3.43914 3.55596 3.56891 3.65493 3.66145 4.02605 4.08502 4.46614 4.61583 4.66711 4.77647 4.89457 4.94500 4.95180 5.02924 5.06869 5.32263 5.36614 5.48064 5.54375 5.56218 5.71478 5.84297 5.85835 5.93227 5.97241 6.01787 6.06287 6.11066 6.16086 6.24077 6.26237 6.38695 6.43907 6.49189 6.56628 6.63497 7.03783 7.22482 7.43597 7.65499 7.88063 7.88820 8.23099 8.54133 9.17946 9.23068 9.82312 10.33237 11.24764 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017117 B = 0.004352 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.396512 B = 6432.074047 C = 7182.890393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.028 4.028 3 C 0.155 3.845 4 C -0.165 4.165 5 C -0.075 4.075 6 C -0.183 4.183 7 C 0.102 3.898 8 N -0.477 5.477 9 C -0.143 4.143 10 C 0.517 3.483 11 O -0.519 6.519 12 N -0.615 5.615 13 C 0.357 3.643 14 N -0.540 5.540 15 C -0.268 4.268 16 H 0.061 0.939 17 C 0.038 3.962 18 N -0.886 5.886 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.276 1.276 23 C 0.116 3.884 24 C -0.194 4.194 25 C -0.217 4.217 26 C 0.115 3.885 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.155 0.845 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.129 0.871 38 H 0.257 0.743 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 20.427 0.202 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 C 0.017 3.983 4 C -0.185 4.185 5 C -0.101 4.101 6 C -0.203 4.203 7 C -0.055 4.055 8 N -0.185 5.185 9 C -0.184 4.184 10 C 0.301 3.699 11 O -0.394 6.394 12 N -0.354 5.354 13 C 0.151 3.849 14 N -0.258 5.258 15 C -0.397 4.397 16 H 0.079 0.921 17 C -0.163 4.163 18 N -0.527 5.527 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.202 1.202 23 C 0.007 3.993 24 C -0.233 4.233 25 C -0.258 4.258 26 C -0.009 4.009 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.172 0.828 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.146 0.854 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.085 0.915 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.488 18.974 -0.066 18.980 hybrid contribution -0.666 0.490 1.290 1.533 sum -1.155 19.464 1.224 19.537 Atomic orbital electron populations 1.21829 0.91849 1.03603 1.01714 1.20357 0.96210 0.89086 0.97284 1.20928 0.91392 0.95133 0.90809 1.21936 1.01945 0.93851 1.00787 1.21567 0.95023 0.96332 0.97141 1.22118 0.99016 1.01129 0.98069 1.22780 0.97682 0.88195 0.96799 1.67466 1.09890 1.19669 1.21496 1.22525 1.02700 0.95510 0.97659 1.20434 0.76723 0.89263 0.83463 1.90729 1.49423 1.36589 1.62634 1.50163 1.70313 1.08034 1.06866 1.21351 0.88367 0.83557 0.91645 1.43954 1.18654 1.40629 1.22518 1.18832 0.93262 1.05894 1.21667 0.92142 1.24971 0.96964 0.95468 0.98894 1.69883 1.08759 1.37148 1.36916 0.86390 0.77159 0.78817 0.84455 1.21359 1.21749 1.20159 1.21282 0.94544 0.93352 0.90103 1.23023 0.91672 1.04846 1.03726 1.23336 1.04736 1.03067 0.94649 1.22023 1.01203 0.82809 0.94912 0.92179 0.90565 0.92285 0.84665 0.84985 0.85036 0.82778 0.89082 0.88705 0.93424 0.85355 0.93330 0.89806 0.88433 0.90912 0.91224 0.88881 0.91548 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.14 37.16 0.30 -1.37 16 2 C -0.03 -0.39 0.82 -154.03 -0.13 -0.51 16 3 C 0.16 1.91 5.55 -82.58 -0.46 1.45 16 4 C -0.17 -1.64 9.23 -39.44 -0.36 -2.01 16 5 C -0.07 -0.62 10.18 -39.28 -0.40 -1.02 16 6 C -0.18 -1.48 10.11 -39.44 -0.40 -1.88 16 7 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16 8 N -0.48 -6.05 8.49 -9.47 -0.08 -6.13 16 9 C -0.14 -2.25 5.94 -26.75 -0.16 -2.41 16 10 C 0.52 11.14 8.02 -10.86 -0.09 11.05 16 11 O -0.52 -13.74 17.59 5.56 0.10 -13.64 16 12 N -0.61 -12.60 3.17 -176.13 -0.56 -13.16 16 13 C 0.36 8.42 6.13 -63.75 -0.39 8.03 16 14 N -0.54 -13.20 3.01 -169.34 -0.51 -13.71 16 15 C -0.27 -7.35 8.60 -15.06 -0.13 -7.47 16 16 H 0.06 1.69 6.58 -52.49 -0.35 1.34 16 17 C 0.04 1.09 4.99 -17.43 -0.09 1.01 16 18 N -0.89 -25.92 11.31 55.49 0.63 -25.29 16 19 Si 0.90 23.56 29.61 -169.99 -5.03 18.52 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 22 H -0.28 -7.46 7.11 56.52 0.40 -7.05 16 23 C 0.12 2.43 6.56 -67.93 -0.45 1.99 16 24 C -0.19 -3.82 9.80 -26.69 -0.26 -4.08 16 25 C -0.22 -4.36 10.36 -26.69 -0.28 -4.64 16 26 C 0.12 1.87 6.31 -3.13 -0.02 1.85 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.61 6.88 -51.93 -0.36 0.25 16 30 H 0.14 1.13 6.93 -52.49 -0.36 0.77 16 31 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 32 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.09 1.36 7.89 -51.93 -0.41 0.95 16 35 H 0.09 1.38 7.91 -51.93 -0.41 0.97 16 36 H 0.05 1.05 8.07 -51.93 -0.42 0.63 16 37 H 0.13 3.56 5.15 -51.93 -0.27 3.30 16 38 H 0.26 7.41 8.32 -40.82 -0.34 7.07 16 39 H 0.08 1.58 7.62 -51.93 -0.40 1.19 16 40 H 0.10 2.12 6.39 -51.93 -0.33 1.79 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 44 H 0.07 1.06 7.38 -51.93 -0.38 0.68 16 45 H 0.08 1.34 6.68 -51.93 -0.35 0.99 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -32.69 367.13 -9.97 -42.67 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.55 Total: 4.41 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -3.50 Total: 0.79 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.52 Total: -58.28 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.10 Total: -13.64 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.03 Total: 18.52 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.69 -9.97 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758195494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.855 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds