Wall clock time and date at job start Tue Mar 31 2020 11:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 110.85245 * 2 1 4 4 C 1.38225 * 119.62127 * 47.34412 * 3 2 1 5 5 C 1.38626 * 119.16338 * 180.02562 * 4 3 2 6 6 C 1.38671 * 118.42264 * 359.97438 * 5 4 3 7 7 C 1.38190 * 119.15938 * 359.97438 * 6 5 4 8 8 N 1.31859 * 119.61828 * 227.33383 * 3 2 1 9 9 C 1.54627 * 110.96912 * 123.79195 * 2 1 3 10 10 C 1.51274 * 104.19639 * 93.35816 * 9 2 1 11 11 O 1.21283 * 124.94270 * 196.21526 * 10 9 2 12 12 N 1.34423 * 110.11416 * 16.24985 * 10 9 2 13 13 C 1.46502 * 124.34716 * 180.38568 * 12 10 9 14 14 N 1.46495 * 109.47194 * 89.97735 * 13 12 10 15 15 C 1.36942 * 120.00089 * 270.00004 * 14 13 12 16 16 H 1.07996 * 119.99588 * 144.05285 * 15 14 13 17 17 C 1.38813 * 119.99782 * 324.04908 * 15 14 13 18 18 N 1.31625 * 120.00079 * 339.15475 * 17 15 14 19 19 Si 1.86797 * 119.99813 * 159.15486 * 17 15 14 20 20 H 1.48497 * 109.47019 * 60.00535 * 19 17 15 21 21 H 1.48498 * 109.46895 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47256 * 299.99923 * 19 17 15 23 23 C 1.46497 * 120.00196 * 89.99756 * 14 13 12 24 24 C 1.53004 * 117.50180 * 183.24833 * 23 14 13 25 25 C 1.53002 * 117.50361 * 114.58662 * 23 14 13 26 26 C 1.46761 * 111.30104 * 0.41019 * 12 10 9 27 27 H 1.08998 * 109.47188 * 60.69775 * 1 2 3 28 28 H 1.09000 * 109.46874 * 180.70285 * 1 2 3 29 29 H 1.09005 * 109.47005 * 300.69694 * 1 2 3 30 30 H 1.08001 * 120.41759 * 0.02562 * 4 3 2 31 31 H 1.08003 * 120.79023 * 180.24494 * 5 4 3 32 32 H 1.07993 * 120.41850 * 179.97438 * 6 5 4 33 33 H 1.08000 * 119.61232 * 179.97438 * 7 6 5 34 34 H 1.09000 * 110.48242 * 212.03803 * 9 2 1 35 35 H 1.09004 * 110.48682 * 334.67545 * 9 2 1 36 36 H 1.09007 * 109.46738 * 209.97788 * 13 12 10 37 37 H 1.08999 * 109.47159 * 329.97646 * 13 12 10 38 38 H 0.96997 * 119.99976 * 175.48430 * 18 17 15 39 39 H 1.09003 * 115.55081 * 328.92248 * 23 14 13 40 40 H 1.08994 * 117.49474 * 359.97438 * 24 23 14 41 41 H 1.09000 * 117.49376 * 145.02057 * 24 23 14 42 42 H 1.08990 * 117.50336 * 214.98477 * 25 23 14 43 43 H 1.09004 * 117.49412 * 359.97438 * 25 23 14 44 44 H 1.09002 * 110.24154 * 223.98067 * 26 12 10 45 45 H 1.09001 * 110.24950 * 101.98561 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0665 1.4083 0.0000 4 6 1.5488 2.3366 0.8837 5 6 2.0489 3.6295 0.8752 6 6 3.0559 3.9417 -0.0256 7 6 3.5246 2.9605 -0.8783 8 7 3.0245 1.7407 -0.8429 9 6 2.0834 -0.8030 1.1999 10 6 2.2964 -2.1953 0.6480 11 8 2.4538 -3.1925 1.3202 12 7 2.2866 -2.1664 -0.6959 13 6 2.4571 -3.3449 -1.5493 14 7 1.1476 -3.9398 -1.8277 15 6 0.6409 -4.9007 -0.9938 16 1 -0.4200 -4.9382 -0.7951 17 6 1.4908 -5.8264 -0.4043 18 7 2.6748 -6.0606 -0.9293 19 14 0.9540 -6.7398 1.1342 20 1 -0.2774 -7.5173 0.8439 21 1 2.0336 -7.6651 1.5624 22 1 0.6790 -5.7635 2.2189 23 6 0.3802 -3.5068 -2.9980 24 6 -1.0124 -4.1100 -3.1924 25 6 0.1404 -4.5348 -4.1055 26 6 2.0837 -0.8024 -1.1983 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3633 0.5246 0.8837 30 1 0.7646 2.0581 1.5721 31 1 1.6664 4.3747 1.5569 32 1 3.4687 4.9390 -0.0601 33 1 4.3084 3.1958 -1.5831 34 1 3.0282 -0.3787 1.5398 35 1 1.3581 -0.8219 2.0134 36 1 2.9287 -3.0495 -2.4866 37 1 3.0867 -4.0744 -1.0398 38 1 3.2943 -6.6579 -0.4817 39 1 0.5254 -2.4689 -3.2977 40 1 -1.3574 -4.8293 -2.4497 41 1 -1.7832 -3.4690 -3.6203 42 1 0.1275 -4.1733 -5.1336 43 1 0.5540 -5.5333 -3.9635 44 1 1.3628 -0.8051 -2.0159 45 1 3.0310 -0.3782 -1.5310 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758195494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:21 Heat of formation + Delta-G solvation = 45.099441 kcal Electronic energy + Delta-G solvation = -27265.646127 eV Core-core repulsion = 23670.286295 eV Total energy + Delta-G solvation = -3595.359832 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.88033 -40.50718 -38.62442 -37.55703 -35.62740 -34.33765 -33.33319 -32.21364 -30.89010 -29.35062 -27.80444 -26.89650 -25.17639 -24.23408 -24.05169 -22.99081 -21.75126 -20.87184 -20.31389 -18.59947 -17.82907 -17.36907 -17.16455 -16.93168 -16.72458 -16.34851 -16.26756 -15.63477 -15.49757 -15.23343 -14.78289 -14.68276 -14.37745 -14.21232 -13.85818 -13.73370 -13.65880 -13.13012 -13.09484 -12.90012 -12.77644 -12.64840 -12.45931 -12.25684 -12.16858 -12.01490 -11.96569 -11.75625 -11.45779 -11.00218 -10.73096 -10.64461 -10.42769 -10.27258 -9.80045 -9.42587 -8.63504 -7.90329 -5.50007 0.23938 0.46828 1.33852 1.43089 1.50797 1.85564 2.40409 2.56968 2.89264 3.11854 3.19581 3.41926 3.46190 3.55988 3.69865 3.85937 3.99171 4.13944 4.22321 4.26644 4.33604 4.36658 4.42511 4.47213 4.58221 4.63384 4.67127 4.70121 4.78175 4.86349 4.93695 4.95598 5.01670 5.06366 5.09589 5.28570 5.31946 5.35531 5.40932 5.46785 5.54395 5.67373 5.88414 5.96495 6.39601 6.61503 7.10768 7.15110 7.53301 7.79652 8.26326 9.06473 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017117 B = 0.004352 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.396512 B = 6432.074047 C = 7182.890393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.012 4.012 3 C 0.133 3.867 4 C -0.167 4.167 5 C -0.074 4.074 6 C -0.173 4.173 7 C 0.086 3.914 8 N -0.510 5.510 9 C -0.128 4.128 10 C 0.499 3.501 11 O -0.580 6.580 12 N -0.616 5.616 13 C 0.362 3.638 14 N -0.554 5.554 15 C -0.258 4.258 16 H 0.052 0.948 17 C -0.005 4.005 18 N -0.909 5.909 19 Si 0.940 3.060 20 H -0.271 1.271 21 H -0.295 1.295 22 H -0.293 1.293 23 C 0.099 3.901 24 C -0.181 4.181 25 C -0.210 4.210 26 C 0.117 3.883 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.151 0.849 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.172 0.828 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.249 0.751 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 24.547 -0.249 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.014 4.014 3 C -0.004 4.004 4 C -0.186 4.186 5 C -0.099 4.099 6 C -0.192 4.192 7 C -0.070 4.070 8 N -0.219 5.219 9 C -0.169 4.169 10 C 0.286 3.714 11 O -0.460 6.460 12 N -0.352 5.352 13 C 0.155 3.845 14 N -0.273 5.273 15 C -0.387 4.387 16 H 0.070 0.930 17 C -0.203 4.203 18 N -0.552 5.552 19 Si 0.770 3.230 20 H -0.197 1.197 21 H -0.221 1.221 22 H -0.220 1.220 23 C -0.008 4.008 24 C -0.219 4.219 25 C -0.250 4.250 26 C -0.006 4.006 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.169 0.831 31 H 0.182 0.818 32 H 0.181 0.819 33 H 0.189 0.811 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.058 0.942 39 H 0.130 0.870 40 H 0.089 0.911 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.821 23.139 -0.554 23.217 hybrid contribution -0.229 -0.621 1.366 1.518 sum -2.050 22.518 0.812 22.625 Atomic orbital electron populations 1.21790 0.90807 1.02081 1.03750 1.20218 0.96901 0.89939 0.94330 1.20623 0.92743 0.94364 0.92694 1.22117 1.02109 0.94159 1.00236 1.21981 0.94493 0.96215 0.97254 1.22494 0.98099 1.02011 0.96602 1.23182 0.98247 0.87779 0.97824 1.67335 1.10613 1.21445 1.22476 1.22419 1.03853 0.91802 0.98794 1.21422 0.75491 0.90871 0.83620 1.90683 1.52072 1.39340 1.63907 1.49961 1.69442 1.09122 1.06707 1.20870 0.87872 0.83880 0.91850 1.43992 1.18968 1.40570 1.23790 1.18884 0.92757 1.05537 1.21562 0.93027 1.25428 0.97337 0.96755 1.00774 1.69997 1.09418 1.38179 1.37638 0.85777 0.77311 0.77790 0.82150 1.19708 1.22081 1.22003 1.21546 0.95172 0.94789 0.89310 1.23017 0.91903 1.04259 1.02679 1.23252 1.04553 1.00850 0.96353 1.22159 1.01765 0.80481 0.96225 0.90923 0.93716 0.89528 0.83125 0.81846 0.81936 0.81052 0.88027 0.87218 0.92125 0.89642 0.94223 0.87029 0.91120 0.87017 0.87660 0.92575 0.91013 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.14 71.98 0.59 -2.33 16 2 C -0.01 -0.32 0.82 -51.87 -0.04 -0.37 16 3 C 0.13 2.93 5.55 42.55 0.24 3.17 16 4 C -0.17 -2.69 9.23 22.36 0.21 -2.48 16 5 C -0.07 -0.88 10.18 22.47 0.23 -0.65 16 6 C -0.17 -2.05 10.11 22.36 0.23 -1.82 16 7 C 0.09 1.44 11.18 84.67 0.95 2.39 16 8 N -0.51 -11.83 8.49 -183.88 -1.56 -13.39 16 9 C -0.13 -3.96 5.94 30.58 0.18 -3.77 16 10 C 0.50 22.17 8.02 87.89 0.71 22.87 16 11 O -0.58 -32.38 17.59 -3.04 -0.05 -32.44 16 12 N -0.62 -25.76 3.17 -829.73 -2.63 -28.39 16 13 C 0.36 17.69 6.13 170.96 1.05 18.74 16 14 N -0.55 -27.65 3.01 -689.68 -2.08 -29.73 16 15 C -0.26 -14.59 8.60 84.03 0.72 -13.87 16 16 H 0.05 2.97 6.58 -2.91 -0.02 2.96 16 17 C 0.00 -0.27 4.99 84.86 0.42 0.16 16 18 N -0.91 -55.88 11.31 21.65 0.24 -55.63 16 19 Si 0.94 50.23 29.61 68.60 2.03 52.26 16 20 H -0.27 -13.61 7.11 99.48 0.71 -12.91 16 21 H -0.29 -15.72 7.11 99.48 0.71 -15.02 16 22 H -0.29 -16.34 7.11 99.48 0.71 -15.63 16 23 C 0.10 4.06 6.56 44.99 0.30 4.36 16 24 C -0.18 -6.78 9.80 30.62 0.30 -6.48 16 25 C -0.21 -8.15 10.36 30.62 0.32 -7.83 16 26 C 0.12 3.70 6.31 86.83 0.55 4.25 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.50 6.88 -2.38 -0.02 1.48 16 30 H 0.15 1.87 6.93 -2.91 -0.02 1.85 16 31 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 32 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 33 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 34 H 0.10 2.94 7.89 -2.39 -0.02 2.92 16 35 H 0.11 3.06 7.91 -2.38 -0.02 3.04 16 36 H 0.06 2.73 8.07 -2.38 -0.02 2.71 16 37 H 0.09 5.03 5.15 -2.39 -0.01 5.01 16 38 H 0.25 15.15 8.32 -92.71 -0.77 14.38 16 39 H 0.11 3.92 7.62 -2.39 -0.02 3.90 16 40 H 0.07 3.06 6.39 -2.39 -0.02 3.05 16 41 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.06 2.61 8.14 -2.38 -0.02 2.60 16 44 H 0.07 2.19 7.38 -2.39 -0.02 2.17 16 45 H 0.09 2.71 6.68 -2.39 -0.02 2.69 16 Total: -1.00 -76.47 367.13 3.87 -72.61 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.99 Total: 18.38 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 6.93 Total: 16.33 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -6.03 Total: -127.14 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.05 Total: -32.44 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 2.03 Total: 52.26 kcal Total: -76.47 3.87 -72.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758195494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.705 kcal (2) G-P(sol) polarization free energy of solvation -76.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds