Wall clock time and date at job start Tue Mar 31 2020 10:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38231 * 120.00491 * 2 1 4 4 C 1.38237 * 120.00690 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00228 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99580 * 359.97438 * 4 3 2 7 7 C 1.38234 * 120.00233 * 359.95919 * 6 4 3 8 8 C 1.50698 * 120.00240 * 180.02562 * 7 6 4 9 9 C 1.50703 * 109.47198 * 89.99818 * 8 7 6 10 10 N 1.29948 * 126.28506 * 90.02426 * 9 8 7 11 11 O 1.21303 * 110.24669 * 179.97438 * 10 9 8 12 12 C 1.33643 * 109.81437 * 0.02562 * 11 10 9 13 13 C 1.50690 * 126.55005 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47115 * 195.02639 * 13 12 11 15 15 N 1.46900 * 109.47427 * 315.02220 * 13 12 11 16 16 C 1.52999 * 109.47313 * 75.02574 * 13 12 11 17 17 C 1.53002 * 109.47105 * 174.99756 * 16 13 12 18 18 C 1.50705 * 109.46965 * 179.97438 * 17 16 13 19 19 H 1.07999 * 119.99789 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99990 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00224 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00175 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47018 * 59.99441 * 22 20 18 24 24 H 1.48496 * 109.47167 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46753 * 299.99722 * 22 20 18 26 26 N 1.31126 * 106.89467 * 0.02562 * 12 11 10 27 27 C 1.38241 * 120.00062 * 0.27649 * 7 6 4 28 28 H 1.09001 * 109.46842 * 90.00384 * 1 2 3 29 29 H 1.09002 * 109.47129 * 210.00298 * 1 2 3 30 30 H 1.08995 * 109.47093 * 330.00445 * 1 2 3 31 31 H 1.08009 * 119.99901 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.47041 * 270.01871 * 5 4 3 33 33 H 1.08995 * 109.46826 * 30.01984 * 5 4 3 34 34 H 1.08999 * 109.46795 * 150.02161 * 5 4 3 35 35 H 1.07998 * 120.00193 * 179.97438 * 6 4 3 36 36 H 1.08998 * 109.47123 * 329.99764 * 8 7 6 37 37 H 1.09003 * 109.47140 * 210.00102 * 8 7 6 38 38 H 1.00899 * 110.99778 * 296.04973 * 15 13 12 39 39 H 1.00902 * 110.99875 * 59.99967 * 15 13 12 40 40 H 1.09001 * 109.47196 * 294.99804 * 16 13 12 41 41 H 1.08998 * 109.47568 * 54.99720 * 16 13 12 42 42 H 1.08999 * 109.47187 * 299.99544 * 17 16 13 43 43 H 1.09002 * 109.47195 * 60.00483 * 17 16 13 44 44 H 0.96997 * 119.99988 * 179.97438 * 21 20 18 45 45 H 1.07992 * 120.00244 * 179.72992 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2718 -0.0001 -0.0005 7 6 3.5806 -1.1972 0.0009 8 6 4.3340 -2.5023 0.0014 9 6 4.5861 -2.9362 1.4225 10 7 3.8078 -3.6817 2.1485 11 8 4.2932 -3.8501 3.2473 12 6 5.4625 -3.2081 3.3293 13 6 6.3807 -3.1648 4.5233 14 1 7.1090 -2.3644 4.3927 15 7 5.5929 -2.9163 5.7381 16 6 7.1111 -4.5028 4.6539 17 6 8.1335 -4.4170 5.7889 18 6 8.8525 -5.7352 5.9179 19 1 8.6053 -6.5521 5.2563 20 6 9.8260 -5.8981 6.8806 21 7 10.1274 -4.9031 7.6861 22 14 10.7178 -7.5318 7.0401 23 1 11.4170 -7.8404 5.7669 24 1 11.7091 -7.4490 8.1426 25 1 9.7354 -8.6049 7.3380 26 7 5.6575 -2.6223 2.1725 27 6 2.1982 -1.1972 -0.0035 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6583 2.1325 -0.0004 32 1 4.5151 2.8168 -1.0289 33 1 3.7454 3.2618 0.5131 34 1 5.2869 2.3718 0.5120 35 1 5.3517 -0.0001 -0.0014 36 1 5.2861 -2.3724 -0.5131 37 1 3.7446 -3.2624 -0.5115 38 1 5.1522 -2.0093 5.7040 39 1 4.9099 -3.6450 5.8815 40 1 6.3902 -5.2904 4.8730 41 1 7.6240 -4.7295 3.7193 42 1 8.8545 -3.6294 5.5698 43 1 7.6206 -4.1904 6.7237 44 1 10.8120 -5.0179 8.3636 45 1 1.6582 -2.1324 -0.0069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822705888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:48 Heat of formation + Delta-G solvation = 62.568810 kcal Electronic energy + Delta-G solvation = -25016.282548 eV Core-core repulsion = 21421.680245 eV Total energy + Delta-G solvation = -3594.602303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.48233 -39.92559 -36.71441 -36.17169 -33.83894 -33.79658 -33.02120 -31.53614 -30.27613 -28.57330 -27.28770 -26.98737 -26.51362 -24.15580 -23.46858 -21.77124 -20.99852 -20.70257 -19.88535 -17.92774 -17.39395 -16.56248 -16.32834 -16.03621 -15.89436 -15.21626 -14.86563 -14.64754 -14.36069 -14.07602 -13.96884 -13.51913 -13.49227 -13.26686 -12.92157 -12.83463 -12.49577 -12.44693 -12.07951 -12.03036 -11.81360 -11.72841 -11.67271 -11.25728 -11.17010 -10.96439 -10.88574 -10.71101 -10.58214 -10.00269 -9.82885 -9.37024 -9.04056 -8.94399 -8.81355 -8.80566 -8.27878 -5.94955 -3.97233 0.99367 1.10880 1.25611 2.29057 2.93048 3.33181 3.36339 3.40798 3.43242 3.76320 4.05820 4.40830 4.47592 4.49912 4.50395 4.71267 4.87273 4.91251 5.01000 5.05948 5.17159 5.25475 5.27116 5.30914 5.33784 5.38500 5.40524 5.43253 5.54757 5.59578 5.69447 5.78619 5.89698 5.92287 6.03997 6.26498 6.27873 6.36422 6.40367 6.56923 6.75091 7.00400 7.16669 7.51149 7.74260 7.92147 8.09121 8.24171 8.45706 9.09819 9.65975 11.15922 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.002299 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.043609 B =12174.312484 C =12498.166537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.120 4.120 4 C -0.083 4.083 5 C -0.115 4.115 6 C -0.107 4.107 7 C -0.078 4.078 8 C 0.013 3.987 9 C 0.172 3.828 10 N -0.388 5.388 11 O 0.072 5.928 12 C 0.162 3.838 13 C 0.185 3.815 14 H 0.124 0.876 15 N -0.812 5.812 16 C -0.101 4.101 17 C 0.032 3.968 18 C -0.523 4.523 19 H 0.052 0.948 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.890 3.110 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 N -0.482 5.482 27 C -0.113 4.113 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.340 0.660 39 H 0.349 0.651 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.016 0.984 43 H 0.037 0.963 44 H 0.260 0.740 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.526 12.921 -16.774 27.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.085 4.085 3 C -0.138 4.138 4 C -0.083 4.083 5 C -0.171 4.171 6 C -0.125 4.125 7 C -0.079 4.079 8 C -0.025 4.025 9 C -0.101 4.101 10 N -0.097 5.097 11 O 0.015 5.985 12 C -0.062 4.062 13 C 0.070 3.930 14 H 0.142 0.858 15 N -0.341 5.341 16 C -0.140 4.140 17 C -0.005 4.005 18 C -0.562 4.562 19 H 0.070 0.930 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.718 3.282 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.203 1.203 26 N -0.216 5.216 27 C -0.131 4.131 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.144 0.856 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.153 0.847 39 H 0.163 0.837 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.034 0.966 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.261 12.833 -16.795 27.289 hybrid contribution -0.212 -0.936 -0.436 1.054 sum -17.473 11.896 -17.231 27.271 Atomic orbital electron populations 1.20785 0.91082 1.02857 1.02309 1.19873 0.96092 0.92954 0.99590 1.20932 0.93548 0.97507 1.01791 1.19907 0.93776 0.95348 0.99300 1.20797 1.00119 0.93851 1.02359 1.20974 1.00075 0.91191 1.00252 1.19524 0.93563 0.93875 1.00971 1.18836 1.02098 0.94902 0.86697 1.25565 0.88236 0.96376 0.99907 1.74570 1.22085 1.20039 0.93054 1.85248 1.30603 1.55546 1.27079 1.31205 0.87538 0.88862 0.98572 1.20841 0.90460 1.03803 0.77854 0.85820 1.58826 1.32608 1.07557 1.35078 1.21840 0.98930 0.91034 1.02215 1.19014 0.92073 0.96726 0.92685 1.21204 1.19867 0.98415 1.16679 0.92975 1.24982 0.97031 0.96457 0.95812 1.69959 1.32066 1.31073 1.20029 0.86699 0.79536 0.84404 0.77573 1.20354 1.21324 1.20304 1.71895 1.23513 1.24025 1.02118 1.20924 0.93318 0.97808 1.01026 0.91131 0.91492 0.91539 0.86135 0.91101 0.91558 0.91249 0.85600 0.87663 0.88285 0.84746 0.83711 0.92425 0.92326 0.96587 0.94461 0.92997 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.09 -0.81 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.11 9.36 -39.58 -0.37 -1.48 16 4 C -0.08 -0.81 5.88 -104.62 -0.62 -1.42 16 5 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 6 C -0.11 -1.15 9.36 -39.58 -0.37 -1.52 16 7 C -0.08 -0.87 5.12 -104.62 -0.54 -1.40 16 8 C 0.01 0.15 5.97 -29.03 -0.17 -0.03 16 9 C 0.17 2.52 7.45 -156.37 -1.17 1.35 16 10 N -0.39 -6.08 12.16 30.90 0.38 -5.70 16 11 O 0.07 1.13 11.29 18.10 0.20 1.34 16 12 C 0.16 2.54 7.31 -13.06 -0.10 2.44 16 13 C 0.19 2.98 3.29 -68.87 -0.23 2.75 16 14 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 15 N -0.81 -11.79 8.68 -5.66 -0.05 -11.83 16 16 C -0.10 -1.98 4.78 -26.73 -0.13 -2.11 16 17 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 18 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 19 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 22 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 N -0.48 -7.69 11.55 -9.87 -0.11 -7.80 16 27 C -0.11 -1.18 9.36 -39.58 -0.37 -1.55 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.11 1.03 8.09 -51.93 -0.42 0.61 16 37 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.34 4.12 9.06 -39.29 -0.36 3.76 16 39 H 0.35 4.71 8.98 -39.29 -0.35 4.36 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 384.40 15.07 5.79 5.79 Total: -1.00 -31.85 384.40 -9.54 -41.40 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.98 Total: 4.05 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -4.49 Total: -17.98 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.95 Total: -51.19 kcal Atomic # 8 Polarization: 1.13 SS G_CDS: 0.20 Total: 1.34 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.85 -9.54 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822705888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.966 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds