Wall clock time and date at job start Tue Mar 31 2020 10:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38231 * 120.00491 * 2 1 4 4 C 1.38237 * 120.00690 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00228 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99580 * 359.97438 * 4 3 2 7 7 C 1.38234 * 120.00233 * 359.95919 * 6 4 3 8 8 C 1.50698 * 120.00240 * 180.02562 * 7 6 4 9 9 C 1.50703 * 109.47198 * 89.99818 * 8 7 6 10 10 N 1.29948 * 126.28506 * 90.02426 * 9 8 7 11 11 O 1.21303 * 110.24669 * 179.97438 * 10 9 8 12 12 C 1.33643 * 109.81437 * 0.02562 * 11 10 9 13 13 C 1.50690 * 126.55005 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47115 * 195.02639 * 13 12 11 15 15 N 1.46900 * 109.47427 * 315.02220 * 13 12 11 16 16 C 1.52999 * 109.47313 * 75.02574 * 13 12 11 17 17 C 1.53002 * 109.47105 * 174.99756 * 16 13 12 18 18 C 1.50705 * 109.46965 * 179.97438 * 17 16 13 19 19 H 1.07999 * 119.99789 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99990 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00224 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00175 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47018 * 59.99441 * 22 20 18 24 24 H 1.48496 * 109.47167 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46753 * 299.99722 * 22 20 18 26 26 N 1.31126 * 106.89467 * 0.02562 * 12 11 10 27 27 C 1.38241 * 120.00062 * 0.27649 * 7 6 4 28 28 H 1.09001 * 109.46842 * 90.00384 * 1 2 3 29 29 H 1.09002 * 109.47129 * 210.00298 * 1 2 3 30 30 H 1.08995 * 109.47093 * 330.00445 * 1 2 3 31 31 H 1.08009 * 119.99901 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.47041 * 270.01871 * 5 4 3 33 33 H 1.08995 * 109.46826 * 30.01984 * 5 4 3 34 34 H 1.08999 * 109.46795 * 150.02161 * 5 4 3 35 35 H 1.07998 * 120.00193 * 179.97438 * 6 4 3 36 36 H 1.08998 * 109.47123 * 329.99764 * 8 7 6 37 37 H 1.09003 * 109.47140 * 210.00102 * 8 7 6 38 38 H 1.00899 * 110.99778 * 296.04973 * 15 13 12 39 39 H 1.00902 * 110.99875 * 59.99967 * 15 13 12 40 40 H 1.09001 * 109.47196 * 294.99804 * 16 13 12 41 41 H 1.08998 * 109.47568 * 54.99720 * 16 13 12 42 42 H 1.08999 * 109.47187 * 299.99544 * 17 16 13 43 43 H 1.09002 * 109.47195 * 60.00483 * 17 16 13 44 44 H 0.96997 * 119.99988 * 179.97438 * 21 20 18 45 45 H 1.07992 * 120.00244 * 179.72992 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2718 -0.0001 -0.0005 7 6 3.5806 -1.1972 0.0009 8 6 4.3340 -2.5023 0.0014 9 6 4.5861 -2.9362 1.4225 10 7 3.8078 -3.6817 2.1485 11 8 4.2932 -3.8501 3.2473 12 6 5.4625 -3.2081 3.3293 13 6 6.3807 -3.1648 4.5233 14 1 7.1090 -2.3644 4.3927 15 7 5.5929 -2.9163 5.7381 16 6 7.1111 -4.5028 4.6539 17 6 8.1335 -4.4170 5.7889 18 6 8.8525 -5.7352 5.9179 19 1 8.6053 -6.5521 5.2563 20 6 9.8260 -5.8981 6.8806 21 7 10.1274 -4.9031 7.6861 22 14 10.7178 -7.5318 7.0401 23 1 11.4170 -7.8404 5.7669 24 1 11.7091 -7.4490 8.1426 25 1 9.7354 -8.6049 7.3380 26 7 5.6575 -2.6223 2.1725 27 6 2.1982 -1.1972 -0.0035 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6583 2.1325 -0.0004 32 1 4.5151 2.8168 -1.0289 33 1 3.7454 3.2618 0.5131 34 1 5.2869 2.3718 0.5120 35 1 5.3517 -0.0001 -0.0014 36 1 5.2861 -2.3724 -0.5131 37 1 3.7446 -3.2624 -0.5115 38 1 5.1522 -2.0093 5.7040 39 1 4.9099 -3.6450 5.8815 40 1 6.3902 -5.2904 4.8730 41 1 7.6240 -4.7295 3.7193 42 1 8.8545 -3.6294 5.5698 43 1 7.6206 -4.1904 6.7237 44 1 10.8120 -5.0179 8.3636 45 1 1.6582 -2.1324 -0.0069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822705888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:47 Heat of formation + Delta-G solvation = 42.956088 kcal Electronic energy + Delta-G solvation = -25017.133019 eV Core-core repulsion = 21421.680245 eV Total energy + Delta-G solvation = -3595.452775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.69082 -40.65247 -38.13091 -37.28323 -35.20998 -34.59562 -34.45070 -32.76286 -31.98990 -29.37042 -28.22633 -27.97449 -27.64106 -25.78113 -24.70506 -23.11566 -21.99737 -21.68148 -21.12318 -19.15568 -18.73407 -18.23451 -17.30920 -17.27791 -16.84644 -16.55128 -16.24499 -15.62890 -15.56919 -15.48870 -14.73676 -14.30082 -14.21321 -14.13174 -14.04551 -13.94450 -13.79991 -13.60387 -13.38686 -13.27098 -12.89136 -12.77490 -12.67446 -12.48214 -12.47005 -12.39390 -12.15654 -11.99832 -11.93610 -11.70385 -11.51082 -11.22206 -10.87187 -10.47845 -10.02469 -9.67272 -9.52778 -8.12317 -6.21992 -0.02159 0.27419 0.37173 1.12108 1.43642 1.45764 1.53430 1.67585 2.42879 2.47312 2.74139 3.01132 3.21033 3.50865 3.63440 3.71542 3.86821 3.88192 4.00541 4.16720 4.26615 4.30795 4.36829 4.44490 4.47718 4.58094 4.64448 4.70376 4.76592 4.76938 4.81072 4.84893 4.94212 4.94813 5.02234 5.19661 5.22691 5.30379 5.52251 5.56255 5.58963 5.63698 5.84043 5.97943 5.99986 6.04237 6.31368 6.44480 6.95803 7.03493 7.45768 8.98683 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.002299 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.043609 B =12174.312484 C =12498.166537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.126 4.126 4 C -0.091 4.091 5 C -0.113 4.113 6 C -0.124 4.124 7 C -0.090 4.090 8 C 0.014 3.986 9 C 0.176 3.824 10 N -0.400 5.400 11 O 0.067 5.933 12 C 0.163 3.837 13 C 0.201 3.799 14 H 0.123 0.877 15 N -0.818 5.818 16 C -0.088 4.088 17 C 0.040 3.960 18 C -0.544 4.544 19 H 0.055 0.945 20 C 0.003 3.997 21 N -0.928 5.928 22 Si 0.958 3.042 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.268 1.268 26 N -0.494 5.494 27 C -0.127 4.127 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.355 0.645 39 H 0.356 0.644 40 H 0.061 0.939 41 H 0.055 0.945 42 H -0.008 1.008 43 H 0.018 0.982 44 H 0.262 0.738 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.527 13.066 -17.784 28.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.091 4.091 5 C -0.170 4.170 6 C -0.142 4.142 7 C -0.091 4.091 8 C -0.025 4.025 9 C -0.097 4.097 10 N -0.110 5.110 11 O 0.013 5.987 12 C -0.060 4.060 13 C 0.085 3.915 14 H 0.140 0.860 15 N -0.349 5.349 16 C -0.127 4.127 17 C 0.003 3.997 18 C -0.582 4.582 19 H 0.074 0.926 20 C -0.195 4.195 21 N -0.568 5.568 22 Si 0.783 3.217 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.193 1.193 26 N -0.228 5.228 27 C -0.145 4.145 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.159 0.841 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.143 0.857 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.170 0.830 39 H 0.170 0.830 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.010 0.990 43 H 0.036 0.964 44 H 0.071 0.929 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.281 12.977 -17.804 28.629 hybrid contribution 0.053 -0.916 -0.149 0.929 sum -18.229 12.062 -17.952 28.285 Atomic orbital electron populations 1.20826 0.89354 1.03410 1.03279 1.20218 0.97499 0.92732 0.98705 1.21240 0.93572 0.98362 1.01221 1.20225 0.94336 0.95915 0.98612 1.20832 0.99857 0.93019 1.03265 1.21107 1.00229 0.91711 1.01147 1.19574 0.93910 0.93804 1.01792 1.19025 1.03088 0.95516 0.84846 1.26156 0.87332 0.95314 1.00910 1.74568 1.22518 1.20801 0.93155 1.85237 1.30523 1.55627 1.27345 1.30957 0.87642 0.89111 0.98329 1.20416 0.90667 1.01638 0.78748 0.85969 1.58780 1.33132 1.08823 1.34142 1.21543 0.97974 0.93307 0.99893 1.18818 0.92410 0.94808 0.93688 1.21678 1.20234 0.99618 1.16668 0.92645 1.25869 0.97981 1.00160 0.95519 1.70087 1.32790 1.33235 1.20718 0.85618 0.78364 0.79967 0.77776 1.19511 1.20951 1.19350 1.71913 1.24190 1.24369 1.02331 1.21085 0.93295 0.98515 1.01645 0.89876 0.91501 0.90432 0.84079 0.89889 0.90419 0.91553 0.85704 0.86569 0.86754 0.83016 0.82953 0.92020 0.92619 0.98986 0.96401 0.92907 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.24 0.71 -0.64 16 2 C -0.09 -1.61 5.88 -19.86 -0.12 -1.73 16 3 C -0.13 -2.13 9.36 22.27 0.21 -1.92 16 4 C -0.09 -1.66 5.88 -19.87 -0.12 -1.77 16 5 C -0.11 -1.49 10.01 71.24 0.71 -0.78 16 6 C -0.12 -2.58 9.36 22.27 0.21 -2.38 16 7 C -0.09 -1.92 5.12 -19.87 -0.10 -2.02 16 8 C 0.01 0.29 5.97 29.10 0.17 0.46 16 9 C 0.18 5.00 7.45 138.46 1.03 6.03 16 10 N -0.40 -12.20 12.16 -60.31 -0.73 -12.93 16 11 O 0.07 2.08 11.29 74.83 0.84 2.92 16 12 C 0.16 5.03 7.31 88.38 0.65 5.67 16 13 C 0.20 6.39 3.29 44.17 0.15 6.54 16 14 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 15 N -0.82 -23.36 8.68 -171.82 -1.49 -24.85 16 16 C -0.09 -3.46 4.78 30.59 0.15 -3.32 16 17 C 0.04 2.03 4.86 29.85 0.15 2.17 16 18 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 19 H 0.06 3.00 7.74 -2.91 -0.02 2.97 16 20 C 0.00 0.15 5.46 84.65 0.46 0.62 16 21 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 22 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 N -0.49 -15.45 11.55 -303.21 -3.50 -18.95 16 27 C -0.13 -2.56 9.36 22.27 0.21 -2.35 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 30 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 31 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 34 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 35 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.12 2.16 8.09 -2.39 -0.02 2.14 16 37 H 0.11 2.02 8.08 -2.39 -0.02 2.00 16 38 H 0.36 8.31 9.06 -89.69 -0.81 7.50 16 39 H 0.36 9.37 8.98 -89.69 -0.80 8.56 16 40 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 42 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 43 H 0.02 0.96 7.75 -2.39 -0.02 0.94 16 44 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 45 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -67.59 384.40 1.52 -66.07 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.61 Total: 22.92 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 4.70 Total: -25.69 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -5.44 Total: -112.47 kcal Atomic # 8 Polarization: 2.08 SS G_CDS: 0.84 Total: 2.92 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -67.59 1.52 -66.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822705888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.025 kcal (2) G-P(sol) polarization free energy of solvation -67.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds