Wall clock time and date at job start Tue Mar 31 2020 11:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38397 * 120.33032 * 2 1 4 4 N 1.31939 * 121.13634 * 180.02562 * 3 2 1 5 5 C 1.31665 * 121.90711 * 359.97438 * 4 3 2 6 6 C 1.39800 * 120.52412 * 0.02562 * 5 4 3 7 7 C 1.47205 * 120.58156 * 179.97438 * 6 5 4 8 8 C 1.34797 * 120.00229 * 312.08973 * 7 6 5 9 9 C 1.46426 * 120.00394 * 348.87584 * 8 7 6 10 10 O 1.21697 * 119.99663 * 353.10178 * 9 8 7 11 11 N 1.34777 * 120.00618 * 173.09546 * 9 8 7 12 12 C 1.47083 * 120.87920 * 354.57930 * 11 9 8 13 13 C 1.53693 * 108.27701 * 128.75161 * 12 11 9 14 14 N 1.46898 * 109.25761 * 54.08372 * 13 12 11 15 15 C 1.46895 * 111.00154 * 172.61036 * 14 13 12 16 16 C 1.50704 * 109.46875 * 294.29968 * 15 14 13 17 17 H 1.08003 * 120.00106 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00189 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99852 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00376 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47093 * 60.00056 * 20 18 16 22 22 H 1.48501 * 109.47537 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47246 * 300.00569 * 20 18 16 24 24 C 1.46903 * 111.26649 * 296.75566 * 14 13 12 25 25 C 1.47077 * 120.88377 * 174.85409 * 11 9 8 26 26 C 1.38283 * 120.33734 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47394 * 269.97770 * 1 2 3 28 28 H 1.09006 * 109.46919 * 29.98103 * 1 2 3 29 29 H 1.08999 * 109.46725 * 149.97441 * 1 2 3 30 30 H 1.07997 * 119.43522 * 0.02576 * 3 2 1 31 31 H 1.07998 * 119.73806 * 180.27994 * 5 4 3 32 32 H 1.08006 * 119.99851 * 132.09608 * 7 6 5 33 33 H 1.08005 * 120.00130 * 168.87996 * 8 7 6 34 34 H 1.08994 * 109.63053 * 248.52313 * 12 11 9 35 35 H 1.09004 * 109.62571 * 9.10002 * 12 11 9 36 36 H 1.09000 * 109.64947 * 294.07907 * 13 12 11 37 37 H 1.09001 * 109.41953 * 173.95188 * 13 12 11 38 38 H 1.08997 * 109.47418 * 54.29339 * 15 14 13 39 39 H 1.08994 * 109.47365 * 174.30037 * 15 14 13 40 40 H 0.97006 * 119.99732 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.49251 * 303.14416 * 24 14 13 42 42 H 1.08996 * 109.51152 * 183.07649 * 24 14 13 43 43 H 1.09001 * 109.62714 * 350.89887 * 25 11 9 44 44 H 1.08997 * 109.62672 * 111.47988 * 25 11 9 45 45 H 1.08002 * 120.86116 * 359.95707 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1945 0.0000 4 7 3.5251 1.2131 -0.0005 5 6 4.2367 0.1053 -0.0005 6 6 3.6072 -1.1430 -0.0006 7 6 4.4015 -2.3823 -0.0011 8 6 5.4236 -2.5274 -0.8679 9 6 5.5954 -1.5718 -1.9640 10 8 4.7484 -0.7224 -2.1690 11 7 6.6916 -1.6329 -2.7458 12 6 7.7823 -2.5725 -2.4445 13 6 8.0966 -3.3710 -3.7195 14 7 8.3681 -2.4378 -4.8210 15 6 8.8434 -3.1537 -6.0124 16 6 10.1844 -3.7770 -5.7221 17 1 10.6380 -3.6540 -4.7497 18 6 10.8319 -4.5052 -6.6976 19 7 10.2794 -4.6553 -7.8816 20 14 12.4944 -5.2772 -6.3381 21 1 12.3634 -6.2302 -5.2067 22 1 12.9750 -6.0010 -7.5424 23 1 13.4669 -4.2138 -5.9793 24 6 7.1859 -1.6234 -5.1330 25 6 6.8316 -0.7575 -3.9194 26 6 2.2054 -1.1935 -0.0005 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6621 2.1276 0.0004 31 1 5.3152 0.1613 0.0036 32 1 4.1652 -3.1755 0.6928 33 1 6.1159 -3.3485 -0.7539 34 1 8.6661 -2.0184 -2.1286 35 1 7.4708 -3.2531 -1.6520 36 1 7.2446 -4.0001 -3.9774 37 1 8.9726 -3.9967 -3.5485 38 1 8.1297 -3.9340 -6.2764 39 1 8.9401 -2.4538 -6.8424 40 1 10.7348 -5.1680 -8.5678 41 1 6.3466 -2.2768 -5.3711 42 1 7.4011 -0.9816 -5.9873 43 1 5.8912 -0.2376 -4.1026 44 1 7.6258 -0.0323 -3.7425 45 1 1.6851 -2.1399 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827483694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:45 Heat of formation + Delta-G solvation = 14.773488 kcal Electronic energy + Delta-G solvation = -25725.071774 eV Core-core repulsion = 22128.396910 eV Total energy + Delta-G solvation = -3596.674864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55703 -40.72399 -38.99859 -36.02609 -35.31699 -34.47803 -34.39942 -32.38414 -31.14916 -29.93474 -28.09335 -27.43528 -25.44147 -24.59410 -24.10703 -23.59528 -22.49436 -21.07220 -19.35541 -18.59273 -18.48899 -17.90720 -17.41204 -16.90777 -16.67832 -16.21610 -16.01497 -15.66933 -15.45247 -15.24677 -15.09426 -14.54756 -14.48192 -14.30749 -14.00007 -13.93050 -13.75752 -13.59261 -13.39957 -13.18496 -13.01239 -12.78308 -12.57157 -12.50977 -12.37822 -12.29085 -12.13592 -11.79174 -11.31022 -11.17578 -10.91592 -10.61138 -10.32495 -10.23051 -9.69016 -9.23386 -9.06884 -8.20198 -6.30977 -0.30874 0.42515 0.75479 1.43756 1.47072 1.54695 2.00902 2.27748 2.41367 2.92506 3.12050 3.21352 3.51520 3.60574 3.74807 3.94456 3.98798 4.02692 4.04850 4.14278 4.20359 4.21544 4.38348 4.41444 4.44168 4.61532 4.71263 4.76371 4.81749 4.84745 4.89194 4.93333 5.00889 5.06834 5.13532 5.20209 5.21839 5.22570 5.35274 5.39213 5.51025 5.63448 5.86158 6.01535 6.23397 6.46621 6.54743 6.84749 7.10538 7.16712 7.39140 8.90976 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.033802 B = 0.002433 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.152086 B =11504.017347 C =11726.487600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.148 4.148 3 C 0.079 3.921 4 N -0.520 5.520 5 C 0.142 3.858 6 C -0.117 4.117 7 C -0.011 4.011 8 C -0.212 4.212 9 C 0.532 3.468 10 O -0.574 6.574 11 N -0.607 5.607 12 C 0.118 3.882 13 C 0.048 3.952 14 N -0.540 5.540 15 C 0.209 3.791 16 C -0.521 4.521 17 H 0.071 0.929 18 C -0.001 4.001 19 N -0.937 5.937 20 Si 0.972 3.028 21 H -0.262 1.262 22 H -0.288 1.288 23 H -0.268 1.268 24 C 0.046 3.954 25 C 0.130 3.870 26 C -0.071 4.071 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.166 0.834 31 H 0.133 0.867 32 H 0.183 0.817 33 H 0.170 0.830 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.016 0.984 37 H 0.088 0.912 38 H -0.041 1.041 39 H 0.002 0.998 40 H 0.264 0.736 41 H 0.014 0.986 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.147 3.818 20.553 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.150 4.150 3 C -0.076 4.076 4 N -0.229 5.229 5 C -0.017 4.017 6 C -0.119 4.119 7 C -0.031 4.031 8 C -0.232 4.232 9 C 0.324 3.676 10 O -0.455 6.455 11 N -0.338 5.338 12 C -0.004 4.004 13 C -0.081 4.081 14 N -0.265 5.265 15 C 0.083 3.917 16 C -0.560 4.560 17 H 0.089 0.911 18 C -0.199 4.199 19 N -0.578 5.578 20 Si 0.797 3.203 21 H -0.187 1.187 22 H -0.214 1.214 23 H -0.193 1.193 24 C -0.084 4.084 25 C 0.007 3.993 26 C -0.097 4.097 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.183 0.817 31 H 0.150 0.850 32 H 0.200 0.800 33 H 0.187 0.813 34 H 0.102 0.898 35 H 0.143 0.857 36 H 0.034 0.966 37 H 0.106 0.894 38 H -0.023 1.023 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.743 5.322 20.402 26.314 hybrid contribution 0.053 -1.595 -1.312 2.065 sum -15.691 3.728 19.090 24.991 Atomic orbital electron populations 1.20738 0.87911 1.03831 1.03550 1.21113 0.99099 0.93550 1.01242 1.23039 0.89578 0.98820 0.96201 1.67484 1.09297 1.32275 1.13809 1.22614 0.99114 0.87470 0.92472 1.20161 0.94878 0.94919 1.01987 1.22653 0.90345 0.94225 0.95903 1.23276 1.01759 1.02051 0.96159 1.19104 0.80478 0.84384 0.83607 1.90842 1.43332 1.38639 1.72736 1.48272 1.19189 1.38910 1.27477 1.22213 0.89617 0.91867 0.96691 1.22494 1.00012 0.94081 0.91476 1.62013 1.30363 1.25346 1.08763 1.19366 0.94227 0.90697 0.87449 1.21420 1.03778 1.31386 0.99371 0.91095 1.25969 1.02230 0.97009 0.94668 1.70100 1.40708 1.41998 1.04945 0.85389 0.78755 0.78566 0.77624 1.18690 1.21361 1.19328 1.22402 0.91309 0.96543 0.98103 1.21501 1.01842 0.92149 0.83786 1.21863 0.92410 0.99435 0.95959 0.89495 0.90615 0.90603 0.81651 0.84985 0.80043 0.81285 0.89755 0.85749 0.96557 0.89381 1.02345 0.98007 0.92748 0.96819 0.90432 0.89844 0.90437 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.03 71.24 0.71 -0.42 16 2 C -0.15 -2.76 5.89 -19.82 -0.12 -2.88 16 3 C 0.08 1.80 10.85 84.71 0.92 2.72 16 4 N -0.52 -14.97 10.34 -194.51 -2.01 -16.98 16 5 C 0.14 3.84 7.96 85.10 0.68 4.51 16 6 C -0.12 -2.56 4.36 -20.05 -0.09 -2.64 16 7 C -0.01 -0.18 9.81 23.84 0.23 0.06 16 8 C -0.21 -3.88 9.25 23.61 0.22 -3.67 16 9 C 0.53 14.68 6.85 86.37 0.59 15.27 16 10 O -0.57 -19.54 11.95 -4.34 -0.05 -19.59 16 11 N -0.61 -17.30 3.00 -822.07 -2.47 -19.77 16 12 C 0.12 2.97 6.55 86.50 0.57 3.54 16 13 C 0.05 1.68 5.47 86.54 0.47 2.16 16 14 N -0.54 -22.68 4.62 -898.91 -4.15 -26.83 16 15 C 0.21 10.99 4.72 85.56 0.40 11.40 16 16 C -0.52 -28.49 8.41 25.60 0.22 -28.28 16 17 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 18 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 19 N -0.94 -55.94 13.29 21.45 0.28 -55.65 16 20 Si 0.97 42.90 29.54 68.60 2.03 44.92 16 21 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 C 0.05 1.69 5.62 86.38 0.49 2.18 16 25 C 0.13 4.14 6.58 86.35 0.57 4.70 16 26 C -0.07 -1.33 9.62 22.77 0.22 -1.11 16 27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.74 8.09 -2.38 -0.02 0.72 16 29 H 0.08 0.71 8.09 -2.39 -0.02 0.70 16 30 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.13 3.64 7.46 -2.91 -0.02 3.62 16 32 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.17 2.01 5.93 -2.91 -0.02 1.99 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.12 2.09 5.38 -2.39 -0.01 2.08 16 36 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.09 3.23 6.67 -2.39 -0.02 3.22 16 38 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 39 H 0.00 0.10 7.97 -2.39 -0.02 0.09 16 40 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.08 2.88 7.99 -2.39 -0.02 2.86 16 43 H 0.08 2.72 7.10 -2.39 -0.02 2.71 16 44 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -74.42 364.60 1.15 -73.26 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.98 Total: 12.68 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 6.54 Total: 7.95 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -8.35 Total: -119.23 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.05 Total: -19.59 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -74.42 1.15 -73.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.037 kcal (2) G-P(sol) polarization free energy of solvation -74.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds