Wall clock time and date at job start Tue Mar 31 2020 11:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38397 * 120.33543 * 2 1 4 4 N 1.31933 * 121.13966 * 180.02562 * 3 2 1 5 5 C 1.31657 * 121.90750 * 0.02562 * 4 3 2 6 6 C 1.39797 * 120.52374 * 359.71388 * 5 4 3 7 7 C 1.47213 * 120.58558 * 180.31777 * 6 5 4 8 8 C 1.34803 * 120.00066 * 0.24121 * 7 6 5 9 9 C 1.46429 * 120.00348 * 179.97438 * 8 7 6 10 10 O 1.21699 * 119.99794 * 355.02995 * 9 8 7 11 11 N 1.34769 * 120.00370 * 175.02308 * 9 8 7 12 12 C 1.47083 * 120.87959 * 4.96057 * 11 9 8 13 13 C 1.53696 * 108.27602 * 128.75268 * 12 11 9 14 14 N 1.46897 * 109.26101 * 54.08190 * 13 12 11 15 15 C 1.46899 * 111.00245 * 172.60725 * 14 13 12 16 16 C 1.50694 * 109.47227 * 294.30045 * 15 14 13 17 17 H 1.08004 * 119.99835 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00210 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00143 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99959 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47121 * 89.99610 * 20 18 16 22 22 H 1.48500 * 109.47310 * 210.00098 * 20 18 16 23 23 H 1.48500 * 109.47084 * 329.99945 * 20 18 16 24 24 C 1.46898 * 111.26520 * 296.75796 * 14 13 12 25 25 C 1.47083 * 120.88484 * 185.23207 * 11 9 8 26 26 C 1.38291 * 120.33328 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47309 * 269.97998 * 1 2 3 28 28 H 1.09001 * 109.46943 * 29.97549 * 1 2 3 29 29 H 1.09003 * 109.47378 * 149.97870 * 1 2 3 30 30 H 1.07997 * 119.42826 * 0.04401 * 3 2 1 31 31 H 1.08003 * 119.73863 * 180.02562 * 5 4 3 32 32 H 1.08003 * 120.00248 * 180.24648 * 7 6 5 33 33 H 1.08003 * 120.00216 * 0.02562 * 8 7 6 34 34 H 1.08993 * 109.62789 * 248.51849 * 12 11 9 35 35 H 1.08998 * 109.63193 * 9.10384 * 12 11 9 36 36 H 1.09001 * 109.64626 * 294.07889 * 13 12 11 37 37 H 1.09003 * 109.42366 * 173.94932 * 13 12 11 38 38 H 1.08999 * 109.47006 * 54.30183 * 15 14 13 39 39 H 1.08997 * 109.47038 * 174.30077 * 15 14 13 40 40 H 0.96998 * 119.99722 * 180.02562 * 19 18 16 41 41 H 1.08992 * 109.49678 * 303.14006 * 24 14 13 42 42 H 1.09005 * 109.51379 * 183.07219 * 24 14 13 43 43 H 1.08999 * 109.62264 * 350.90539 * 25 11 9 44 44 H 1.09000 * 109.62179 * 111.47867 * 25 11 9 45 45 H 1.07994 * 120.86680 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2059 1.1945 0.0000 4 7 3.5251 1.2130 -0.0005 5 6 4.2366 0.1052 -0.0015 6 6 3.6071 -1.1430 0.0039 7 6 4.4013 -2.3824 0.0098 8 6 5.7479 -2.3201 0.0149 9 6 6.5380 -3.5529 0.0213 10 8 5.9819 -4.6315 0.1134 11 7 7.8809 -3.4933 -0.0748 12 6 8.5807 -2.1996 -0.0781 13 6 9.6939 -2.2511 0.9804 14 7 10.5481 -3.4194 0.7288 15 6 11.7248 -3.4104 1.6082 16 6 12.6016 -2.2347 1.2621 17 1 12.3134 -1.5613 0.4685 18 6 13.7713 -2.0182 1.9592 19 7 14.5363 -0.9919 1.6575 20 14 14.2695 -3.1826 3.3323 21 1 15.0976 -4.2813 2.7736 22 1 15.0545 -2.4398 4.3509 23 1 13.0523 -3.7523 3.9642 24 6 9.7937 -4.6717 0.8716 25 6 8.6852 -4.7198 -0.1852 26 6 2.2053 -1.1936 -0.0005 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6621 2.1275 0.0007 31 1 5.3152 0.1613 -0.0015 32 1 3.9052 -3.3418 0.0099 33 1 6.2441 -1.3608 0.0151 34 1 9.0147 -2.0206 -1.0617 35 1 7.8783 -1.4026 0.1659 36 1 9.2518 -2.3310 1.9736 37 1 10.2933 -1.3427 0.9207 38 1 11.4020 -3.3298 2.6462 39 1 12.2864 -4.3347 1.4731 40 1 15.3594 -0.8398 2.1477 41 1 9.3503 -4.7179 1.8662 42 1 10.4652 -5.5191 0.7331 43 1 8.0517 -5.5897 -0.0122 44 1 9.1289 -4.7783 -1.1791 45 1 1.6851 -2.1399 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827483695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:49 Heat of formation + Delta-G solvation = 8.274332 kcal Electronic energy + Delta-G solvation = -25074.045239 eV Core-core repulsion = 21477.088551 eV Total energy + Delta-G solvation = -3596.956688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41654 -41.02701 -39.05983 -36.00470 -35.72875 -34.59180 -34.43146 -32.45110 -31.21956 -30.41722 -28.19336 -27.56306 -25.59140 -24.64490 -24.08553 -23.41239 -22.29936 -20.95983 -19.59314 -18.96751 -18.75543 -17.92001 -17.54985 -16.62840 -16.60582 -16.31821 -16.05816 -15.85537 -15.51987 -15.29835 -15.21197 -14.85427 -14.57334 -14.47631 -14.30212 -14.04695 -13.68879 -13.65109 -13.31274 -13.20584 -13.08226 -12.88073 -12.54833 -12.50603 -12.28508 -12.22327 -11.96242 -11.87546 -11.84431 -11.41951 -10.97790 -10.77655 -10.45338 -10.33026 -9.84176 -9.41680 -9.07310 -8.27851 -6.30765 -0.64610 0.22916 0.86723 1.34966 1.36139 1.45853 1.93318 2.19807 2.34012 2.85132 3.04259 3.13040 3.28334 3.46774 3.73381 3.86330 3.88823 3.95574 3.99184 4.01441 4.07654 4.21358 4.28442 4.33374 4.39733 4.55977 4.64602 4.72493 4.77550 4.79920 4.84088 4.85243 4.92012 4.94296 5.01457 5.09790 5.13811 5.20509 5.29925 5.35566 5.45540 5.52320 5.70441 5.92285 6.27276 6.37510 6.59438 6.75435 6.93914 7.05746 7.32753 8.87996 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020358 B = 0.002421 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.057823 B =11563.160274 C =12545.010824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.137 4.137 3 C 0.095 3.905 4 N -0.508 5.508 5 C 0.098 3.902 6 C -0.129 4.129 7 C -0.006 4.006 8 C -0.212 4.212 9 C 0.546 3.454 10 O -0.588 6.588 11 N -0.606 5.606 12 C 0.118 3.882 13 C 0.049 3.951 14 N -0.539 5.539 15 C 0.171 3.829 16 C -0.513 4.513 17 H 0.047 0.953 18 C 0.010 3.990 19 N -0.944 5.944 20 Si 0.942 3.058 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.256 1.256 24 C 0.041 3.959 25 C 0.123 3.877 26 C -0.060 4.060 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.178 0.822 31 H 0.168 0.832 32 H 0.137 0.863 33 H 0.153 0.847 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.023 0.977 37 H 0.080 0.920 38 H -0.016 1.016 39 H 0.030 0.970 40 H 0.266 0.734 41 H 0.022 0.978 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.688 -0.264 -3.518 28.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.139 4.139 3 C -0.062 4.062 4 N -0.216 5.216 5 C -0.059 4.059 6 C -0.131 4.131 7 C -0.026 4.026 8 C -0.232 4.232 9 C 0.338 3.662 10 O -0.471 6.471 11 N -0.337 5.337 12 C -0.004 4.004 13 C -0.080 4.080 14 N -0.263 5.263 15 C 0.044 3.956 16 C -0.551 4.551 17 H 0.065 0.935 18 C -0.187 4.187 19 N -0.585 5.585 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.180 1.180 24 C -0.088 4.088 25 C 0.001 3.999 26 C -0.086 4.086 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.195 0.805 31 H 0.185 0.815 32 H 0.155 0.845 33 H 0.170 0.830 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.041 0.959 37 H 0.098 0.902 38 H 0.002 0.998 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -28.182 0.105 -3.910 28.452 hybrid contribution 0.518 -1.047 1.484 1.888 sum -27.664 -0.942 -2.426 27.786 Atomic orbital electron populations 1.20810 0.87595 1.04483 1.03690 1.21222 0.99393 0.93230 1.00067 1.23321 0.89573 0.99128 0.94162 1.67675 1.09244 1.31853 1.12824 1.23344 1.01136 0.86998 0.94471 1.20034 0.94731 0.93898 1.04406 1.22230 0.93191 0.96874 0.90339 1.23024 0.94898 0.97655 1.07671 1.18676 0.81870 0.89899 0.75726 1.90754 1.71362 1.31987 1.52970 1.48184 1.05659 1.08609 1.71298 1.22155 0.93687 0.84574 1.00007 1.22451 0.93944 0.95204 0.96401 1.61817 1.07519 1.01963 1.55040 1.19946 0.89033 0.96633 0.89993 1.21213 1.05401 1.10482 1.18012 0.93522 1.25772 0.96321 0.96916 0.99719 1.70030 1.14444 1.30802 1.43209 0.85787 0.79019 0.79282 0.79258 1.19038 1.20884 1.17998 1.22504 0.95604 0.93597 0.97076 1.21676 0.91380 0.87442 0.99445 1.22062 0.92362 0.99954 0.94176 0.89823 0.89731 0.90192 0.80516 0.81513 0.84543 0.82996 0.89791 0.86577 0.95863 0.90176 0.99833 0.95156 0.92450 0.95934 0.88968 0.88849 0.89917 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.03 71.23 0.71 0.15 16 2 C -0.14 -1.61 5.89 -19.82 -0.12 -1.73 16 3 C 0.09 1.38 10.85 84.72 0.92 2.30 16 4 N -0.51 -10.15 10.34 -194.52 -2.01 -12.16 16 5 C 0.10 1.81 10.59 85.10 0.90 2.71 16 6 C -0.13 -2.17 5.88 -20.05 -0.12 -2.29 16 7 C -0.01 -0.11 9.48 23.84 0.23 0.12 16 8 C -0.21 -4.40 8.74 23.62 0.21 -4.20 16 9 C 0.55 15.19 7.62 86.38 0.66 15.85 16 10 O -0.59 -19.79 15.70 -4.35 -0.07 -19.86 16 11 N -0.61 -16.96 3.00 -822.07 -2.47 -19.42 16 12 C 0.12 3.11 6.50 86.50 0.56 3.67 16 13 C 0.05 1.72 5.47 86.54 0.47 2.19 16 14 N -0.54 -21.24 4.62 -898.92 -4.15 -25.39 16 15 C 0.17 7.97 3.79 85.56 0.32 8.30 16 16 C -0.51 -28.59 8.96 25.60 0.23 -28.36 16 17 H 0.05 2.86 7.37 -2.91 -0.02 2.84 16 18 C 0.01 0.59 5.47 84.65 0.46 1.06 16 19 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 20 Si 0.94 43.46 27.47 68.60 1.88 45.34 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 23 H -0.26 -11.18 6.54 99.48 0.65 -10.53 16 24 C 0.04 1.33 5.62 86.38 0.49 1.82 16 25 C 0.12 3.53 6.61 86.35 0.57 4.10 16 26 C -0.06 -0.80 9.62 22.78 0.22 -0.58 16 27 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.08 0.25 8.09 -2.39 -0.02 0.24 16 29 H 0.08 0.30 8.09 -2.39 -0.02 0.28 16 30 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 31 H 0.17 2.61 6.19 -2.91 -0.02 2.59 16 32 H 0.14 2.56 7.53 -2.91 -0.02 2.54 16 33 H 0.15 2.47 3.99 -2.91 -0.01 2.46 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.12 2.27 5.46 -2.39 -0.01 2.26 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 3.20 6.67 -2.39 -0.02 3.18 16 38 H -0.02 -0.76 7.18 -2.39 -0.02 -0.78 16 39 H 0.03 1.39 7.40 -2.39 -0.02 1.37 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 2.78 7.99 -2.38 -0.02 2.77 16 43 H 0.09 2.64 7.04 -2.39 -0.02 2.62 16 44 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -72.66 365.11 1.14 -71.52 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.94 Total: 12.32 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 6.72 Total: 5.10 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -8.33 Total: -114.43 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.07 Total: -19.86 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.34 kcal Total: -72.66 1.14 -71.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.799 kcal (2) G-P(sol) polarization free energy of solvation -72.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds