Wall clock time and date at job start Tue Mar 31 2020 11:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52577 * 1 3 3 C 1.51894 * 111.86078 * 2 1 4 4 C 1.52706 * 113.40567 * 94.91059 * 3 2 1 5 5 H 1.09704 * 111.79396 * 176.68832 * 4 3 2 6 6 C 1.54450 * 109.62899 * 300.63786 * 4 3 2 7 7 C 1.54349 * 104.43385 * 89.15150 * 6 4 3 8 8 C 1.54170 * 104.58743 * 0.78640 * 7 6 4 9 9 H 1.09695 * 111.52804 * 145.40279 * 8 7 6 10 10 C 1.51911 * 111.93784 * 130.05549 * 2 1 3 11 11 N 1.48160 * 108.18791 * 53.81237 * 4 3 2 12 12 C 1.34623 * 128.68403 * 106.18962 * 11 4 3 13 13 O 1.21578 * 120.00000 * 179.90499 * 12 11 4 14 14 N 1.34771 * 120.00084 * 359.91309 * 12 11 4 15 15 C 1.39454 * 120.00218 * 174.95979 * 14 12 11 16 16 C 1.38653 * 119.64910 * 185.35890 * 15 14 12 17 17 C 1.40816 * 118.67136 * 180.02562 * 16 15 14 18 18 C 1.41547 * 120.99593 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99758 * 331.68043 * 18 17 16 20 20 C 1.40026 * 120.00291 * 151.68341 * 18 17 16 21 21 N 1.30743 * 119.99974 * 350.17130 * 20 18 17 22 22 Si 1.86798 * 120.00393 * 170.17507 * 20 18 17 23 23 H 1.48502 * 109.46717 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47601 * 119.99637 * 22 20 18 25 25 H 1.48502 * 109.47129 * 240.00267 * 22 20 18 26 26 C 1.41156 * 118.00848 * 0.02562 * 17 16 15 27 27 C 1.36592 * 119.13076 * 359.97438 * 26 17 16 28 28 N 1.32072 * 121.25546 * 359.72205 * 27 26 17 29 29 H 1.09002 * 109.46460 * 289.95045 * 1 2 3 30 30 H 1.09000 * 109.47150 * 49.94594 * 1 2 3 31 31 H 1.08993 * 109.47180 * 169.94893 * 1 2 3 32 32 H 1.11923 * 105.63048 * 245.03930 * 2 1 3 33 33 H 1.09917 * 109.17454 * 216.70824 * 3 2 1 34 34 H 1.09946 * 109.13576 * 333.23288 * 3 2 1 35 35 H 1.09398 * 109.99141 * 206.97937 * 6 4 3 36 36 H 1.08522 * 111.33489 * 328.90149 * 6 4 3 37 37 H 1.08477 * 111.45882 * 239.98676 * 7 6 4 38 38 H 1.09560 * 109.63700 * 118.65101 * 7 6 4 39 39 H 1.09825 * 109.27895 * 144.64892 * 10 2 1 40 40 H 1.09881 * 109.21263 * 27.78501 * 10 2 1 41 41 H 0.97001 * 119.99848 * 354.96326 * 14 12 11 42 42 H 1.08001 * 120.66137 * 359.97438 * 16 15 14 43 43 H 0.97001 * 120.00145 * 180.02562 * 21 20 18 44 44 H 1.08008 * 120.44042 * 179.97438 * 26 17 16 45 45 H 1.08002 * 119.37226 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5258 0.0000 0.0000 3 6 2.0914 1.4097 0.0000 4 6 2.4286 1.9280 1.3963 5 1 2.8883 2.9235 1.3612 6 6 1.1558 1.9277 2.2712 7 6 1.1325 0.5255 2.9159 8 6 2.4012 -0.1687 2.3816 9 1 2.8405 -0.8373 3.1321 10 6 2.0933 -0.9068 1.0786 11 7 3.3234 0.9452 2.0508 12 6 4.6452 1.0385 2.2886 13 8 5.2286 0.1282 2.8445 14 7 5.3216 2.1412 1.9106 15 6 6.6668 2.2844 2.2494 16 6 7.3260 3.4681 1.9551 17 6 8.6843 3.5903 2.3058 18 6 9.4048 4.7768 2.0290 19 1 9.1217 5.3975 1.1918 20 6 10.4845 5.1458 2.8406 21 7 10.7097 4.5074 3.9592 22 14 11.6033 6.5502 2.3254 23 1 11.1375 7.1037 1.0285 24 1 11.5690 7.6153 3.3595 25 1 12.9929 6.0476 2.1781 26 6 9.3059 2.4940 2.9417 27 6 8.5745 1.3677 3.1909 28 7 7.3000 1.2896 2.8535 29 1 -0.3632 0.3507 0.9660 30 1 -0.3633 0.6613 -0.7866 31 1 -0.3633 -1.0118 -0.1793 32 1 1.8273 -0.4548 -0.9772 33 1 2.9982 1.4349 -0.6206 34 1 1.3648 2.0895 -0.4678 35 1 1.2363 2.6929 3.0489 36 1 0.2664 2.1026 1.6745 37 1 0.2343 -0.0201 2.6470 38 1 1.1890 0.6204 4.0059 39 1 3.0131 -1.3791 0.7082 40 1 1.3769 -1.7136 1.2865 41 1 4.8728 2.8353 1.4030 42 1 6.8083 4.2799 1.4658 43 1 11.4574 4.7632 4.5216 44 1 10.3463 2.5450 3.2274 45 1 9.0461 0.5267 3.6776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871735686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:18 Heat of formation + Delta-G solvation = 11.583124 kcal Electronic energy + Delta-G solvation = -26504.319227 eV Core-core repulsion = 22907.506018 eV Total energy + Delta-G solvation = -3596.813209 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96632 -39.08202 -37.53345 -34.42669 -34.12959 -33.52539 -31.54922 -31.27673 -30.61315 -28.53074 -27.58971 -25.95051 -24.55159 -23.39549 -21.77095 -21.69344 -20.64985 -20.21302 -18.54778 -17.87425 -17.39091 -16.22706 -15.83985 -15.14743 -14.97382 -14.71448 -14.20659 -14.03375 -13.96665 -13.87378 -13.56984 -13.51242 -13.24257 -12.90584 -12.80103 -12.60947 -12.35742 -12.17445 -11.92629 -11.81933 -11.41790 -11.27422 -11.18429 -10.95468 -10.67044 -10.56713 -10.41875 -10.36360 -10.32444 -9.97964 -9.69742 -9.48269 -9.37043 -8.41678 -7.96002 -7.67440 -6.97859 -6.73029 -4.59686 2.74545 2.79926 2.84538 3.04209 3.09181 3.25289 3.84895 3.88505 4.15852 4.38614 4.48031 4.58866 4.74152 4.80945 4.82761 4.94127 4.99276 5.13310 5.18612 5.37589 5.47317 5.47835 5.59871 5.61403 5.72581 5.74421 5.83445 5.88344 5.90704 6.00388 6.04515 6.11344 6.12429 6.19966 6.39954 6.62164 6.66160 6.82165 6.95658 7.17137 7.39417 7.47870 7.59501 7.92375 8.11818 8.37495 8.52720 8.76871 8.78501 9.19297 9.77071 10.14385 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028274 B = 0.002886 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.075177 B = 9700.021767 C =10147.558973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 C -0.120 4.120 4 C 0.131 3.869 5 H 0.087 0.913 6 C -0.127 4.127 7 C -0.129 4.129 8 C 0.157 3.843 9 H 0.096 0.904 10 C -0.119 4.119 11 N -0.640 5.640 12 C 0.718 3.282 13 O -0.529 6.529 14 N -0.668 5.668 15 C 0.366 3.634 16 C -0.304 4.304 17 C 0.149 3.851 18 C -0.458 4.458 19 H 0.080 0.920 20 C 0.076 3.924 21 N -0.793 5.793 22 Si 0.914 3.086 23 H -0.260 1.260 24 H -0.274 1.274 25 H -0.272 1.272 26 C -0.221 4.221 27 C 0.104 3.896 28 N -0.550 5.550 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.400 0.600 42 H 0.100 0.900 43 H 0.281 0.719 44 H 0.128 0.872 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.524 -3.503 -5.881 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 C -0.158 4.158 4 C 0.026 3.974 5 H 0.105 0.895 6 C -0.166 4.166 7 C -0.168 4.168 8 C 0.053 3.947 9 H 0.114 0.886 10 C -0.158 4.158 11 N -0.380 5.380 12 C 0.420 3.580 13 O -0.400 6.400 14 N -0.316 5.316 15 C 0.137 3.863 16 C -0.330 4.330 17 C 0.140 3.860 18 C -0.489 4.489 19 H 0.098 0.902 20 C -0.143 4.143 21 N -0.419 5.419 22 Si 0.739 3.261 23 H -0.184 1.184 24 H -0.199 1.199 25 H -0.197 1.197 26 C -0.244 4.244 27 C -0.047 4.047 28 N -0.270 5.270 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.235 0.765 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.146 0.854 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.244 -5.013 -5.027 19.577 hybrid contribution 0.779 1.901 -0.653 2.156 sum -17.465 -3.112 -5.680 18.627 Atomic orbital electron populations 1.22005 0.95013 1.01530 1.02128 1.20666 0.95277 0.95070 0.98795 1.21797 1.01421 0.96301 0.96329 1.21955 0.90408 0.92828 0.92187 0.89468 1.22519 0.97397 0.97515 0.99119 1.22504 0.97612 0.96038 1.00599 1.21784 0.88090 0.88785 0.96067 0.88554 1.21782 1.01386 0.97573 0.95029 1.48375 1.05438 1.20615 1.63587 1.15449 0.79223 0.83369 0.79988 1.91023 1.65657 1.37919 1.45370 1.42577 1.09789 1.21278 1.57994 1.17784 0.82392 0.91024 0.95065 1.21200 0.96112 0.97277 1.18447 1.17584 0.89305 0.92227 0.86860 1.19568 1.11103 1.06072 1.12185 0.90156 1.25944 0.96930 0.97674 0.93742 1.69768 1.26079 1.37057 1.08949 0.86162 0.79757 0.80402 0.79800 1.18404 1.19907 1.19667 1.22002 1.01612 0.93501 1.07295 1.21638 0.89153 0.96692 0.97177 1.67224 1.10639 1.29461 1.19630 0.91924 0.92780 0.92831 0.92673 0.91915 0.91103 0.91376 0.90200 0.90054 0.91436 0.91710 0.91272 0.76538 0.88146 0.90761 0.85442 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.60 36.94 0.32 -0.68 16 2 C -0.08 -0.70 2.29 -91.95 -0.21 -0.91 16 3 C -0.12 -1.11 5.03 -27.44 -0.14 -1.24 16 4 C 0.13 1.39 3.77 -66.41 -0.25 1.14 16 5 H 0.09 0.88 6.97 -51.53 -0.36 0.52 16 6 C -0.13 -1.10 5.86 -25.26 -0.15 -1.24 16 7 C -0.13 -1.18 5.81 -25.41 -0.15 -1.32 16 8 C 0.16 1.91 3.89 -66.36 -0.26 1.65 16 9 H 0.10 1.35 7.96 -51.53 -0.41 0.94 16 10 C -0.12 -1.24 5.08 -27.34 -0.14 -1.37 16 11 N -0.64 -9.37 2.75 -159.76 -0.44 -9.81 16 12 C 0.72 14.40 8.55 -87.06 -0.74 13.65 16 13 O -0.53 -13.06 14.91 5.30 0.08 -12.98 16 14 N -0.67 -13.30 5.37 -15.90 -0.09 -13.39 16 15 C 0.37 8.96 7.42 -154.68 -1.15 7.81 16 16 C -0.30 -7.49 9.74 -38.45 -0.37 -7.86 16 17 C 0.15 3.98 5.58 -106.55 -0.59 3.38 16 18 C -0.46 -11.91 9.13 -37.65 -0.34 -12.26 16 19 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 20 C 0.08 1.86 5.30 -17.35 -0.09 1.77 16 21 N -0.79 -20.27 10.83 55.55 0.60 -19.66 16 22 Si 0.91 18.28 29.57 -169.99 -5.03 13.25 16 23 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 C -0.22 -5.86 8.71 -39.07 -0.34 -6.20 16 27 C 0.10 2.68 11.10 -18.04 -0.20 2.48 16 28 N -0.55 -14.66 7.86 -12.75 -0.10 -14.76 16 29 H 0.06 0.39 4.39 -51.93 -0.23 0.16 16 30 H 0.05 0.33 7.96 -51.93 -0.41 -0.09 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.50 8.30 -50.23 -0.42 0.09 16 33 H 0.06 0.66 8.22 -51.41 -0.42 0.24 16 34 H 0.07 0.51 7.80 -51.39 -0.40 0.11 16 35 H 0.07 0.61 8.18 -51.70 -0.42 0.18 16 36 H 0.08 0.53 6.67 -52.20 -0.35 0.19 16 37 H 0.08 0.58 6.26 -52.22 -0.33 0.25 16 38 H 0.07 0.64 8.19 -51.61 -0.42 0.22 16 39 H 0.06 0.81 8.21 -51.46 -0.42 0.39 16 40 H 0.07 0.59 7.94 -51.43 -0.41 0.18 16 41 H 0.40 6.41 7.17 -40.82 -0.29 6.12 16 42 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 43 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 44 H 0.13 3.42 6.27 -52.48 -0.33 3.09 16 45 H 0.12 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 349.36 15.07 5.26 5.26 Total: -1.00 -32.54 349.36 -10.96 -43.49 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -6.44 Total: 9.80 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -4.81 Total: -1.20 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.02 Total: -57.62 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.54 -10.96 -43.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871735686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.075 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds