Wall clock time and date at job start Tue Mar 31 2020 11:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52577 * 1 3 3 C 1.51894 * 111.86078 * 2 1 4 4 C 1.52706 * 113.40567 * 94.91059 * 3 2 1 5 5 H 1.09704 * 111.79396 * 176.68832 * 4 3 2 6 6 C 1.54450 * 109.62899 * 300.63786 * 4 3 2 7 7 C 1.54349 * 104.43385 * 89.15150 * 6 4 3 8 8 C 1.54170 * 104.58743 * 0.78640 * 7 6 4 9 9 H 1.09695 * 111.52804 * 145.40279 * 8 7 6 10 10 C 1.51911 * 111.93784 * 130.05549 * 2 1 3 11 11 N 1.48160 * 108.18791 * 53.81237 * 4 3 2 12 12 C 1.34623 * 128.68403 * 106.18962 * 11 4 3 13 13 O 1.21578 * 120.00000 * 179.90499 * 12 11 4 14 14 N 1.34771 * 120.00084 * 359.91309 * 12 11 4 15 15 C 1.39454 * 120.00218 * 174.95979 * 14 12 11 16 16 C 1.38653 * 119.64910 * 185.35890 * 15 14 12 17 17 C 1.40816 * 118.67136 * 180.02562 * 16 15 14 18 18 C 1.41547 * 120.99593 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99758 * 331.68043 * 18 17 16 20 20 C 1.40026 * 120.00291 * 151.68341 * 18 17 16 21 21 N 1.30743 * 119.99974 * 350.17130 * 20 18 17 22 22 Si 1.86798 * 120.00393 * 170.17507 * 20 18 17 23 23 H 1.48502 * 109.46717 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47601 * 119.99637 * 22 20 18 25 25 H 1.48502 * 109.47129 * 240.00267 * 22 20 18 26 26 C 1.41156 * 118.00848 * 0.02562 * 17 16 15 27 27 C 1.36592 * 119.13076 * 359.97438 * 26 17 16 28 28 N 1.32072 * 121.25546 * 359.72205 * 27 26 17 29 29 H 1.09002 * 109.46460 * 289.95045 * 1 2 3 30 30 H 1.09000 * 109.47150 * 49.94594 * 1 2 3 31 31 H 1.08993 * 109.47180 * 169.94893 * 1 2 3 32 32 H 1.11923 * 105.63048 * 245.03930 * 2 1 3 33 33 H 1.09917 * 109.17454 * 216.70824 * 3 2 1 34 34 H 1.09946 * 109.13576 * 333.23288 * 3 2 1 35 35 H 1.09398 * 109.99141 * 206.97937 * 6 4 3 36 36 H 1.08522 * 111.33489 * 328.90149 * 6 4 3 37 37 H 1.08477 * 111.45882 * 239.98676 * 7 6 4 38 38 H 1.09560 * 109.63700 * 118.65101 * 7 6 4 39 39 H 1.09825 * 109.27895 * 144.64892 * 10 2 1 40 40 H 1.09881 * 109.21263 * 27.78501 * 10 2 1 41 41 H 0.97001 * 119.99848 * 354.96326 * 14 12 11 42 42 H 1.08001 * 120.66137 * 359.97438 * 16 15 14 43 43 H 0.97001 * 120.00145 * 180.02562 * 21 20 18 44 44 H 1.08008 * 120.44042 * 179.97438 * 26 17 16 45 45 H 1.08002 * 119.37226 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5258 0.0000 0.0000 3 6 2.0914 1.4097 0.0000 4 6 2.4286 1.9280 1.3963 5 1 2.8883 2.9235 1.3612 6 6 1.1558 1.9277 2.2712 7 6 1.1325 0.5255 2.9159 8 6 2.4012 -0.1687 2.3816 9 1 2.8405 -0.8373 3.1321 10 6 2.0933 -0.9068 1.0786 11 7 3.3234 0.9452 2.0508 12 6 4.6452 1.0385 2.2886 13 8 5.2286 0.1282 2.8445 14 7 5.3216 2.1412 1.9106 15 6 6.6668 2.2844 2.2494 16 6 7.3260 3.4681 1.9551 17 6 8.6843 3.5903 2.3058 18 6 9.4048 4.7768 2.0290 19 1 9.1217 5.3975 1.1918 20 6 10.4845 5.1458 2.8406 21 7 10.7097 4.5074 3.9592 22 14 11.6033 6.5502 2.3254 23 1 11.1375 7.1037 1.0285 24 1 11.5690 7.6153 3.3595 25 1 12.9929 6.0476 2.1781 26 6 9.3059 2.4940 2.9417 27 6 8.5745 1.3677 3.1909 28 7 7.3000 1.2896 2.8535 29 1 -0.3632 0.3507 0.9660 30 1 -0.3633 0.6613 -0.7866 31 1 -0.3633 -1.0118 -0.1793 32 1 1.8273 -0.4548 -0.9772 33 1 2.9982 1.4349 -0.6206 34 1 1.3648 2.0895 -0.4678 35 1 1.2363 2.6929 3.0489 36 1 0.2664 2.1026 1.6745 37 1 0.2343 -0.0201 2.6470 38 1 1.1890 0.6204 4.0059 39 1 3.0131 -1.3791 0.7082 40 1 1.3769 -1.7136 1.2865 41 1 4.8728 2.8353 1.4030 42 1 6.8083 4.2799 1.4658 43 1 11.4574 4.7632 4.5216 44 1 10.3463 2.5450 3.2274 45 1 9.0461 0.5267 3.6776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871735686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:17 Heat of formation + Delta-G solvation = -6.680558 kcal Electronic energy + Delta-G solvation = -26505.111199 eV Core-core repulsion = 22907.506018 eV Total energy + Delta-G solvation = -3597.605181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.07951 -40.72165 -39.22899 -36.24985 -35.41899 -34.92084 -32.60591 -32.53157 -32.28343 -30.18618 -28.47693 -27.91111 -25.35221 -24.63188 -23.67255 -23.13216 -21.67430 -21.42944 -20.04216 -19.57511 -18.47650 -17.68569 -17.15645 -16.87419 -16.38266 -16.24481 -16.02944 -15.73081 -14.95868 -14.87582 -14.67226 -14.59936 -14.28754 -14.21551 -14.18614 -14.05098 -13.57137 -13.38144 -13.16264 -12.88948 -12.84765 -12.55119 -12.53685 -12.12682 -12.00853 -11.83440 -11.53159 -11.44099 -11.32038 -11.26626 -11.22273 -11.14057 -11.07979 -9.96632 -9.64677 -9.62975 -8.85378 -8.61068 -6.59704 0.80721 0.97441 1.40752 1.47117 1.55405 1.57200 2.19990 2.25732 2.83131 2.86986 3.55382 3.59264 3.72163 3.80331 4.01726 4.04034 4.09793 4.18597 4.28310 4.30856 4.39972 4.53363 4.67632 4.80280 4.82840 4.84629 4.88133 4.90222 4.97163 5.02453 5.06453 5.08225 5.11894 5.22368 5.24365 5.27480 5.38983 5.42077 5.47517 5.52354 5.58336 5.63096 5.94515 6.00277 6.23429 6.52243 6.78430 6.81975 6.93006 7.56801 7.88578 8.29554 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028274 B = 0.002886 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.075177 B = 9700.021767 C =10147.558973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 C -0.118 4.118 4 C 0.121 3.879 5 H 0.092 0.908 6 C -0.119 4.119 7 C -0.120 4.120 8 C 0.146 3.854 9 H 0.066 0.934 10 C -0.114 4.114 11 N -0.636 5.636 12 C 0.711 3.289 13 O -0.586 6.586 14 N -0.658 5.658 15 C 0.364 3.636 16 C -0.311 4.311 17 C 0.122 3.878 18 C -0.482 4.482 19 H 0.088 0.912 20 C 0.033 3.967 21 N -0.822 5.822 22 Si 0.994 3.006 23 H -0.253 1.253 24 H -0.266 1.266 25 H -0.265 1.265 26 C -0.239 4.239 27 C 0.097 3.903 28 N -0.579 5.579 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.061 0.939 39 H 0.030 0.970 40 H 0.093 0.907 41 H 0.418 0.582 42 H 0.123 0.877 43 H 0.291 0.709 44 H 0.118 0.882 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.076 -1.693 -7.154 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 C -0.156 4.156 4 C 0.018 3.982 5 H 0.110 0.890 6 C -0.157 4.157 7 C -0.158 4.158 8 C 0.042 3.958 9 H 0.084 0.916 10 C -0.152 4.152 11 N -0.375 5.375 12 C 0.413 3.587 13 O -0.461 6.461 14 N -0.308 5.308 15 C 0.134 3.866 16 C -0.338 4.338 17 C 0.113 3.887 18 C -0.513 4.513 19 H 0.106 0.894 20 C -0.183 4.183 21 N -0.448 5.448 22 Si 0.814 3.186 23 H -0.177 1.177 24 H -0.190 1.190 25 H -0.190 1.190 26 C -0.262 4.262 27 C -0.053 4.053 28 N -0.299 5.299 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.111 0.889 41 H 0.256 0.744 42 H 0.141 0.859 43 H 0.102 0.898 44 H 0.136 0.864 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.899 -3.192 -6.333 22.069 hybrid contribution 1.504 1.282 -0.245 1.992 sum -19.395 -1.910 -6.578 20.569 Atomic orbital electron populations 1.21960 0.92467 1.02443 1.03188 1.20672 0.97214 0.94239 0.97537 1.21813 1.01563 0.97271 0.94982 1.22363 0.90506 0.92082 0.93244 0.88962 1.22540 0.97242 0.96878 0.99029 1.22491 0.96690 0.96395 1.00209 1.22066 0.88779 0.88308 0.96618 0.91594 1.21755 1.00628 0.98375 0.94457 1.48393 1.04015 1.22537 1.62547 1.15639 0.80804 0.82563 0.79672 1.90972 1.67593 1.39673 1.47886 1.42405 1.08377 1.22033 1.57954 1.18044 0.83939 0.90555 0.94013 1.21377 0.95700 0.98022 1.18658 1.17994 0.90490 0.92779 0.87400 1.19893 1.12315 1.06172 1.12924 0.89390 1.26917 0.97799 1.00347 0.93201 1.69830 1.26716 1.38444 1.09831 0.84980 0.77328 0.76685 0.79628 1.17662 1.19048 1.18974 1.21958 1.01305 0.94170 1.08784 1.21897 0.89292 0.97074 0.97068 1.67324 1.10971 1.30673 1.20915 0.90913 0.91473 0.92235 0.93137 0.93836 0.87875 0.91407 0.86879 0.87013 0.92021 0.95065 0.88908 0.74444 0.85888 0.89815 0.86394 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.60 71.84 0.62 -0.65 16 2 C -0.08 -1.18 2.29 -11.66 -0.03 -1.21 16 3 C -0.12 -1.87 5.03 30.13 0.15 -1.72 16 4 C 0.12 2.32 3.77 45.07 0.17 2.49 16 5 H 0.09 1.68 6.97 -2.01 -0.01 1.66 16 6 C -0.12 -1.63 5.86 31.54 0.18 -1.44 16 7 C -0.12 -1.88 5.81 31.45 0.18 -1.69 16 8 C 0.15 3.52 3.89 45.00 0.18 3.70 16 9 H 0.07 1.97 7.96 -2.02 -0.02 1.96 16 10 C -0.11 -2.27 5.08 30.20 0.15 -2.12 16 11 N -0.64 -18.71 2.75 -777.70 -2.14 -20.85 16 12 C 0.71 29.55 8.55 179.10 1.53 31.08 16 13 O -0.59 -30.56 14.91 -3.96 -0.06 -30.62 16 14 N -0.66 -26.71 5.37 -322.49 -1.73 -28.44 16 15 C 0.36 18.33 7.42 132.77 0.99 19.32 16 16 C -0.31 -15.61 9.74 23.00 0.22 -15.39 16 17 C 0.12 6.69 5.58 -21.12 -0.12 6.57 16 18 C -0.48 -25.30 9.13 23.52 0.21 -25.09 16 19 H 0.09 4.34 7.87 -2.91 -0.02 4.31 16 20 C 0.03 1.64 5.30 85.29 0.45 2.09 16 21 N -0.82 -42.52 10.83 21.84 0.24 -42.29 16 22 Si 0.99 36.79 29.57 68.60 2.03 38.81 16 23 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 24 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 25 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 26 C -0.24 -13.20 8.71 22.60 0.20 -13.00 16 27 C 0.10 5.24 11.10 84.27 0.94 6.18 16 28 N -0.58 -32.14 7.86 -194.26 -1.53 -33.67 16 29 H 0.07 0.51 4.39 -2.39 -0.01 0.50 16 30 H 0.07 0.47 7.96 -2.39 -0.02 0.45 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.83 8.30 -0.79 -0.01 0.83 16 33 H 0.04 0.86 8.22 -1.90 -0.02 0.84 16 34 H 0.10 1.04 7.80 -1.88 -0.01 1.02 16 35 H 0.07 0.98 8.18 -2.18 -0.02 0.97 16 36 H 0.11 0.88 6.67 -2.64 -0.02 0.86 16 37 H 0.11 1.11 6.26 -2.66 -0.02 1.09 16 38 H 0.06 1.07 8.19 -2.09 -0.02 1.05 16 39 H 0.03 0.81 8.21 -1.95 -0.02 0.80 16 40 H 0.09 1.40 7.94 -1.92 -0.02 1.39 16 41 H 0.42 13.30 7.17 -92.71 -0.66 12.63 16 42 H 0.12 5.41 8.06 -2.91 -0.02 5.39 16 43 H 0.29 13.50 8.29 -92.71 -0.77 12.73 16 44 H 0.12 6.62 6.27 -2.91 -0.02 6.60 16 45 H 0.14 6.65 8.06 -2.91 -0.02 6.63 16 Total: -1.00 -74.80 349.36 3.23 -71.57 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: 0.38 Total: 36.36 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 6.03 Total: 9.12 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -5.16 Total: -125.24 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.06 Total: -30.62 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.81 kcal Total: -74.80 3.23 -71.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871735686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.891 kcal (2) G-P(sol) polarization free energy of solvation -74.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds