Wall clock time and date at job start Tue Mar 31 2020 11:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35238 * 126.07137 * 2 1 4 4 C 1.40407 * 107.87157 * 180.02562 * 3 2 1 5 5 N 1.40159 * 125.97504 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00025 * 0.02562 * 5 4 3 7 7 O 1.21297 * 119.99620 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99822 * 179.97438 * 6 5 4 9 9 H 1.09000 * 115.48170 * 325.30730 * 8 6 5 10 10 C 1.53001 * 117.42670 * 110.62439 * 8 6 5 11 11 H 1.08996 * 120.51288 * 355.45711 * 10 8 6 12 12 C 1.53009 * 117.42665 * 180.02562 * 8 6 5 13 13 H 1.09006 * 120.51326 * 4.53379 * 12 8 6 14 14 C 1.55927 * 117.17162 * 160.66530 * 12 8 6 15 15 H 1.09001 * 115.92098 * 263.04630 * 14 12 8 16 16 C 1.55929 * 104.49669 * 134.16715 * 14 12 8 17 17 C 1.56528 * 103.72216 * 289.18396 * 16 14 12 18 18 C 1.55923 * 117.17344 * 199.33047 * 10 8 6 19 19 H 1.09007 * 116.52827 * 97.31540 * 18 10 8 20 20 C 1.56950 * 100.65335 * 29.30086 * 14 12 8 21 21 N 1.31215 * 108.05024 * 0.22978 * 4 3 2 22 22 N 1.34968 * 126.07154 * 180.02562 * 2 1 3 23 23 C 1.46503 * 125.97425 * 359.97438 * 22 2 1 24 24 C 1.50699 * 109.46863 * 90.00150 * 23 22 2 25 25 H 1.07998 * 120.00459 * 0.02562 * 24 23 22 26 26 C 1.37881 * 120.00110 * 180.02562 * 24 23 22 27 27 N 1.31519 * 119.99857 * 359.97438 * 26 24 23 28 28 Si 1.86799 * 120.00226 * 180.02562 * 26 24 23 29 29 H 1.48497 * 109.47542 * 89.99288 * 28 26 24 30 30 H 1.48494 * 109.47168 * 209.99853 * 28 26 24 31 31 H 1.48499 * 109.46947 * 329.99159 * 28 26 24 32 32 H 1.09000 * 109.46785 * 89.97882 * 1 2 3 33 33 H 1.09005 * 109.46882 * 209.97209 * 1 2 3 34 34 H 1.08997 * 109.47050 * 329.97437 * 1 2 3 35 35 H 1.08004 * 126.06357 * 0.02562 * 3 2 1 36 36 H 0.96998 * 119.99875 * 179.97438 * 5 4 3 37 37 H 1.09004 * 110.40284 * 48.51177 * 16 14 12 38 38 H 1.08994 * 110.40254 * 170.92644 * 16 14 12 39 39 H 1.08999 * 110.54193 * 241.43167 * 17 16 14 40 40 H 1.09006 * 110.18023 * 119.18580 * 17 16 14 41 41 H 1.08996 * 112.02591 * 170.30091 * 20 14 12 42 42 H 1.09002 * 112.02493 * 296.82566 * 20 14 12 43 43 H 1.09003 * 109.47468 * 210.00112 * 23 22 2 44 44 H 1.09001 * 109.47400 * 330.00479 * 23 22 2 45 45 H 0.96997 * 120.00175 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6546 -0.0006 5 7 4.7735 1.4749 -0.0013 6 6 4.6367 2.8158 -0.0009 7 8 3.5301 3.3124 -0.0005 8 6 5.8586 3.6978 -0.0011 9 1 6.7125 3.3161 0.5586 10 6 6.1496 4.4984 -1.2720 11 1 5.5329 4.3685 -2.1613 12 6 5.6352 5.2114 0.0000 13 1 4.6283 5.6222 0.0750 14 6 6.8264 6.1067 0.4591 15 1 6.8061 6.4297 1.5000 16 6 6.8935 7.2435 -0.6061 17 6 7.4211 6.5190 -1.8895 18 6 7.6031 5.0303 -1.4613 19 1 8.2630 4.4309 -2.0885 20 6 8.0431 5.2109 0.0344 21 7 3.6337 -0.6576 -0.0059 22 7 2.3017 -1.0909 -0.0005 23 6 1.8501 -2.4846 -0.0006 24 6 1.6948 -2.9622 -1.4214 25 1 1.9112 -2.2945 -2.2423 26 6 1.2763 -4.2515 -1.6736 27 7 1.0132 -5.0648 -0.6740 28 14 1.0845 -4.8437 -3.4348 29 1 2.3653 -5.4328 -3.9013 30 1 0.0148 -5.8718 -3.4976 31 1 0.7206 -3.6972 -4.3056 32 1 -0.3633 0.0004 -1.0277 33 1 -0.3633 -0.8903 0.5134 34 1 -0.3633 0.8897 0.5142 35 1 1.9719 2.1211 0.0004 36 1 5.6584 1.0777 -0.0013 37 1 5.9036 7.6693 -0.7704 38 1 7.5937 8.0175 -0.2922 39 1 8.3747 6.9433 -2.2035 40 1 6.6886 6.5965 -2.6930 41 1 8.9912 5.7418 0.1202 42 1 8.0604 4.2631 0.5724 43 1 2.5849 -3.1048 0.5129 44 1 0.8916 -2.5560 0.5135 45 1 0.7191 -5.9719 -0.8513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935184761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:14 Heat of formation + Delta-G solvation = 77.556971 kcal Electronic energy + Delta-G solvation = -25524.388045 eV Core-core repulsion = 21930.435678 eV Total energy + Delta-G solvation = -3593.952368 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.61830 -40.58602 -38.91600 -34.83935 -33.72863 -33.32947 -31.42409 -30.82293 -29.29965 -28.34281 -26.88311 -26.35229 -25.02429 -22.89744 -21.99528 -21.40623 -19.79993 -19.70921 -18.93640 -18.82617 -17.28543 -16.69299 -16.24505 -16.15590 -15.66385 -15.34036 -14.96738 -14.63298 -14.18386 -13.98802 -13.32180 -13.13619 -12.91173 -12.69361 -12.48374 -12.28447 -12.17122 -11.81282 -11.76262 -11.66982 -11.61303 -11.47074 -11.39993 -11.18823 -11.07895 -10.83455 -10.65032 -10.44313 -10.24294 -10.14193 -9.91889 -9.88147 -9.54018 -9.52127 -8.64518 -7.93370 -7.45246 -6.25775 -4.33309 2.21569 2.72593 2.86690 3.21481 3.27623 3.32428 3.45639 3.72836 3.82043 4.12353 4.14059 4.20486 4.30780 4.66760 4.70964 4.80597 4.81942 4.92490 4.95189 5.07991 5.09586 5.14165 5.24985 5.44636 5.45566 5.62230 5.63895 5.71585 5.74829 5.78698 5.81272 5.91276 5.92776 5.99461 6.05978 6.11117 6.26177 6.44630 6.55492 6.73372 6.93203 7.05302 7.46100 7.65980 7.67832 7.88705 8.05216 8.29098 8.65461 8.75012 9.32932 10.81529 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.002482 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.624192 B =11280.694191 C =11720.527775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.290 4.290 4 C 0.263 3.737 5 N -0.627 5.627 6 C 0.550 3.450 7 O -0.516 6.516 8 C -0.161 4.161 9 H 0.128 0.872 10 C -0.135 4.135 11 H 0.118 0.882 12 C -0.125 4.125 13 H 0.125 0.875 14 C -0.075 4.075 15 H 0.101 0.899 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.073 4.073 19 H 0.103 0.897 20 C -0.139 4.139 21 N -0.320 5.320 22 N -0.317 5.317 23 C 0.258 3.742 24 C -0.535 4.535 25 H 0.064 0.936 26 C 0.065 3.935 27 N -0.892 5.892 28 Si 0.906 3.094 29 H -0.278 1.278 30 H -0.283 1.283 31 H -0.272 1.272 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.159 0.841 36 H 0.411 0.589 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.905 21.807 1.510 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.321 4.321 4 C 0.011 3.989 5 N -0.273 5.273 6 C 0.336 3.664 7 O -0.390 6.390 8 C -0.182 4.182 9 H 0.145 0.855 10 C -0.154 4.154 11 H 0.136 0.864 12 C -0.143 4.143 13 H 0.143 0.857 14 C -0.093 4.093 15 H 0.119 0.881 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.091 4.091 19 H 0.121 0.879 20 C -0.176 4.176 21 N -0.151 5.151 22 N -0.099 5.099 23 C 0.141 3.859 24 C -0.574 4.574 25 H 0.082 0.918 26 C -0.138 4.138 27 N -0.530 5.530 28 Si 0.733 3.267 29 H -0.203 1.203 30 H -0.209 1.209 31 H -0.197 1.197 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.176 0.824 36 H 0.246 0.754 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.720 20.827 1.546 23.948 hybrid contribution -0.125 -0.225 -0.955 0.990 sum 11.595 20.601 0.591 23.648 Atomic orbital electron populations 1.20333 0.87869 1.02825 1.03175 1.21068 0.94919 0.87175 1.00875 1.21234 0.89746 0.99756 1.21410 1.18998 0.87249 0.89598 1.03090 1.42391 1.07543 1.04960 1.72453 1.19542 0.89873 0.81131 0.75900 1.90639 1.26561 1.73960 1.47882 1.22232 0.98220 0.93571 1.04203 0.85479 1.23617 0.98110 1.01765 0.91888 0.86370 1.23613 1.00086 0.89753 1.00868 0.85667 1.23193 0.92769 0.94705 0.98615 0.88121 1.22860 1.01230 0.96764 0.94604 1.22861 1.00934 0.94107 0.97619 1.23185 0.93522 0.95755 0.96670 0.87901 1.23772 0.97936 0.99993 0.95864 1.77257 0.99917 1.08499 1.29417 1.48997 1.00982 1.07789 1.52151 1.19692 0.95979 0.71312 0.98947 1.21318 1.46728 0.97972 0.91368 0.91783 1.24931 0.94671 0.96073 0.98132 1.69920 1.44970 1.07082 1.31020 0.86350 0.78011 0.78574 0.83727 1.20339 1.20861 1.19664 0.90419 0.90837 0.90826 0.82404 0.75406 0.91245 0.91579 0.91543 0.91506 0.90703 0.90484 0.93007 0.92770 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.11 36.00 0.36 -1.09 16 2 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 3 C -0.29 -6.11 9.52 -39.83 -0.38 -6.49 16 4 C 0.26 5.47 8.11 -154.39 -1.25 4.22 16 5 N -0.63 -10.02 5.45 -11.13 -0.06 -10.08 16 6 C 0.55 8.18 7.58 -10.99 -0.08 8.09 16 7 O -0.52 -9.32 13.50 5.54 0.07 -9.25 16 8 C -0.16 -1.68 5.39 -91.77 -0.49 -2.17 16 9 H 0.13 1.06 6.01 -51.93 -0.31 0.75 16 10 C -0.14 -1.26 6.20 -88.20 -0.55 -1.81 16 11 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 12 C -0.12 -1.20 5.91 -88.20 -0.52 -1.72 16 13 H 0.13 1.39 7.85 -51.93 -0.41 0.98 16 14 C -0.07 -0.54 5.12 -85.35 -0.44 -0.97 16 15 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 16 C -0.12 -0.76 6.36 -23.27 -0.15 -0.91 16 17 C -0.12 -0.77 6.25 -23.24 -0.15 -0.91 16 18 C -0.07 -0.52 5.18 -85.33 -0.44 -0.96 16 19 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 20 C -0.14 -0.91 6.24 -22.45 -0.14 -1.05 16 21 N -0.32 -7.52 12.59 31.44 0.40 -7.12 16 22 N -0.32 -7.63 3.59 -58.32 -0.21 -7.84 16 23 C 0.26 6.69 5.99 -5.19 -0.03 6.66 16 24 C -0.54 -14.87 9.39 -34.44 -0.32 -15.19 16 25 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 26 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 27 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 28 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 31 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.28 7.07 -51.93 -0.37 0.91 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.16 3.24 5.92 -52.48 -0.31 2.93 16 36 H 0.41 5.32 8.82 -40.82 -0.36 4.96 16 37 H 0.07 0.47 8.04 -51.93 -0.42 0.06 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.46 8.05 -51.93 -0.42 0.05 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.50 5.92 -51.93 -0.31 0.19 16 43 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 44 H 0.05 1.38 7.04 -51.93 -0.37 1.02 16 45 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -32.11 363.12 -10.47 -42.59 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.62 Total: 5.69 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -5.25 Total: -11.23 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.86 Total: -49.47 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.07 Total: -9.25 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.11 -10.47 -42.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935184761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.143 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds