Wall clock time and date at job start Tue Mar 31 2020 11:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35238 * 126.07137 * 2 1 4 4 C 1.40407 * 107.87157 * 180.02562 * 3 2 1 5 5 N 1.40159 * 125.97504 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00025 * 0.02562 * 5 4 3 7 7 O 1.21297 * 119.99620 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99822 * 179.97438 * 6 5 4 9 9 H 1.09000 * 115.48170 * 325.30730 * 8 6 5 10 10 C 1.53001 * 117.42670 * 110.62439 * 8 6 5 11 11 H 1.08996 * 120.51288 * 355.45711 * 10 8 6 12 12 C 1.53009 * 117.42665 * 180.02562 * 8 6 5 13 13 H 1.09006 * 120.51326 * 4.53379 * 12 8 6 14 14 C 1.55927 * 117.17162 * 160.66530 * 12 8 6 15 15 H 1.09001 * 115.92098 * 263.04630 * 14 12 8 16 16 C 1.55929 * 104.49669 * 134.16715 * 14 12 8 17 17 C 1.56528 * 103.72216 * 289.18396 * 16 14 12 18 18 C 1.55923 * 117.17344 * 199.33047 * 10 8 6 19 19 H 1.09007 * 116.52827 * 97.31540 * 18 10 8 20 20 C 1.56950 * 100.65335 * 29.30086 * 14 12 8 21 21 N 1.31215 * 108.05024 * 0.22978 * 4 3 2 22 22 N 1.34968 * 126.07154 * 180.02562 * 2 1 3 23 23 C 1.46503 * 125.97425 * 359.97438 * 22 2 1 24 24 C 1.50699 * 109.46863 * 90.00150 * 23 22 2 25 25 H 1.07998 * 120.00459 * 0.02562 * 24 23 22 26 26 C 1.37881 * 120.00110 * 180.02562 * 24 23 22 27 27 N 1.31519 * 119.99857 * 359.97438 * 26 24 23 28 28 Si 1.86799 * 120.00226 * 180.02562 * 26 24 23 29 29 H 1.48497 * 109.47542 * 89.99288 * 28 26 24 30 30 H 1.48494 * 109.47168 * 209.99853 * 28 26 24 31 31 H 1.48499 * 109.46947 * 329.99159 * 28 26 24 32 32 H 1.09000 * 109.46785 * 89.97882 * 1 2 3 33 33 H 1.09005 * 109.46882 * 209.97209 * 1 2 3 34 34 H 1.08997 * 109.47050 * 329.97437 * 1 2 3 35 35 H 1.08004 * 126.06357 * 0.02562 * 3 2 1 36 36 H 0.96998 * 119.99875 * 179.97438 * 5 4 3 37 37 H 1.09004 * 110.40284 * 48.51177 * 16 14 12 38 38 H 1.08994 * 110.40254 * 170.92644 * 16 14 12 39 39 H 1.08999 * 110.54193 * 241.43167 * 17 16 14 40 40 H 1.09006 * 110.18023 * 119.18580 * 17 16 14 41 41 H 1.08996 * 112.02591 * 170.30091 * 20 14 12 42 42 H 1.09002 * 112.02493 * 296.82566 * 20 14 12 43 43 H 1.09003 * 109.47468 * 210.00112 * 23 22 2 44 44 H 1.09001 * 109.47400 * 330.00479 * 23 22 2 45 45 H 0.96997 * 120.00175 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6546 -0.0006 5 7 4.7735 1.4749 -0.0013 6 6 4.6367 2.8158 -0.0009 7 8 3.5301 3.3124 -0.0005 8 6 5.8586 3.6978 -0.0011 9 1 6.7125 3.3161 0.5586 10 6 6.1496 4.4984 -1.2720 11 1 5.5329 4.3685 -2.1613 12 6 5.6352 5.2114 0.0000 13 1 4.6283 5.6222 0.0750 14 6 6.8264 6.1067 0.4591 15 1 6.8061 6.4297 1.5000 16 6 6.8935 7.2435 -0.6061 17 6 7.4211 6.5190 -1.8895 18 6 7.6031 5.0303 -1.4613 19 1 8.2630 4.4309 -2.0885 20 6 8.0431 5.2109 0.0344 21 7 3.6337 -0.6576 -0.0059 22 7 2.3017 -1.0909 -0.0005 23 6 1.8501 -2.4846 -0.0006 24 6 1.6948 -2.9622 -1.4214 25 1 1.9112 -2.2945 -2.2423 26 6 1.2763 -4.2515 -1.6736 27 7 1.0132 -5.0648 -0.6740 28 14 1.0845 -4.8437 -3.4348 29 1 2.3653 -5.4328 -3.9013 30 1 0.0148 -5.8718 -3.4976 31 1 0.7206 -3.6972 -4.3056 32 1 -0.3633 0.0004 -1.0277 33 1 -0.3633 -0.8903 0.5134 34 1 -0.3633 0.8897 0.5142 35 1 1.9719 2.1211 0.0004 36 1 5.6584 1.0777 -0.0013 37 1 5.9036 7.6693 -0.7704 38 1 7.5937 8.0175 -0.2922 39 1 8.3747 6.9433 -2.2035 40 1 6.6886 6.5965 -2.6930 41 1 8.9912 5.7418 0.1202 42 1 8.0604 4.2631 0.5724 43 1 2.5849 -3.1048 0.5129 44 1 0.8916 -2.5560 0.5135 45 1 0.7191 -5.9719 -0.8513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935184761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:13 Heat of formation + Delta-G solvation = 60.092997 kcal Electronic energy + Delta-G solvation = -25525.145340 eV Core-core repulsion = 21930.435678 eV Total energy + Delta-G solvation = -3594.709663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.53502 -42.05632 -40.18400 -36.38466 -35.32017 -34.45908 -33.03104 -32.65089 -29.86798 -28.98913 -28.63889 -27.92259 -26.26957 -24.70025 -22.69680 -22.52278 -21.31922 -20.98177 -19.86549 -19.53991 -18.82715 -18.36678 -17.71424 -17.10404 -16.86246 -16.60165 -16.28127 -16.19107 -15.60783 -15.49985 -14.76482 -14.35066 -13.96172 -13.88121 -13.82451 -13.72957 -13.52768 -13.26802 -13.14785 -12.87866 -12.69467 -12.45300 -12.35088 -12.26333 -12.16118 -12.12449 -11.99478 -11.76801 -11.57827 -11.38509 -11.21831 -10.96476 -10.76239 -10.73947 -10.58941 -9.62872 -9.18306 -8.34645 -6.52302 0.82479 1.26313 1.32826 1.36943 1.38165 1.49826 2.08480 2.23044 2.36332 2.75698 2.95163 3.26508 3.52484 3.56766 3.75095 3.94259 3.95110 4.03396 4.12989 4.17203 4.27584 4.40901 4.41804 4.50310 4.62539 4.68372 4.71203 4.76158 4.86131 4.88919 4.94765 4.97003 5.04349 5.09349 5.11222 5.21449 5.23382 5.25759 5.26460 5.27130 5.41213 5.51773 5.52174 5.78819 5.89348 6.22511 6.23941 6.59491 6.94714 7.07605 7.18592 8.71564 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.002482 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.624192 B =11280.694191 C =11720.527775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.088 3.912 3 C -0.301 4.301 4 C 0.271 3.729 5 N -0.620 5.620 6 C 0.548 3.452 7 O -0.550 6.550 8 C -0.161 4.161 9 H 0.155 0.845 10 C -0.133 4.133 11 H 0.102 0.898 12 C -0.128 4.128 13 H 0.104 0.896 14 C -0.070 4.070 15 H 0.111 0.889 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.068 4.068 19 H 0.115 0.885 20 C -0.134 4.134 21 N -0.356 5.356 22 N -0.342 5.342 23 C 0.275 3.725 24 C -0.553 4.553 25 H 0.048 0.952 26 C 0.023 3.977 27 N -0.918 5.918 28 Si 0.972 3.028 29 H -0.274 1.274 30 H -0.269 1.269 31 H -0.270 1.270 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.165 0.835 36 H 0.425 0.575 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.025 0.975 44 H 0.053 0.947 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.303 23.264 0.889 26.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C -0.331 4.331 4 C 0.017 3.983 5 N -0.269 5.269 6 C 0.337 3.663 7 O -0.426 6.426 8 C -0.181 4.181 9 H 0.172 0.828 10 C -0.152 4.152 11 H 0.120 0.880 12 C -0.147 4.147 13 H 0.123 0.877 14 C -0.088 4.088 15 H 0.129 0.871 16 C -0.154 4.154 17 C -0.155 4.155 18 C -0.087 4.087 19 H 0.133 0.867 20 C -0.171 4.171 21 N -0.187 5.187 22 N -0.125 5.125 23 C 0.156 3.844 24 C -0.592 4.592 25 H 0.067 0.933 26 C -0.178 4.178 27 N -0.556 5.556 28 Si 0.795 3.205 29 H -0.200 1.200 30 H -0.194 1.194 31 H -0.195 1.195 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.182 0.818 36 H 0.263 0.737 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.143 22.303 0.934 25.904 hybrid contribution -0.558 -0.558 -0.738 1.081 sum 12.584 21.745 0.195 25.125 Atomic orbital electron populations 1.20474 0.85253 1.04276 1.03973 1.21755 0.96707 0.86445 0.99369 1.21412 0.90022 0.99844 1.21851 1.19360 0.88856 0.89280 1.00814 1.42564 1.06964 1.05054 1.72304 1.20407 0.90951 0.80742 0.74212 1.90610 1.28416 1.74360 1.49200 1.22218 0.96802 0.93245 1.05855 0.82800 1.23706 0.99813 1.00734 0.90927 0.87968 1.23682 1.00321 0.89368 1.01289 0.87744 1.23263 0.91673 0.94549 0.99341 0.87145 1.22879 1.01270 0.96905 0.94384 1.22883 1.01521 0.93756 0.97376 1.23260 0.91786 0.95962 0.97643 0.86749 1.23789 0.98196 1.00112 0.94968 1.77177 1.00057 1.09897 1.31571 1.48814 1.01754 1.07569 1.54313 1.19267 0.94967 0.72308 0.97856 1.21420 1.47624 0.98423 0.91699 0.93342 1.25738 0.93897 0.95896 1.02288 1.69999 1.45026 1.07540 1.33002 0.85348 0.78316 0.78196 0.78594 1.19952 1.19409 1.19473 0.89798 0.91126 0.87585 0.81810 0.73699 0.92118 0.89956 0.89940 0.92392 0.88983 0.90208 0.95698 0.92916 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.81 10.11 71.24 0.72 -2.09 16 2 C 0.09 3.81 6.92 41.38 0.29 4.10 16 3 C -0.30 -12.77 9.52 22.11 0.21 -12.56 16 4 C 0.27 11.42 8.11 133.33 1.08 12.50 16 5 N -0.62 -19.72 5.45 -307.51 -1.68 -21.40 16 6 C 0.55 16.17 7.58 87.65 0.66 16.84 16 7 O -0.55 -20.05 13.50 -3.08 -0.04 -20.09 16 8 C -0.16 -3.14 5.39 -11.54 -0.06 -3.20 16 9 H 0.15 2.18 6.01 -2.39 -0.01 2.17 16 10 C -0.13 -2.34 6.20 -9.23 -0.06 -2.39 16 11 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 12 C -0.13 -2.33 5.91 -9.22 -0.05 -2.38 16 13 H 0.10 2.35 7.85 -2.38 -0.02 2.33 16 14 C -0.07 -0.84 5.12 -7.38 -0.04 -0.88 16 15 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 16 C -0.12 -1.25 6.36 32.84 0.21 -1.04 16 17 C -0.12 -1.26 6.25 32.85 0.21 -1.05 16 18 C -0.07 -0.80 5.18 -7.37 -0.04 -0.83 16 19 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 20 C -0.13 -1.30 6.24 33.37 0.21 -1.09 16 21 N -0.36 -17.19 12.59 -54.45 -0.69 -17.88 16 22 N -0.34 -16.98 3.59 -338.44 -1.22 -18.20 16 23 C 0.27 14.76 5.99 85.63 0.51 15.27 16 24 C -0.55 -31.42 9.39 25.60 0.24 -31.18 16 25 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 26 C 0.02 1.26 5.46 84.65 0.46 1.72 16 27 N -0.92 -52.11 13.29 21.45 0.28 -51.83 16 28 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 29 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 30 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 31 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 32 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.07 2.46 7.07 -2.38 -0.02 2.44 16 34 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.16 6.76 5.92 -2.91 -0.02 6.74 16 36 H 0.43 10.77 8.82 -92.71 -0.82 9.95 16 37 H 0.06 0.76 8.04 -2.38 -0.02 0.74 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.72 8.05 -2.38 -0.02 0.70 16 41 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.08 0.75 5.92 -2.39 -0.01 0.74 16 43 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 2.80 7.04 -2.39 -0.02 2.78 16 45 H 0.27 14.50 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -70.45 363.12 3.44 -67.01 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.20 Total: 25.25 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 4.55 Total: -8.27 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -3.29 Total: -109.30 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.04 Total: -20.09 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -70.45 3.44 -67.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935184761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.105 kcal (2) G-P(sol) polarization free energy of solvation -70.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds