Wall clock time and date at job start Tue Mar 31 2020 11:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38607 * 119.55345 * 2 1 4 4 C 1.38577 * 119.35535 * 179.97438 * 3 2 1 5 5 C 1.38628 * 118.48810 * 0.02562 * 4 3 2 6 6 C 1.39267 * 119.06503 * 359.97438 * 5 4 3 7 7 C 1.48163 * 119.72795 * 180.02562 * 6 5 4 8 8 O 1.21517 * 119.99801 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00080 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00087 * 180.02562 * 9 7 6 11 11 C 1.53949 * 113.58025 * 205.00200 * 10 9 7 12 12 C 1.52903 * 86.78075 * 220.66164 * 11 10 9 13 13 C 1.52910 * 121.13886 * 259.17953 * 12 11 10 14 14 C 1.53950 * 86.78717 * 209.38108 * 13 12 11 15 15 N 1.46496 * 113.58021 * 139.33339 * 14 13 12 16 16 C 1.36940 * 119.99523 * 107.28284 * 15 14 13 17 17 H 1.07998 * 120.00443 * 359.97438 * 16 15 14 18 18 C 1.38824 * 119.99745 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99935 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99860 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47240 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47228 * 120.00177 * 20 18 16 23 23 H 1.48498 * 109.47040 * 239.99788 * 20 18 16 24 24 C 1.52917 * 121.14033 * 150.62039 * 12 11 10 25 25 C 1.52907 * 88.04638 * 24.89875 * 12 11 10 26 26 N 1.31502 * 119.55362 * 180.24839 * 2 1 3 27 27 H 1.09002 * 109.46590 * 89.99831 * 1 2 3 28 28 H 1.08992 * 109.47029 * 209.99907 * 1 2 3 29 29 H 1.09000 * 109.46981 * 329.99938 * 1 2 3 30 30 H 1.08007 * 120.31842 * 359.95706 * 3 2 1 31 31 H 1.08002 * 120.75932 * 180.02562 * 4 3 2 32 32 H 1.08005 * 120.47358 * 180.02562 * 5 4 3 33 33 H 0.97003 * 120.00358 * 0.02562 * 9 7 6 34 34 H 1.09004 * 112.82150 * 336.08416 * 10 9 7 35 35 H 1.08999 * 113.66653 * 106.18857 * 11 10 9 36 36 H 1.09000 * 113.66492 * 335.13051 * 11 10 9 37 37 H 1.09007 * 113.66009 * 323.85167 * 13 12 11 38 38 H 1.09002 * 113.66292 * 94.90250 * 13 12 11 39 39 H 1.09001 * 113.57502 * 270.13001 * 14 13 12 40 40 H 0.96998 * 120.00298 * 287.28307 * 15 14 13 41 41 H 0.96993 * 120.00000 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.65915 * 265.09197 * 24 12 11 43 43 H 1.08997 * 113.66386 * 36.04920 * 24 12 11 44 44 H 1.08995 * 113.66604 * 89.57097 * 25 12 11 45 45 H 1.08996 * 113.66613 * 220.63169 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5764 1.2009 0.0005 5 6 4.2334 -0.0198 0.0005 6 6 3.4821 -1.1924 0.0005 7 6 4.1692 -2.5051 0.0011 8 8 5.3833 -2.5554 0.0020 9 7 3.4476 -3.6434 0.0005 10 6 4.1270 -4.9414 0.0016 11 6 3.2803 -6.0802 -0.5954 12 6 3.8179 -6.9570 0.5360 13 6 4.9565 -7.9488 0.2950 14 6 4.3374 -8.7996 1.4188 15 7 4.3471 -10.2374 1.1384 16 6 5.2119 -11.0600 1.8095 17 1 5.8872 -10.6489 2.5453 18 6 5.2207 -12.4227 1.5442 19 7 4.3974 -12.9239 0.6479 20 14 6.4009 -13.5447 2.4592 21 1 7.2146 -12.7407 3.4062 22 1 5.6296 -14.5662 3.2122 23 1 7.2973 -14.2193 1.4862 24 6 2.9953 -8.1181 1.0958 25 6 4.0397 -5.6811 1.3490 26 7 2.1556 -1.1439 -0.0050 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6485 2.1399 -0.0007 31 1 4.1320 2.1271 0.0010 32 1 5.3127 -0.0609 0.0013 33 1 2.4784 -3.6033 -0.0006 34 1 5.1372 -4.8902 -0.4045 35 1 3.6073 -6.3953 -1.5862 36 1 2.2063 -5.9028 -0.5388 37 1 4.9213 -8.4256 -0.6846 38 1 5.9418 -7.5515 0.5391 39 1 4.7214 -8.5585 2.4101 40 1 3.7408 -10.6067 0.4773 41 1 4.4033 -13.8760 0.4628 42 1 2.4138 -7.8561 1.9797 43 1 2.4076 -8.6415 0.3416 44 1 3.1793 -5.3914 1.9521 45 1 4.9734 -5.6773 1.9113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963576294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:06 Heat of formation + Delta-G solvation = 49.352485 kcal Electronic energy + Delta-G solvation = -24878.013389 eV Core-core repulsion = 21282.837983 eV Total energy + Delta-G solvation = -3595.175406 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06194 -40.27764 -38.85940 -35.87792 -33.80165 -33.44044 -32.95144 -31.85730 -29.49789 -28.20809 -25.73250 -25.48583 -25.14687 -24.03201 -22.85932 -22.06275 -20.77794 -20.06261 -18.33537 -17.61561 -17.06366 -16.91531 -16.39141 -15.98253 -15.55461 -15.16070 -14.95972 -14.60667 -14.46657 -14.15160 -13.95756 -13.61064 -13.36867 -12.89596 -12.81289 -12.72251 -12.52511 -12.42942 -12.37546 -11.88962 -11.58873 -11.25179 -11.17380 -10.82900 -10.76021 -10.52444 -10.39262 -10.24008 -9.99073 -9.86760 -9.75650 -9.64897 -9.45047 -9.34701 -9.02118 -8.82776 -6.91591 -5.75004 -3.03101 0.25483 0.75422 2.46601 2.91897 3.45053 3.47552 3.50974 3.53107 3.65928 4.20347 4.39431 4.52109 4.59982 4.62192 4.62374 4.73623 4.84832 4.92952 4.95423 5.08811 5.13413 5.13837 5.43314 5.47084 5.53135 5.55790 5.64369 5.67388 5.77358 5.85763 5.94706 5.99233 6.02147 6.13667 6.14523 6.23680 6.29333 6.41133 6.46237 6.54789 6.69292 6.97780 7.17724 7.22453 7.49828 7.73954 8.01729 8.44040 9.55049 10.14135 10.48518 11.47619 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.035698 B = 0.002028 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.161045 B =13803.936092 C =14262.022594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.126 3.874 3 C -0.152 4.152 4 C -0.078 4.078 5 C -0.119 4.119 6 C 0.086 3.914 7 C 0.569 3.431 8 O -0.533 6.533 9 N -0.697 5.697 10 C 0.120 3.880 11 C -0.129 4.129 12 C -0.101 4.101 13 C -0.142 4.142 14 C 0.168 3.832 15 N -0.714 5.714 16 C -0.240 4.240 17 H 0.072 0.928 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.135 4.135 25 C -0.124 4.124 26 N -0.460 5.460 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.410 0.590 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.385 0.615 41 H 0.254 0.746 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.205 31.256 -2.673 32.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.014 4.014 3 C -0.172 4.172 4 C -0.104 4.104 5 C -0.140 4.140 6 C -0.052 4.052 7 C 0.353 3.647 8 O -0.410 6.410 9 N -0.346 5.346 10 C 0.016 3.984 11 C -0.168 4.168 12 C -0.103 4.103 13 C -0.183 4.183 14 C 0.056 3.944 15 N -0.351 5.351 16 C -0.372 4.372 17 H 0.090 0.910 18 C -0.211 4.211 19 N -0.582 5.582 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.174 4.174 25 C -0.162 4.162 26 N -0.173 5.173 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.167 0.833 33 H 0.246 0.754 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.636 30.265 -2.553 31.318 hybrid contribution 0.438 0.138 0.174 0.490 sum -7.198 30.403 -2.380 31.334 Atomic orbital electron populations 1.20750 0.88182 1.03869 1.03431 1.21344 0.97239 0.87916 0.94925 1.22206 0.95067 0.99484 1.00478 1.21642 0.94437 0.98371 0.95936 1.22148 1.02444 0.91807 0.97607 1.21207 0.89621 0.94335 1.00078 1.17919 0.86589 0.83392 0.76760 1.90798 1.13000 1.87009 1.50153 1.45926 1.10838 1.05157 1.72694 1.22721 0.98092 0.79599 0.97976 1.23176 0.99511 0.94870 0.99210 1.22092 0.99834 0.92270 0.96061 1.23604 0.95822 0.96461 1.02383 1.21540 0.92860 0.84396 0.95571 1.42429 1.44558 1.00915 1.47242 1.19372 1.12748 0.88951 1.16089 0.91048 1.24766 0.99773 0.96940 0.99633 1.69669 1.40098 1.12248 1.36149 0.86119 0.80286 0.80890 0.78927 1.20530 1.21908 1.21900 1.23263 0.98252 0.95838 1.00087 1.23140 1.02443 0.94457 0.96188 1.67380 1.08594 1.30204 1.11130 0.90109 0.90090 0.90468 0.84241 0.83953 0.83343 0.75402 0.86673 0.90734 0.89799 0.90098 0.92503 0.90791 0.78126 0.93578 0.92271 0.90196 0.89819 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 10.17 36.00 0.37 -0.12 16 2 C 0.13 0.94 6.78 -82.60 -0.56 0.38 16 3 C -0.15 -0.89 9.75 -39.32 -0.38 -1.27 16 4 C -0.08 -0.49 10.17 -39.31 -0.40 -0.89 16 5 C -0.12 -1.08 9.63 -39.06 -0.38 -1.45 16 6 C 0.09 0.94 6.75 -83.01 -0.56 0.38 16 7 C 0.57 7.38 7.81 -12.19 -0.10 7.28 16 8 O -0.53 -8.45 15.92 5.35 0.09 -8.37 16 9 N -0.70 -8.07 5.34 -53.69 -0.29 -8.35 16 10 C 0.12 1.51 4.24 -66.95 -0.28 1.23 16 11 C -0.13 -1.58 7.59 -26.29 -0.20 -1.78 16 12 C -0.10 -1.46 1.11 -154.71 -0.17 -1.63 16 13 C -0.14 -2.49 7.64 -26.28 -0.20 -2.69 16 14 C 0.17 3.38 4.48 -66.95 -0.30 3.08 16 15 N -0.71 -18.12 5.40 -52.47 -0.28 -18.40 16 16 C -0.24 -6.76 9.97 -15.05 -0.15 -6.91 16 17 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 20 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 C -0.14 -2.24 7.59 -26.28 -0.20 -2.44 16 25 C -0.12 -1.62 7.64 -26.28 -0.20 -1.82 16 26 N -0.46 -4.54 9.45 -6.06 -0.06 -4.60 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.20 8.08 -51.93 -0.42 -0.21 16 30 H 0.14 0.40 8.06 -52.48 -0.42 -0.02 16 31 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 32 H 0.15 1.30 7.64 -52.48 -0.40 0.89 16 33 H 0.41 4.12 8.05 -40.82 -0.33 3.79 16 34 H 0.12 1.63 7.46 -51.93 -0.39 1.24 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 37 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.51 8.10 -51.93 -0.42 1.08 16 40 H 0.38 10.33 7.92 -40.82 -0.32 10.00 16 41 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -33.04 377.75 -9.86 -42.90 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.90 Total: 10.42 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -3.81 Total: -9.20 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.10 Total: -59.07 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.04 -9.86 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963576294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.253 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds