Wall clock time and date at job start Tue Mar 31 2020 11:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38607 * 119.55345 * 2 1 4 4 C 1.38577 * 119.35535 * 179.97438 * 3 2 1 5 5 C 1.38628 * 118.48810 * 0.02562 * 4 3 2 6 6 C 1.39267 * 119.06503 * 359.97438 * 5 4 3 7 7 C 1.48163 * 119.72795 * 180.02562 * 6 5 4 8 8 O 1.21517 * 119.99801 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00080 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00087 * 180.02562 * 9 7 6 11 11 C 1.53949 * 113.58025 * 205.00200 * 10 9 7 12 12 C 1.52903 * 86.78075 * 220.66164 * 11 10 9 13 13 C 1.52910 * 121.13886 * 259.17953 * 12 11 10 14 14 C 1.53950 * 86.78717 * 209.38108 * 13 12 11 15 15 N 1.46496 * 113.58021 * 139.33339 * 14 13 12 16 16 C 1.36940 * 119.99523 * 107.28284 * 15 14 13 17 17 H 1.07998 * 120.00443 * 359.97438 * 16 15 14 18 18 C 1.38824 * 119.99745 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99935 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99860 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47240 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47228 * 120.00177 * 20 18 16 23 23 H 1.48498 * 109.47040 * 239.99788 * 20 18 16 24 24 C 1.52917 * 121.14033 * 150.62039 * 12 11 10 25 25 C 1.52907 * 88.04638 * 24.89875 * 12 11 10 26 26 N 1.31502 * 119.55362 * 180.24839 * 2 1 3 27 27 H 1.09002 * 109.46590 * 89.99831 * 1 2 3 28 28 H 1.08992 * 109.47029 * 209.99907 * 1 2 3 29 29 H 1.09000 * 109.46981 * 329.99938 * 1 2 3 30 30 H 1.08007 * 120.31842 * 359.95706 * 3 2 1 31 31 H 1.08002 * 120.75932 * 180.02562 * 4 3 2 32 32 H 1.08005 * 120.47358 * 180.02562 * 5 4 3 33 33 H 0.97003 * 120.00358 * 0.02562 * 9 7 6 34 34 H 1.09004 * 112.82150 * 336.08416 * 10 9 7 35 35 H 1.08999 * 113.66653 * 106.18857 * 11 10 9 36 36 H 1.09000 * 113.66492 * 335.13051 * 11 10 9 37 37 H 1.09007 * 113.66009 * 323.85167 * 13 12 11 38 38 H 1.09002 * 113.66292 * 94.90250 * 13 12 11 39 39 H 1.09001 * 113.57502 * 270.13001 * 14 13 12 40 40 H 0.96998 * 120.00298 * 287.28307 * 15 14 13 41 41 H 0.96993 * 120.00000 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.65915 * 265.09197 * 24 12 11 43 43 H 1.08997 * 113.66386 * 36.04920 * 24 12 11 44 44 H 1.08995 * 113.66604 * 89.57097 * 25 12 11 45 45 H 1.08996 * 113.66613 * 220.63169 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5764 1.2009 0.0005 5 6 4.2334 -0.0198 0.0005 6 6 3.4821 -1.1924 0.0005 7 6 4.1692 -2.5051 0.0011 8 8 5.3833 -2.5554 0.0020 9 7 3.4476 -3.6434 0.0005 10 6 4.1270 -4.9414 0.0016 11 6 3.2803 -6.0802 -0.5954 12 6 3.8179 -6.9570 0.5360 13 6 4.9565 -7.9488 0.2950 14 6 4.3374 -8.7996 1.4188 15 7 4.3471 -10.2374 1.1384 16 6 5.2119 -11.0600 1.8095 17 1 5.8872 -10.6489 2.5453 18 6 5.2207 -12.4227 1.5442 19 7 4.3974 -12.9239 0.6479 20 14 6.4009 -13.5447 2.4592 21 1 7.2146 -12.7407 3.4062 22 1 5.6296 -14.5662 3.2122 23 1 7.2973 -14.2193 1.4862 24 6 2.9953 -8.1181 1.0958 25 6 4.0397 -5.6811 1.3490 26 7 2.1556 -1.1439 -0.0050 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6485 2.1399 -0.0007 31 1 4.1320 2.1271 0.0010 32 1 5.3127 -0.0609 0.0013 33 1 2.4784 -3.6033 -0.0006 34 1 5.1372 -4.8902 -0.4045 35 1 3.6073 -6.3953 -1.5862 36 1 2.2063 -5.9028 -0.5388 37 1 4.9213 -8.4256 -0.6846 38 1 5.9418 -7.5515 0.5391 39 1 4.7214 -8.5585 2.4101 40 1 3.7408 -10.6067 0.4773 41 1 4.4033 -13.8760 0.4628 42 1 2.4138 -7.8561 1.9797 43 1 2.4076 -8.6415 0.3416 44 1 3.1793 -5.3914 1.9521 45 1 4.9734 -5.6773 1.9113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963576294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:05 Heat of formation + Delta-G solvation = 27.939665 kcal Electronic energy + Delta-G solvation = -24878.941919 eV Core-core repulsion = 21282.837983 eV Total energy + Delta-G solvation = -3596.103936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.90975 -41.28931 -39.86254 -37.27898 -35.32133 -34.04632 -33.97757 -32.98395 -31.36040 -28.69228 -26.80201 -26.58544 -26.48908 -25.75226 -23.74242 -22.92355 -21.74853 -21.48878 -19.50681 -19.04886 -18.55617 -17.72463 -17.07433 -16.91891 -16.74002 -16.35073 -16.11675 -15.81233 -15.67962 -15.19806 -15.10704 -14.84707 -14.40834 -14.02652 -13.82982 -13.66944 -13.27557 -13.17830 -13.08061 -13.05825 -13.00076 -12.87938 -12.87796 -12.41622 -12.36735 -12.10324 -11.85336 -11.51680 -11.19230 -11.06773 -10.93896 -10.89920 -10.77035 -10.52875 -10.17186 -9.90523 -8.97369 -7.94962 -5.22784 -0.38964 0.21945 1.46632 1.47303 1.57512 1.64451 2.03253 2.56167 2.80263 3.01451 3.36212 3.47408 3.52996 3.64156 3.72587 3.81556 3.86859 3.99027 4.02081 4.08741 4.27862 4.31694 4.41352 4.50604 4.60326 4.61366 4.77256 4.78098 4.80248 4.85042 4.92932 5.00682 5.03634 5.05682 5.09363 5.12850 5.14339 5.22932 5.24145 5.43932 5.52592 5.59395 5.65667 5.69933 6.28017 6.38230 6.79482 7.09688 7.33515 8.11463 8.34550 9.28570 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.035698 B = 0.002028 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.161045 B =13803.936092 C =14262.022594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.112 3.888 3 C -0.139 4.139 4 C -0.074 4.074 5 C -0.132 4.132 6 C 0.057 3.943 7 C 0.565 3.435 8 O -0.573 6.573 9 N -0.687 5.687 10 C 0.124 3.876 11 C -0.116 4.116 12 C -0.089 4.089 13 C -0.138 4.138 14 C 0.147 3.853 15 N -0.728 5.728 16 C -0.242 4.242 17 H 0.074 0.926 18 C -0.079 4.079 19 N -0.970 5.970 20 Si 0.972 3.028 21 H -0.267 1.267 22 H -0.292 1.292 23 H -0.294 1.294 24 C -0.122 4.122 25 C -0.118 4.118 26 N -0.477 5.477 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.178 0.822 31 H 0.175 0.825 32 H 0.142 0.858 33 H 0.419 0.581 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.374 0.626 41 H 0.251 0.749 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.582 34.289 -2.238 35.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.029 4.029 3 C -0.159 4.159 4 C -0.100 4.100 5 C -0.153 4.153 6 C -0.080 4.080 7 C 0.351 3.649 8 O -0.452 6.452 9 N -0.337 5.337 10 C 0.020 3.980 11 C -0.154 4.154 12 C -0.090 4.090 13 C -0.178 4.178 14 C 0.038 3.962 15 N -0.366 5.366 16 C -0.374 4.374 17 H 0.092 0.908 18 C -0.271 4.271 19 N -0.621 5.621 20 Si 0.802 3.198 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.221 1.221 24 C -0.161 4.161 25 C -0.156 4.156 26 N -0.191 5.191 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.195 0.805 31 H 0.193 0.807 32 H 0.160 0.840 33 H 0.257 0.743 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.206 0.794 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.119 0.881 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.028 33.350 -2.102 34.615 hybrid contribution 0.815 -0.641 0.045 1.037 sum -8.213 32.710 -2.057 33.788 Atomic orbital electron populations 1.20839 0.86174 1.04747 1.04222 1.21960 0.98649 0.87932 0.94341 1.22662 0.94962 1.00393 0.97866 1.22034 0.95022 0.98377 0.94539 1.22262 1.02316 0.92581 0.98126 1.20951 0.90431 0.93585 1.03021 1.18336 0.86279 0.84468 0.75804 1.90763 1.14652 1.87696 1.52118 1.45809 1.11172 1.04523 1.72157 1.22498 0.97544 0.80341 0.97639 1.23144 1.00737 0.93292 0.98262 1.21880 0.97452 0.91981 0.97671 1.23401 0.96970 0.96919 1.00523 1.21907 0.96026 0.82173 0.96136 1.42603 1.44108 1.02845 1.46997 1.19742 1.12549 0.89584 1.15542 0.90761 1.25573 1.01917 0.98500 1.01065 1.69817 1.42050 1.12171 1.38013 0.85081 0.78212 0.78802 0.77732 1.19148 1.21942 1.22138 1.23106 0.96615 0.95741 1.00642 1.23152 1.02773 0.93312 0.96385 1.67325 1.08007 1.31786 1.11934 0.89249 0.90855 0.87983 0.80478 0.80733 0.84038 0.74326 0.88471 0.90640 0.87454 0.91392 0.92620 0.91220 0.79396 0.94046 0.90775 0.90591 0.88102 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.64 10.17 71.23 0.72 0.08 16 2 C 0.11 1.40 6.78 42.70 0.29 1.69 16 3 C -0.14 -1.13 9.75 22.44 0.22 -0.91 16 4 C -0.07 -0.74 10.17 22.44 0.23 -0.51 16 5 C -0.13 -2.30 9.63 22.61 0.22 -2.08 16 6 C 0.06 1.23 6.75 41.89 0.28 1.52 16 7 C 0.57 14.87 7.81 86.88 0.68 15.55 16 8 O -0.57 -18.87 15.92 -3.77 -0.06 -18.93 16 9 N -0.69 -15.52 5.34 -442.07 -2.36 -17.88 16 10 C 0.12 3.05 4.24 45.63 0.19 3.24 16 11 C -0.12 -2.66 7.59 30.88 0.23 -2.42 16 12 C -0.09 -2.47 1.11 -52.31 -0.06 -2.53 16 13 C -0.14 -4.88 7.64 30.88 0.24 -4.65 16 14 C 0.15 5.96 4.48 45.63 0.20 6.16 16 15 N -0.73 -37.72 5.40 -319.92 -1.73 -39.45 16 16 C -0.24 -13.81 9.97 84.04 0.84 -12.98 16 17 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.08 -4.61 5.50 84.87 0.47 -4.14 16 19 N -0.97 -60.37 13.06 21.66 0.28 -60.09 16 20 Si 0.97 47.18 29.55 68.60 2.03 49.21 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 24 C -0.12 -3.93 7.59 30.89 0.23 -3.69 16 25 C -0.12 -2.94 7.64 30.88 0.24 -2.71 16 26 N -0.48 -8.86 9.45 -173.08 -1.64 -10.49 16 27 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 0.13 8.08 -2.39 -0.02 0.11 16 30 H 0.18 0.07 8.06 -2.91 -0.02 0.05 16 31 H 0.18 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.14 2.55 7.64 -2.91 -0.02 2.53 16 33 H 0.42 7.90 8.05 -92.71 -0.75 7.15 16 34 H 0.10 2.79 7.46 -2.38 -0.02 2.77 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.11 2.01 8.12 -2.39 -0.02 2.00 16 37 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.86 8.10 -2.39 -0.02 2.84 16 40 H 0.37 20.66 7.92 -92.71 -0.73 19.92 16 41 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 42 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 43 H 0.08 2.53 8.12 -2.39 -0.02 2.51 16 44 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -73.69 377.75 1.27 -72.41 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: -0.47 Total: 33.60 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 5.22 Total: -8.38 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -5.44 Total: -127.92 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.06 Total: -18.93 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -73.69 1.27 -72.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963576294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.351 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds