Wall clock time and date at job start Tue Mar 31 2020 11:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38632 * 120.46907 * 2 1 4 4 C 1.38583 * 118.49060 * 179.97438 * 3 2 1 5 5 C 1.38608 * 119.34634 * 359.97438 * 4 3 2 6 6 N 1.31489 * 120.90246 * 0.02562 * 5 4 3 7 7 C 1.32750 * 121.64424 * 359.68857 * 6 5 4 8 8 C 1.48167 * 119.71950 * 180.30831 * 7 6 5 9 9 O 1.21515 * 119.99208 * 186.06305 * 8 7 6 10 10 N 1.34777 * 120.00607 * 6.06453 * 8 7 6 11 11 C 1.46492 * 120.00137 * 180.02562 * 10 8 7 12 12 C 1.53949 * 113.58126 * 252.72247 * 11 10 8 13 13 C 1.52911 * 86.78399 * 220.66555 * 12 11 10 14 14 C 1.52904 * 121.13654 * 150.61628 * 13 12 11 15 15 C 1.53950 * 86.78472 * 100.82289 * 14 13 12 16 16 N 1.46492 * 113.58307 * 139.33441 * 15 14 13 17 17 C 1.36944 * 119.99948 * 107.27758 * 16 15 14 18 18 H 1.07994 * 120.00091 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99803 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99617 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00163 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47133 * 89.99876 * 21 19 17 23 23 H 1.48506 * 109.47112 * 210.00182 * 21 19 17 24 24 H 1.48500 * 109.47120 * 329.99826 * 21 19 17 25 25 C 1.52910 * 121.13533 * 259.17742 * 13 12 11 26 26 C 1.52909 * 88.04158 * 24.89729 * 13 12 11 27 27 H 1.09000 * 109.47284 * 96.73564 * 1 2 3 28 28 H 1.09000 * 109.46720 * 336.73592 * 1 2 3 29 29 H 1.09001 * 109.46657 * 216.73526 * 1 2 3 30 30 H 1.07997 * 120.75448 * 359.95438 * 3 2 1 31 31 H 1.07994 * 120.32861 * 180.02562 * 4 3 2 32 32 H 1.08003 * 119.54302 * 180.02562 * 5 4 3 33 33 H 0.96998 * 119.99718 * 359.97438 * 10 8 7 34 34 H 1.09003 * 112.82579 * 23.91406 * 11 10 8 35 35 H 1.09005 * 113.66085 * 335.13456 * 12 11 10 36 36 H 1.08996 * 113.66718 * 106.19219 * 12 11 10 37 37 H 1.09003 * 113.65755 * 215.28861 * 14 13 12 38 38 H 1.08997 * 113.66880 * 346.34542 * 14 13 12 39 39 H 1.09002 * 113.57331 * 270.12691 * 15 14 13 40 40 H 0.97002 * 120.00362 * 287.27674 * 16 15 14 41 41 H 0.97004 * 119.99710 * 180.02562 * 20 19 17 42 42 H 1.09002 * 113.66093 * 13.65088 * 25 13 12 43 43 H 1.08999 * 113.66472 * 144.60876 * 25 13 12 44 44 H 1.09003 * 113.66253 * 220.63663 * 26 13 12 45 45 H 1.08997 * 113.66535 * 89.57292 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1470 0.0005 5 6 4.2322 -0.0839 0.0016 6 7 3.5407 -1.2023 0.0016 7 6 2.2132 -1.2003 0.0067 8 6 1.4768 -2.4860 0.0134 9 8 0.2663 -2.4932 -0.0930 10 7 2.1493 -3.6473 0.1376 11 6 1.4212 -4.9184 0.1436 12 6 1.3579 -5.5854 1.5297 13 6 1.6002 -6.9112 0.8075 14 6 2.3224 -8.0679 1.4993 15 6 0.9307 -8.6830 1.7330 16 7 0.8886 -10.1328 1.5275 17 6 0.7808 -10.9740 2.6028 18 1 0.7264 -10.5685 3.6022 19 6 0.7405 -12.3478 2.4080 20 7 0.6364 -13.1561 3.4415 21 14 0.8339 -13.0492 0.6792 22 1 2.2542 -13.2898 0.3188 23 1 0.0850 -14.3304 0.6237 24 1 0.2365 -12.0848 -0.2791 25 6 0.4490 -7.8741 0.5149 26 6 2.2715 -6.1175 -0.3138 27 1 -0.3634 -0.1205 -1.0206 28 1 -0.3633 0.9441 0.4059 29 1 -0.3633 -0.8236 0.6147 30 1 1.6901 2.1415 -0.0007 31 1 4.1722 2.0598 0.0010 32 1 5.3115 -0.1249 0.0025 33 1 3.1156 -3.6415 0.2222 34 1 0.4541 -4.8542 -0.3552 35 1 2.1720 -5.2935 2.1932 36 1 0.3786 -5.5179 2.0035 37 1 2.9525 -8.6533 0.8295 38 1 2.8327 -7.7784 2.4179 39 1 0.4697 -8.3744 2.6713 40 1 0.9371 -10.4971 0.6298 41 1 0.6085 -14.1162 3.3054 42 1 -0.5375 -7.4296 0.6472 43 1 0.5516 -8.4038 -0.4322 44 1 2.0219 -6.4750 -1.3129 45 1 3.3424 -5.9751 -0.1686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963657278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:12 Heat of formation + Delta-G solvation = 58.369676 kcal Electronic energy + Delta-G solvation = -25152.291717 eV Core-core repulsion = 21557.507325 eV Total energy + Delta-G solvation = -3594.784391 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17711 -40.34121 -38.85922 -36.06996 -34.28187 -33.45378 -32.62747 -31.86837 -30.11306 -27.83121 -25.80680 -25.42342 -25.21785 -23.96679 -22.84139 -22.08145 -20.88541 -20.15976 -18.49115 -17.84955 -17.25047 -17.16357 -16.17305 -15.95496 -15.68555 -15.28941 -15.09148 -14.78904 -14.13413 -14.08688 -13.91141 -13.63646 -13.49356 -13.05720 -12.71248 -12.64097 -12.60465 -12.44054 -12.33830 -12.26554 -11.78745 -11.61859 -11.11402 -11.03715 -10.73691 -10.39691 -10.26435 -10.21146 -10.12014 -9.84615 -9.74630 -9.64074 -9.47735 -9.40925 -9.02327 -8.85837 -7.23213 -5.75777 -3.10780 0.24830 0.74429 2.45732 2.90126 3.38772 3.41680 3.45240 3.46457 3.78598 4.30834 4.34537 4.47747 4.48993 4.53668 4.60149 4.61749 4.74571 4.85196 4.92104 5.10561 5.26719 5.29108 5.40822 5.44240 5.50414 5.56689 5.64490 5.72180 5.73397 5.80708 5.84387 5.89203 5.91934 6.05965 6.10210 6.15257 6.23929 6.27272 6.34402 6.49086 6.59542 6.82898 7.03603 7.18354 7.46553 7.99138 8.01683 8.44289 9.22458 9.95218 10.15481 11.42590 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.036634 B = 0.002140 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.125757 B =13081.994202 C =13298.583684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.072 4.072 3 C -0.088 4.088 4 C -0.146 4.146 5 C 0.089 3.911 6 N -0.455 5.455 7 C 0.071 3.929 8 C 0.569 3.431 9 O -0.529 6.529 10 N -0.698 5.698 11 C 0.121 3.879 12 C -0.123 4.123 13 C -0.102 4.102 14 C -0.148 4.148 15 C 0.174 3.826 16 N -0.738 5.738 17 C -0.245 4.245 18 H 0.091 0.909 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.132 4.132 26 C -0.129 4.129 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.163 0.837 33 H 0.410 0.590 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.362 0.638 41 H 0.259 0.741 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.204 31.787 -9.262 33.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.075 4.075 3 C -0.114 4.114 4 C -0.166 4.166 5 C -0.071 4.071 6 N -0.166 5.166 7 C -0.067 4.067 8 C 0.354 3.646 9 O -0.405 6.405 10 N -0.347 5.347 11 C 0.016 3.984 12 C -0.162 4.162 13 C -0.103 4.103 14 C -0.189 4.189 15 C 0.063 3.937 16 N -0.378 5.378 17 C -0.375 4.375 18 H 0.108 0.892 19 C -0.193 4.193 20 N -0.582 5.582 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.171 4.171 26 C -0.168 4.168 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.180 0.820 33 H 0.246 0.754 34 H 0.133 0.867 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.195 0.805 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.697 30.781 -9.094 32.597 hybrid contribution 0.404 0.335 -1.186 1.297 sum 6.102 31.116 -10.279 33.333 Atomic orbital electron populations 1.21091 0.88860 1.03523 1.04116 1.20988 0.98546 0.92377 0.95580 1.21587 0.94195 0.98174 0.97422 1.22390 0.95301 0.99909 0.99013 1.22784 1.00515 0.87304 0.96495 1.67530 1.07092 1.32076 1.09903 1.21065 0.89870 0.93760 1.01990 1.17902 0.86644 0.83218 0.76792 1.90741 1.13122 1.86634 1.50035 1.45930 1.11399 1.05238 1.72176 1.22712 0.97179 0.80360 0.98100 1.23144 1.02659 0.94211 0.96157 1.22065 0.98959 0.92728 0.96582 1.23602 1.00076 0.95717 0.99503 1.21526 0.93091 0.83249 0.95829 1.42773 1.88359 1.01000 1.05639 1.19152 1.42524 0.87666 0.88184 0.89157 1.24702 1.02013 0.95908 0.96669 1.69709 1.57244 1.02802 1.28413 0.86540 0.77749 0.78580 0.85625 1.21103 1.21755 1.20297 1.23233 0.96499 0.96763 1.00560 1.23179 0.99443 0.94789 0.99357 0.90267 0.92140 0.88051 0.84107 0.84190 0.82005 0.75429 0.86672 0.89665 0.90745 0.90380 0.92225 0.89953 0.80511 0.93087 0.91697 0.90254 0.90848 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 8.75 36.01 0.32 -0.70 16 2 C -0.07 -0.65 5.93 -104.09 -0.62 -1.26 16 3 C -0.09 -0.56 9.83 -39.31 -0.39 -0.94 16 4 C -0.15 -0.78 10.12 -39.32 -0.40 -1.18 16 5 C 0.09 0.60 11.18 -17.56 -0.20 0.40 16 6 N -0.46 -4.32 9.56 -9.80 -0.09 -4.41 16 7 C 0.07 0.75 6.75 -83.01 -0.56 0.19 16 8 C 0.57 6.90 7.75 -12.18 -0.09 6.81 16 9 O -0.53 -7.48 12.91 5.35 0.07 -7.41 16 10 N -0.70 -7.60 5.34 -53.70 -0.29 -7.89 16 11 C 0.12 1.40 4.24 -66.95 -0.28 1.11 16 12 C -0.12 -1.51 7.64 -26.28 -0.20 -1.71 16 13 C -0.10 -1.38 1.11 -154.71 -0.17 -1.55 16 14 C -0.15 -2.42 7.64 -26.29 -0.20 -2.62 16 15 C 0.17 3.33 4.48 -66.95 -0.30 3.03 16 16 N -0.74 -17.53 5.20 -52.48 -0.27 -17.81 16 17 C -0.25 -6.96 10.45 -15.06 -0.16 -7.12 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 20 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 21 Si 0.88 22.25 27.74 -169.99 -4.71 17.54 16 22 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 25 C -0.13 -2.05 7.59 -26.28 -0.20 -2.25 16 26 C -0.13 -1.47 7.59 -26.28 -0.20 -1.67 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.38 8.05 -51.93 -0.42 -0.04 16 29 H 0.10 1.08 5.83 -51.93 -0.30 0.78 16 30 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 31 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 32 H 0.16 0.62 8.06 -52.48 -0.42 0.19 16 33 H 0.41 3.95 8.07 -40.82 -0.33 3.62 16 34 H 0.12 1.47 7.46 -51.93 -0.39 1.08 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 40 H 0.36 8.44 5.78 -40.82 -0.24 8.20 16 41 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.24 8.12 -51.93 -0.42 0.81 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -33.25 369.07 -9.47 -42.72 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.76 Total: 9.92 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -3.75 Total: -9.47 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.12 Total: -58.85 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.07 Total: -7.41 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.25 -9.47 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963657278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.088 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds